Wall clock time and date at job start Tue Mar 31 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47488 * 2 1 4 4 C 1.50700 * 109.47011 * 240.00275 * 2 1 3 5 5 H 1.08003 * 119.99653 * 274.88043 * 4 2 1 6 6 C 1.37875 * 120.00317 * 94.87541 * 4 2 1 7 7 N 1.31517 * 120.00075 * 183.88025 * 6 4 2 8 8 Si 1.86797 * 119.99863 * 3.88303 * 6 4 2 9 9 H 1.48503 * 109.47234 * 84.42350 * 8 6 4 10 10 H 1.48497 * 109.47377 * 204.42120 * 8 6 4 11 11 H 1.48500 * 109.47231 * 324.42333 * 8 6 4 12 12 N 1.46896 * 109.47527 * 120.00308 * 2 1 3 13 13 C 1.46896 * 111.00412 * 176.04700 * 12 2 1 14 14 C 1.46900 * 110.99787 * 299.99816 * 12 2 1 15 15 C 1.50707 * 109.47418 * 169.99781 * 14 12 2 16 16 C 1.33635 * 122.74527 * 94.99877 * 15 14 12 17 17 S 1.76203 * 107.92109 * 179.80585 * 16 15 14 18 18 C 1.70978 * 90.28251 * 0.28593 * 17 16 15 19 19 C 1.50702 * 124.91661 * 179.97438 * 18 17 16 20 20 S 1.81397 * 109.46723 * 269.69220 * 19 18 17 21 21 C 1.81401 * 101.92016 * 180.02562 * 20 19 18 22 22 O 1.42100 * 108.58136 * 65.51536 * 20 19 18 23 23 O 1.42096 * 108.58016 * 294.48409 * 20 19 18 24 24 N 1.29032 * 110.16794 * 359.70812 * 18 17 16 25 25 H 1.08999 * 109.47275 * 66.76670 * 1 2 3 26 26 H 1.09003 * 109.47393 * 186.76876 * 1 2 3 27 27 H 1.09008 * 109.46709 * 306.76686 * 1 2 3 28 28 H 0.96998 * 119.99868 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47499 * 183.95396 * 13 12 2 30 30 H 1.09006 * 109.46846 * 303.94908 * 13 12 2 31 31 H 1.08996 * 109.47276 * 63.95109 * 13 12 2 32 32 H 1.09006 * 109.47443 * 50.00002 * 14 12 2 33 33 H 1.09001 * 109.47292 * 290.00213 * 14 12 2 34 34 H 1.07995 * 126.04146 * 0.02562 * 16 15 14 35 35 H 1.09002 * 109.46842 * 149.69289 * 19 18 17 36 36 H 1.08996 * 109.47078 * 29.69378 * 19 18 17 37 37 H 1.09000 * 109.47078 * 300.00516 * 21 20 19 38 38 H 1.09007 * 109.47446 * 59.99861 * 21 20 19 39 39 H 1.08993 * 109.47418 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1372 -1.7853 -1.2284 6 6 2.3577 0.0119 -2.3589 7 7 2.7230 -0.6130 -3.4570 8 14 2.2799 1.8780 -2.3281 9 1 3.5484 2.4173 -1.7755 10 1 2.0852 2.3882 -3.7090 11 1 1.1444 2.3121 -1.4753 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0264 2.4210 15 6 1.8581 -0.8912 3.6159 16 6 2.9597 -0.7344 4.3559 17 16 2.9242 -1.9374 5.6428 18 6 1.4357 -2.5370 5.0528 19 6 0.6654 -3.6814 5.6594 20 16 1.1909 -5.2384 4.8913 21 6 0.1549 -6.4510 5.7556 22 8 2.5492 -5.4766 5.2342 23 8 0.8146 -5.2171 3.5213 24 7 1.0646 -1.8642 4.0162 25 1 -0.3634 0.4054 -0.9443 26 1 -0.3634 -1.0205 0.1211 27 1 -0.3633 0.6152 0.8233 28 1 2.9524 -0.1048 -4.2508 29 1 3.8164 -1.3722 2.0498 30 1 3.8069 -1.2916 0.2717 31 1 3.9192 0.2043 1.2299 32 1 0.4723 0.1324 2.3564 33 1 2.0519 0.9346 2.5279 34 1 3.7332 0.0021 4.1958 35 1 -0.4008 -3.5332 5.4877 36 1 0.8586 -3.7217 6.7314 37 1 0.3627 -6.4100 6.8248 38 1 -0.8962 -6.2212 5.5807 39 1 0.3759 -7.4504 5.3810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649720290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:55 Heat of formation + Delta-G solvation = -36.890635 kcal Electronic energy + Delta-G solvation = -22618.603734 eV Core-core repulsion = 19201.189039 eV Total energy + Delta-G solvation = -3417.414696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13496 -38.63638 -38.01948 -37.03602 -34.89737 -33.71956 -31.87875 -30.52913 -29.68949 -28.88934 -26.82863 -25.38369 -23.77283 -21.28648 -20.83918 -19.89708 -19.17103 -18.70417 -17.79840 -17.27985 -16.95622 -16.92298 -16.24347 -16.20167 -15.73350 -15.15847 -14.95620 -14.69379 -14.55695 -14.30207 -13.99784 -13.88376 -13.81890 -13.46654 -13.20962 -13.09113 -13.01870 -12.97832 -12.83766 -12.64235 -12.30889 -12.26537 -12.06687 -11.84038 -11.79129 -11.74061 -11.11693 -10.75510 -10.70597 -10.40300 -9.76220 -8.96900 -8.27850 -6.31712 -1.17007 -0.27984 0.28646 0.60089 1.32088 1.34254 1.45468 1.66170 1.80951 2.33327 2.53342 2.99717 3.04326 3.09232 3.41822 3.62091 3.97769 4.13234 4.14266 4.22313 4.30918 4.38651 4.48345 4.51976 4.56863 4.61145 4.80486 4.83910 4.90775 4.99211 5.01925 5.11271 5.23243 5.47245 5.68025 6.07749 6.35219 6.66428 6.72644 6.77929 7.33773 8.89597 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.003643 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.511378 B = 7684.166803 C = 8340.295396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.185 3.815 3 H 0.008 0.992 4 C -0.501 4.501 5 H 0.026 0.974 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.941 3.059 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.243 1.243 12 N -0.545 5.545 13 C 0.045 3.955 14 C 0.118 3.882 15 C 0.065 3.935 16 C -0.248 4.248 17 S 0.185 5.815 18 C 0.010 3.990 19 C -0.527 4.527 20 S 2.395 3.605 21 C -0.620 4.620 22 O -0.973 6.973 23 O -0.985 6.985 24 N -0.467 5.467 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.266 0.734 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.200 0.800 35 H 0.185 0.815 36 H 0.199 0.801 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -4.363 28.754 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.078 3.922 3 H 0.025 0.975 4 C -0.539 4.539 5 H 0.044 0.956 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.765 3.235 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.167 1.167 12 N -0.270 5.270 13 C -0.104 4.104 14 C -0.012 4.012 15 C -0.067 4.067 16 C -0.388 4.388 17 S 0.440 5.560 18 C -0.268 4.268 19 C -0.658 4.658 20 S 2.581 3.419 21 C -0.774 4.774 22 O -0.970 6.970 23 O -0.982 6.982 24 N -0.183 5.183 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.217 0.783 35 H 0.202 0.798 36 H 0.217 0.783 37 H 0.188 0.812 38 H 0.177 0.823 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.280 -5.341 28.485 29.296 hybrid contribution -0.147 1.910 -1.180 2.250 sum -4.427 -3.431 27.305 27.873 Atomic orbital electron populations 1.21884 0.96285 1.00574 0.99890 1.19604 0.93412 0.91595 0.87631 0.97498 1.21000 1.42852 0.93761 0.96327 0.95578 1.25871 0.94264 1.03579 0.94651 1.70062 1.47869 1.37967 1.02942 0.85832 0.80077 0.79905 0.77717 1.19222 1.21142 1.16662 1.61910 1.10547 1.53084 1.01420 1.22100 0.87722 0.99348 1.01184 1.20719 1.02044 0.92734 0.85662 1.20186 0.91875 0.96024 0.98652 1.27334 1.03853 1.06828 1.00810 1.83621 1.19293 1.25141 1.27966 1.26202 0.99432 1.03470 0.97663 1.29196 1.11681 1.10894 1.13999 1.08424 0.77276 0.79574 0.76625 1.30014 1.16161 1.15148 1.16083 1.93560 1.33570 1.84532 1.85302 1.93623 1.84816 1.86371 1.33397 1.65982 1.33929 1.06419 1.12013 0.93657 0.93957 0.92491 0.92480 0.92098 0.93299 0.95583 0.89161 0.92014 0.78262 0.79794 0.78347 0.81246 0.82346 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.76 71.98 0.63 -5.05 16 2 C 0.18 9.01 1.70 44.17 0.08 9.08 16 3 H 0.01 0.35 5.36 -2.39 -0.01 0.34 16 4 C -0.50 -29.79 7.39 25.60 0.19 -29.61 16 5 H 0.03 1.79 8.05 -2.91 -0.02 1.77 16 6 C 0.01 0.81 5.47 84.65 0.46 1.27 16 7 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 8 Si 0.94 44.49 26.95 68.60 1.85 46.34 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.24 -10.54 6.88 99.48 0.68 -9.86 16 12 N -0.54 -24.40 4.61 -906.06 -4.18 -28.58 16 13 C 0.04 1.91 8.99 127.69 1.15 3.06 16 14 C 0.12 4.21 5.22 85.56 0.45 4.66 16 15 C 0.07 2.13 5.57 41.52 0.23 2.36 16 16 C -0.25 -6.43 9.88 66.77 0.66 -5.77 16 17 S 0.18 3.99 23.18 -56.49 -1.31 2.68 16 18 C 0.01 0.25 6.65 88.52 0.59 0.84 16 19 C -0.53 -6.92 6.39 71.24 0.45 -6.47 16 20 S 2.40 44.23 5.34 -56.49 -0.30 43.92 16 21 C -0.62 -2.65 10.62 113.37 1.20 -1.45 16 22 O -0.97 -24.45 18.10 -127.37 -2.31 -26.76 16 23 O -0.98 -32.12 18.10 -127.37 -2.30 -34.42 16 24 N -0.47 -15.47 10.53 -179.39 -1.89 -17.36 16 25 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 2.09 6.57 -2.38 -0.02 2.08 16 28 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.06 2.33 6.47 -2.39 -0.02 2.32 16 30 H 0.05 2.45 6.82 -2.38 -0.02 2.43 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 3.18 5.97 -2.38 -0.01 3.17 16 33 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 34 H 0.20 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.18 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.20 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.17 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.16 -0.02 8.14 -2.39 -0.02 -0.03 16 39 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -92.42 347.31 -3.02 -95.44 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.03 Total: 6.16 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 6.09 Total: -27.07 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -5.77 Total: -106.29 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -4.61 Total: -61.18 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.85 Total: 46.34 kcal Atomic # 16 Polarization: 48.21 SS G_CDS: -1.61 Total: 46.60 kcal Total: -92.42 -3.02 -95.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649720290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.550 kcal (2) G-P(sol) polarization free energy of solvation -92.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds