Wall clock time and date at job start Tue Mar 31 2020 12:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47488 * 2 1 4 4 C 1.50700 * 109.47011 * 240.00275 * 2 1 3 5 5 H 1.08003 * 119.99653 * 274.88043 * 4 2 1 6 6 C 1.37875 * 120.00317 * 94.87541 * 4 2 1 7 7 N 1.31517 * 120.00075 * 183.88025 * 6 4 2 8 8 Si 1.86797 * 119.99863 * 3.88303 * 6 4 2 9 9 H 1.48503 * 109.47234 * 84.42350 * 8 6 4 10 10 H 1.48497 * 109.47377 * 204.42120 * 8 6 4 11 11 H 1.48500 * 109.47231 * 324.42333 * 8 6 4 12 12 N 1.46896 * 109.47527 * 120.00308 * 2 1 3 13 13 C 1.46896 * 111.00412 * 176.04700 * 12 2 1 14 14 C 1.46900 * 110.99787 * 299.99816 * 12 2 1 15 15 C 1.50707 * 109.47418 * 169.99781 * 14 12 2 16 16 C 1.33635 * 122.74527 * 94.99877 * 15 14 12 17 17 S 1.76203 * 107.92109 * 179.80585 * 16 15 14 18 18 C 1.70978 * 90.28251 * 0.28593 * 17 16 15 19 19 C 1.50702 * 124.91661 * 179.97438 * 18 17 16 20 20 S 1.81397 * 109.46723 * 269.69220 * 19 18 17 21 21 C 1.81401 * 101.92016 * 180.02562 * 20 19 18 22 22 O 1.42100 * 108.58136 * 65.51536 * 20 19 18 23 23 O 1.42096 * 108.58016 * 294.48409 * 20 19 18 24 24 N 1.29032 * 110.16794 * 359.70812 * 18 17 16 25 25 H 1.08999 * 109.47275 * 66.76670 * 1 2 3 26 26 H 1.09003 * 109.47393 * 186.76876 * 1 2 3 27 27 H 1.09008 * 109.46709 * 306.76686 * 1 2 3 28 28 H 0.96998 * 119.99868 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47499 * 183.95396 * 13 12 2 30 30 H 1.09006 * 109.46846 * 303.94908 * 13 12 2 31 31 H 1.08996 * 109.47276 * 63.95109 * 13 12 2 32 32 H 1.09006 * 109.47443 * 50.00002 * 14 12 2 33 33 H 1.09001 * 109.47292 * 290.00213 * 14 12 2 34 34 H 1.07995 * 126.04146 * 0.02562 * 16 15 14 35 35 H 1.09002 * 109.46842 * 149.69289 * 19 18 17 36 36 H 1.08996 * 109.47078 * 29.69378 * 19 18 17 37 37 H 1.09000 * 109.47078 * 300.00516 * 21 20 19 38 38 H 1.09007 * 109.47446 * 59.99861 * 21 20 19 39 39 H 1.08993 * 109.47418 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1372 -1.7853 -1.2284 6 6 2.3577 0.0119 -2.3589 7 7 2.7230 -0.6130 -3.4570 8 14 2.2799 1.8780 -2.3281 9 1 3.5484 2.4173 -1.7755 10 1 2.0852 2.3882 -3.7090 11 1 1.1444 2.3121 -1.4753 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0264 2.4210 15 6 1.8581 -0.8912 3.6159 16 6 2.9597 -0.7344 4.3559 17 16 2.9242 -1.9374 5.6428 18 6 1.4357 -2.5370 5.0528 19 6 0.6654 -3.6814 5.6594 20 16 1.1909 -5.2384 4.8913 21 6 0.1549 -6.4510 5.7556 22 8 2.5492 -5.4766 5.2342 23 8 0.8146 -5.2171 3.5213 24 7 1.0646 -1.8642 4.0162 25 1 -0.3634 0.4054 -0.9443 26 1 -0.3634 -1.0205 0.1211 27 1 -0.3633 0.6152 0.8233 28 1 2.9524 -0.1048 -4.2508 29 1 3.8164 -1.3722 2.0498 30 1 3.8069 -1.2916 0.2717 31 1 3.9192 0.2043 1.2299 32 1 0.4723 0.1324 2.3564 33 1 2.0519 0.9346 2.5279 34 1 3.7332 0.0021 4.1958 35 1 -0.4008 -3.5332 5.4877 36 1 0.8586 -3.7217 6.7314 37 1 0.3627 -6.4100 6.8248 38 1 -0.8962 -6.2212 5.5807 39 1 0.3759 -7.4504 5.3810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649720290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:56 Heat of formation + Delta-G solvation = -3.533752 kcal Electronic energy + Delta-G solvation = -22617.157271 eV Core-core repulsion = 19201.189039 eV Total energy + Delta-G solvation = -3415.968233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01173 -37.15758 -36.95921 -36.16877 -33.27464 -32.21789 -30.28124 -29.86096 -28.61503 -27.46923 -24.87612 -23.88335 -22.48432 -19.88510 -19.33676 -19.09694 -17.75101 -17.05846 -16.92087 -16.41182 -16.17559 -15.39085 -15.00055 -14.65171 -14.18751 -13.92139 -13.79837 -13.54190 -13.48425 -13.45343 -12.81492 -12.69705 -12.45011 -12.25290 -12.19534 -12.12311 -11.71183 -11.45515 -11.24689 -11.11546 -11.01003 -10.78522 -10.61602 -10.28201 -10.14614 -9.75753 -9.65825 -9.38562 -9.07681 -8.69736 -8.55024 -7.28173 -6.04637 -4.02770 -0.46417 0.69682 1.24307 1.63467 2.41607 2.81886 3.27058 3.27738 3.36285 3.37647 3.67994 3.81608 4.28576 4.41997 4.43528 4.60342 4.79020 4.94484 5.10100 5.22964 5.26852 5.32858 5.43860 5.81808 5.96281 6.17711 6.19443 6.30780 6.49684 6.64711 6.71270 6.90598 7.07403 7.36589 7.65765 7.76515 8.02317 8.13753 8.69844 9.08109 9.58412 11.08427 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.003643 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.511378 B = 7684.166803 C = 8340.295396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 H 0.001 0.999 4 C -0.499 4.499 5 H 0.083 0.917 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.522 5.522 13 C 0.035 3.965 14 C 0.115 3.885 15 C 0.096 3.904 16 C -0.243 4.243 17 S 0.132 5.868 18 C 0.024 3.976 19 C -0.532 4.532 20 S 2.416 3.584 21 C -0.657 4.657 22 O -0.928 6.928 23 O -0.906 6.906 24 N -0.422 5.422 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.020 0.980 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.009 0.991 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 -5.521 24.691 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.018 0.982 4 C -0.537 4.537 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.191 1.191 12 N -0.247 5.247 13 C -0.113 4.113 14 C -0.016 4.016 15 C -0.037 4.037 16 C -0.383 4.383 17 S 0.386 5.614 18 C -0.254 4.254 19 C -0.661 4.661 20 S 2.594 3.406 21 C -0.806 4.806 22 O -0.925 6.925 23 O -0.903 6.903 24 N -0.138 5.138 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.028 0.972 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.198 0.802 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.248 -6.510 24.419 25.480 hybrid contribution -0.460 2.482 -0.116 2.527 sum -3.708 -4.028 24.303 24.912 Atomic orbital electron populations 1.21998 0.97741 1.00767 0.98737 1.19751 0.92375 0.91954 0.88405 0.98165 1.20895 1.42859 0.96074 0.93904 0.89940 1.24989 0.94754 0.97850 0.95438 1.69894 1.46044 1.35597 1.01940 0.86950 0.78932 0.87005 0.77181 1.20425 1.21438 1.19076 1.62097 1.10118 1.52017 1.00435 1.22255 0.87834 0.98672 1.02526 1.20759 1.02188 0.91746 0.86859 1.20363 0.90294 0.94948 0.98116 1.27063 1.04466 1.06201 1.00610 1.83848 1.20632 1.27061 1.29819 1.25390 0.98521 1.03046 0.98461 1.29052 1.10889 1.14479 1.11684 1.08370 0.77076 0.77945 0.77189 1.30316 1.16886 1.18407 1.15026 1.93620 1.30155 1.83666 1.85028 1.93703 1.83871 1.84854 1.27892 1.66002 1.32310 1.05243 1.10219 0.93151 0.92387 0.96057 0.92637 0.93816 0.89275 0.97223 0.88874 0.94050 0.80231 0.82229 0.83472 0.85337 0.85052 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.76 37.16 0.33 -2.67 16 2 C 0.18 4.40 1.70 -68.87 -0.12 4.28 16 3 H 0.00 0.02 5.36 -51.93 -0.28 -0.26 16 4 C -0.50 -14.15 7.39 -34.44 -0.25 -14.41 16 5 H 0.08 2.62 8.05 -52.48 -0.42 2.20 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 8 Si 0.87 21.55 26.95 -169.99 -4.58 16.97 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.30 6.88 56.52 0.39 -5.92 16 12 N -0.52 -11.53 4.61 -237.74 -1.10 -12.62 16 13 C 0.04 0.74 8.99 60.06 0.54 1.28 16 14 C 0.12 2.10 5.22 -4.97 -0.03 2.08 16 15 C 0.10 1.60 5.57 -84.22 -0.47 1.13 16 16 C -0.24 -3.36 9.88 29.12 0.29 -3.08 16 17 S 0.13 1.58 23.18 -107.50 -2.49 -0.91 16 18 C 0.02 0.32 6.65 -13.45 -0.09 0.23 16 19 C -0.53 -4.27 6.39 36.01 0.23 -4.04 16 20 S 2.42 23.54 5.34 -107.50 -0.57 22.97 16 21 C -0.66 -2.81 10.62 101.05 1.07 -1.74 16 22 O -0.93 -11.80 18.10 -57.83 -1.05 -12.85 16 23 O -0.91 -14.05 18.10 -57.83 -1.05 -15.09 16 24 N -0.42 -7.10 10.53 -8.05 -0.08 -7.19 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.02 0.40 6.57 -51.92 -0.34 0.06 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.04 0.82 6.47 -51.93 -0.34 0.49 16 30 H 0.09 2.10 6.82 -51.93 -0.35 1.75 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 1.69 5.97 -51.93 -0.31 1.38 16 33 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.16 0.93 8.14 -51.92 -0.42 0.50 16 36 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 38 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -38.66 347.31 -8.92 -47.58 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.41 Total: -2.42 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 1.40 Total: -14.97 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.41 Total: -46.51 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -2.09 Total: -27.95 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.58 Total: 16.97 kcal Atomic # 16 Polarization: 25.12 SS G_CDS: -3.07 Total: 22.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.66 -8.92 -47.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649720290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.050 kcal (2) G-P(sol) polarization free energy of solvation -38.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds