Wall clock time and date at job start Tue Mar 31 2020 12:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48492 * 109.47157 * 240.00233 * 3 2 1 5 5 H 1.48503 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46897 * 119.99700 * 3 2 1 7 7 C 1.37874 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99692 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.88747 * 303.88073 * 9 7 2 11 11 C 1.55157 * 111.00201 * 180.02562 * 9 7 2 12 12 C 1.54326 * 102.94187 * 206.38193 * 11 9 7 13 13 N 1.47022 * 107.26907 * 22.19702 * 12 11 9 14 14 C 1.34778 * 125.64673 * 181.02351 * 13 12 11 15 15 O 1.21579 * 119.99799 * 184.85400 * 14 13 12 16 16 C 1.47595 * 119.99932 * 4.85109 * 14 13 12 17 17 C 1.39554 * 120.21772 * 313.40738 * 16 14 13 18 18 C 1.38181 * 120.28655 * 179.78479 * 17 16 14 19 19 C 1.38018 * 120.59781 * 0.49600 * 18 17 16 20 20 C 1.39488 * 120.06618 * 359.74012 * 19 18 17 21 21 N 1.36214 * 133.65830 * 180.02562 * 20 19 18 22 22 C 1.30601 * 108.67725 * 179.97438 * 21 20 19 23 23 O 1.35191 * 124.94290 * 179.97438 * 22 21 20 24 24 O 1.34416 * 110.11281 * 0.02562 * 22 21 20 25 25 C 1.35021 * 108.21365 * 359.97438 * 24 22 21 26 26 C 1.47416 * 108.70199 * 1.27844 * 13 12 11 27 27 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99980 * 56.11887 * 10 9 7 29 29 H 1.09003 * 110.72389 * 88.02104 * 11 9 7 30 30 H 1.09003 * 110.87341 * 324.81991 * 11 9 7 31 31 H 1.08997 * 109.88333 * 262.77273 * 12 11 9 32 32 H 1.09001 * 109.87848 * 141.60846 * 12 11 9 33 33 H 1.07999 * 119.85889 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.69823 * 180.23552 * 18 17 16 35 35 H 1.08000 * 119.97014 * 179.75894 * 19 18 17 36 36 H 0.96703 * 113.99771 * 90.03269 * 23 22 21 37 37 H 1.09003 * 110.36707 * 94.48828 * 26 13 12 38 38 H 1.08999 * 110.36759 * 216.80491 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.3522 -2.5684 1.1082 11 6 2.2275 -3.7049 -0.0005 12 6 1.3978 -4.8215 -0.6689 13 7 0.3464 -4.1684 -1.4624 14 6 -0.6003 -4.8008 -2.1837 15 8 -1.3682 -4.1592 -2.8742 16 6 -0.7047 -6.2723 -2.1355 17 6 0.4391 -7.0621 -2.2596 18 6 0.3436 -8.4397 -2.2102 19 6 -0.8819 -9.0535 -2.0481 20 6 -2.0386 -8.2834 -1.9269 21 7 -3.3564 -8.5857 -1.7606 22 6 -4.0370 -7.4724 -1.7046 23 8 -5.3770 -7.3912 -1.5451 24 8 -3.2113 -6.4191 -1.8296 25 6 -1.9517 -6.8846 -1.9707 26 6 0.5030 -2.7075 -1.3433 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2773 -1.8356 1.1506 29 1 2.4976 -3.9825 1.0184 30 1 3.1189 -3.4829 -0.5873 31 1 0.9466 -5.4554 0.0944 32 1 2.0364 -5.4187 -1.3197 33 1 1.4037 -6.5944 -2.3909 34 1 1.2354 -9.0416 -2.3034 35 1 -0.9454 -10.1311 -2.0147 36 1 -5.6612 -7.3467 -0.6219 37 1 1.0939 -2.3203 -2.1735 38 1 -0.4728 -2.2226 -1.3127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647247188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:57 Heat of formation + Delta-G solvation = -97.000899 kcal Electronic energy + Delta-G solvation = -26688.318231 eV Core-core repulsion = 22690.100136 eV Total energy + Delta-G solvation = -3998.218095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.48956 -41.28561 -39.48835 -38.88768 -38.48090 -36.19779 -35.73576 -34.18031 -32.53117 -31.49976 -30.57888 -29.54464 -27.29885 -25.47066 -24.41924 -24.17602 -23.24966 -21.50798 -20.75937 -20.41701 -19.50057 -19.09016 -18.62347 -18.17050 -17.53913 -17.12862 -16.65459 -16.52531 -16.34479 -16.02111 -15.75935 -15.10136 -14.93359 -14.68337 -14.65111 -13.89457 -13.84336 -13.63081 -13.50718 -13.32801 -13.19345 -12.83974 -12.79708 -12.57221 -12.42848 -12.33715 -12.26129 -12.06296 -12.00539 -11.26620 -11.11153 -10.66045 -10.37011 -9.98889 -9.67999 -9.51130 -8.27901 -6.45380 -0.71054 -0.05661 0.75545 0.96848 1.43159 1.43814 1.52087 1.55306 1.95495 2.27190 2.37252 2.50406 2.98634 3.17710 3.51037 3.71441 3.77100 3.87797 4.05091 4.09791 4.13874 4.24627 4.35354 4.57162 4.64057 4.69816 4.78185 4.87494 4.98073 5.06586 5.13732 5.17390 5.26314 5.37785 5.43410 5.53573 5.74077 6.01056 6.11149 6.25835 6.49105 6.64226 6.96553 7.27303 7.35068 8.77656 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.003610 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.362613 B = 7753.504648 C = 8531.376149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.024 3.976 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.231 3.769 10 O -0.592 6.592 11 C -0.112 4.112 12 C 0.100 3.900 13 N -0.601 5.601 14 C 0.555 3.445 15 O -0.595 6.595 16 C -0.117 4.117 17 C -0.047 4.047 18 C -0.094 4.094 19 C -0.032 4.032 20 C 0.012 3.988 21 N -0.472 5.472 22 C 0.415 3.585 23 O -0.406 6.406 24 O -0.246 6.246 25 C 0.026 3.974 26 C 0.104 3.896 27 H 0.270 0.730 28 H 0.376 0.624 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.175 0.825 34 H 0.203 0.797 35 H 0.179 0.821 36 H 0.445 0.555 37 H 0.053 0.947 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -19.509 -1.052 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.191 3.809 10 O -0.401 6.401 11 C -0.150 4.150 12 C -0.021 4.021 13 N -0.332 5.332 14 C 0.345 3.655 15 O -0.477 6.477 16 C -0.121 4.121 17 C -0.065 4.065 18 C -0.112 4.112 19 C -0.050 4.050 20 C -0.099 4.099 21 N -0.216 5.216 22 C 0.165 3.835 23 O -0.218 6.218 24 O -0.140 6.140 25 C -0.025 4.025 26 C -0.019 4.019 27 H 0.079 0.921 28 H 0.227 0.773 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.192 0.808 34 H 0.220 0.780 35 H 0.196 0.804 36 H 0.311 0.689 37 H 0.071 0.929 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.721 -20.184 -1.823 20.340 hybrid contribution -0.979 3.137 0.273 3.298 sum 0.742 -17.047 -1.551 17.134 Atomic orbital electron populations 1.69690 1.07448 1.28597 1.50502 1.25879 0.95670 1.03104 0.92999 0.85468 0.78225 0.78023 0.79109 1.19287 1.21452 1.19173 1.21851 0.94260 0.91049 1.52165 0.90601 1.19929 0.86213 0.93714 0.81077 1.86054 1.51269 1.52547 1.50206 1.22677 0.97489 0.92969 1.01832 1.22475 0.88701 0.96032 0.94860 1.48709 1.29668 1.08578 1.46236 1.18415 0.79752 0.88023 0.79310 1.90754 1.44651 1.68926 1.43397 1.18782 0.90823 0.91877 1.10657 1.21834 0.96176 0.94711 0.93812 1.21592 0.98813 0.93007 0.97798 1.21039 0.87700 1.01769 0.94503 1.20051 0.92482 0.90361 1.07044 1.71073 1.03009 1.24809 1.22698 1.22802 0.85476 0.79111 0.96106 1.84863 1.06959 1.93573 1.36397 1.84544 1.17120 1.38599 1.73725 1.20096 0.82745 0.94517 1.05132 1.22994 0.99853 0.78227 1.00777 0.92073 0.77322 0.89420 0.88363 0.90923 0.87074 0.80806 0.78024 0.80390 0.68950 0.92871 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.77 10.72 21.45 0.23 -50.54 16 2 C 0.02 1.23 5.30 84.65 0.45 1.68 16 3 Si 0.97 41.25 29.54 68.60 2.03 43.28 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.56 -28.20 8.25 25.60 0.21 -27.99 16 8 H 0.08 3.64 7.76 -2.91 -0.02 3.62 16 9 C 0.23 11.00 0.89 -10.07 -0.01 10.99 16 10 O -0.59 -30.80 13.19 -148.98 -1.97 -32.76 16 11 C -0.11 -3.93 6.12 31.78 0.19 -3.74 16 12 C 0.10 3.04 5.62 86.73 0.49 3.53 16 13 N -0.60 -24.62 3.32 -815.07 -2.71 -27.33 16 14 C 0.56 23.79 7.41 86.71 0.64 24.43 16 15 O -0.59 -31.57 17.30 -3.97 -0.07 -31.64 16 16 C -0.12 -3.81 5.43 -20.09 -0.11 -3.92 16 17 C -0.05 -0.93 8.52 22.57 0.19 -0.74 16 18 C -0.09 -1.14 10.00 22.20 0.22 -0.92 16 19 C -0.03 -0.52 10.09 22.52 0.23 -0.29 16 20 C 0.01 0.33 7.23 39.25 0.28 0.62 16 21 N -0.47 -13.36 11.38 -422.76 -4.81 -18.17 16 22 C 0.41 12.10 9.54 130.43 1.24 13.35 16 23 O -0.41 -8.50 13.62 -62.44 -0.85 -9.35 16 24 O -0.25 -9.16 10.77 11.47 0.12 -9.04 16 25 C 0.03 0.88 7.08 23.15 0.16 1.05 16 26 C 0.10 5.14 5.63 86.93 0.49 5.63 16 27 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 28 H 0.38 20.92 6.93 -74.06 -0.51 20.41 16 29 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.10 3.06 8.02 -2.39 -0.02 3.04 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.11 2.23 5.94 -2.39 -0.01 2.22 16 33 H 0.17 2.50 5.84 -2.91 -0.02 2.48 16 34 H 0.20 0.35 8.06 -2.91 -0.02 0.32 16 35 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.44 3.57 9.06 -74.06 -0.67 2.90 16 37 H 0.05 2.66 8.04 -2.39 -0.02 2.64 16 38 H 0.03 1.99 7.69 -2.39 -0.02 1.98 16 Total: -1.00 -81.13 328.25 -3.37 -84.50 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.03 Total: 27.37 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 4.69 Total: 23.67 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -7.29 Total: -96.04 kcal Atomic # 8 Polarization: -80.02 SS G_CDS: -2.76 Total: -82.78 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -81.13 -3.37 -84.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647247188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.500 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds