Wall clock time and date at job start Tue Mar 31 2020 12:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47193 * 2 1 4 4 C 1.50705 * 109.46627 * 240.00473 * 2 1 3 5 5 H 1.08007 * 119.99622 * 239.99950 * 4 2 1 6 6 C 1.37875 * 120.00208 * 60.00272 * 4 2 1 7 7 N 1.31515 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99916 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47481 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47123 * 119.99736 * 8 6 4 11 11 H 1.48497 * 109.47256 * 239.99799 * 8 6 4 12 12 N 1.46497 * 109.47068 * 120.00717 * 2 1 3 13 13 C 1.34773 * 119.99824 * 274.99626 * 12 2 1 14 14 O 1.21584 * 120.00080 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99974 * 180.02562 * 13 12 2 16 16 C 1.38946 * 120.00001 * 180.02562 * 15 13 12 17 17 N 1.30037 * 125.57877 * 0.02562 * 16 15 13 18 18 N 1.26251 * 117.71276 * 179.97438 * 17 16 15 19 19 C 1.30452 * 116.34847 * 0.02562 * 18 17 16 20 20 C 1.47836 * 126.16323 * 180.02562 * 19 18 17 21 21 C 1.39565 * 120.14001 * 0.02562 * 20 19 18 22 22 C 1.37966 * 119.85094 * 179.97438 * 21 20 19 23 23 C 1.38355 * 120.14556 * 359.97438 * 22 21 20 24 24 C 1.38356 * 120.28797 * 0.04435 * 23 22 21 25 25 C 1.37965 * 120.14768 * 359.95886 * 24 23 22 26 26 S 1.71290 * 125.58089 * 180.32097 * 16 15 13 27 27 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46939 * 299.99757 * 1 2 3 29 29 H 1.09005 * 109.47145 * 59.99353 * 1 2 3 30 30 H 0.97001 * 120.00222 * 180.02562 * 7 6 4 31 31 H 0.97000 * 120.00180 * 94.99957 * 12 2 1 32 32 H 0.97000 * 120.00030 * 0.02562 * 15 13 12 33 33 H 1.07998 * 120.08063 * 359.69998 * 21 20 19 34 34 H 1.08000 * 119.93085 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.86123 * 180.02562 * 23 22 21 36 36 H 1.08001 * 119.92845 * 179.97438 * 24 23 22 37 37 H 1.07993 * 120.07163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3223 -1.1193 -4.0081 9 1 3.1471 -2.2862 -3.6041 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3570 14 8 1.8575 1.1611 2.4119 15 7 2.5968 -0.6538 3.4573 16 6 2.7291 0.0391 4.6544 17 7 2.4512 1.2965 4.8354 18 7 2.6270 1.7763 5.9899 19 6 3.0756 0.9530 6.8969 20 6 3.3572 1.2815 8.3105 21 6 3.1441 2.5767 8.7848 22 6 3.4083 2.8766 10.1053 23 6 3.8831 1.8966 10.9588 24 6 4.0969 0.6109 10.4948 25 6 3.8367 0.2978 9.1765 26 16 3.2915 -0.6214 6.1314 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 0.7081 1.1611 -3.4844 31 1 2.2490 -1.6319 1.1524 32 1 2.8282 -1.5948 3.4135 33 1 2.7773 3.3436 8.1187 34 1 3.2443 3.8785 10.4736 35 1 4.0881 2.1364 11.9917 36 1 4.4681 -0.1495 11.1660 37 1 4.0036 -0.7063 8.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649757271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:08 Heat of formation + Delta-G solvation = 48.506154 kcal Electronic energy + Delta-G solvation = -22427.290605 eV Core-core repulsion = 18910.427792 eV Total energy + Delta-G solvation = -3516.862813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43761 -41.11627 -39.91725 -37.23820 -36.18018 -34.44496 -33.49998 -31.94614 -31.17617 -29.93509 -27.41641 -27.23139 -24.75727 -23.55231 -23.31888 -22.22540 -20.94756 -20.80751 -19.43358 -18.73813 -18.08400 -17.39519 -17.32569 -16.91480 -16.40168 -16.12505 -15.92144 -15.58791 -15.16877 -14.84823 -14.45243 -14.36723 -14.28085 -14.02403 -13.78464 -13.07068 -12.98618 -12.77472 -12.59450 -12.50610 -12.29015 -12.12430 -12.11466 -11.76211 -11.49424 -11.12715 -11.06229 -10.94323 -10.63472 -10.32113 -9.92542 -9.86540 -9.26218 -8.18713 -6.36550 -0.95618 -0.63483 0.00323 0.43522 0.45820 1.38813 1.45542 1.48163 1.54348 1.58983 2.15074 2.40080 2.85193 2.86744 3.12297 3.23442 3.71010 3.93598 4.01672 4.14968 4.30003 4.52532 4.62428 4.69692 4.87101 4.89549 4.91276 5.05454 5.11045 5.27288 5.45178 5.49341 5.52402 5.55132 5.56509 5.72368 5.97535 5.98849 6.06057 6.70349 6.98425 7.30471 7.48338 7.61949 8.88237 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.043763 B = 0.002265 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.657994 B =12360.342189 C =12720.862430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.288 3.712 3 H -0.002 1.002 4 C -0.543 4.543 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.977 3.023 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.286 1.286 12 N -0.703 5.703 13 C 0.687 3.313 14 O -0.587 6.587 15 N -0.620 5.620 16 C 0.223 3.777 17 N -0.321 5.321 18 N -0.260 5.260 19 C 0.023 3.977 20 C -0.045 4.045 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.099 4.099 26 S 0.229 5.771 27 H 0.045 0.955 28 H 0.008 0.992 29 H 0.068 0.932 30 H 0.266 0.734 31 H 0.408 0.592 32 H 0.441 0.559 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.396 -8.443 28.188 30.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.016 0.984 4 C -0.581 4.581 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.802 3.198 9 H -0.180 1.180 10 H -0.205 1.205 11 H -0.212 1.212 12 N -0.357 5.357 13 C 0.384 3.616 14 O -0.462 6.462 15 N -0.276 5.276 16 C -0.147 4.147 17 N -0.166 5.166 18 N -0.097 5.097 19 C -0.256 4.256 20 C -0.050 4.050 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.119 4.119 26 S 0.472 5.528 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.283 0.717 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.897 -7.071 27.660 29.621 hybrid contribution -0.002 -0.480 -1.582 1.653 sum 7.894 -7.551 26.078 28.273 Atomic orbital electron populations 1.21933 0.98245 0.99718 0.99521 1.18341 0.91024 0.91732 0.80429 0.98374 1.21532 1.32672 1.13685 0.90257 0.90239 1.25850 0.94899 0.95613 1.02484 1.70074 1.36941 1.23970 1.24657 0.85218 0.78023 0.78457 0.78122 1.18017 1.20480 1.21226 1.45412 1.68493 1.14163 1.07635 1.16313 0.79116 0.85175 0.80955 1.91024 1.55472 1.15866 1.83828 1.41856 1.67247 1.14143 1.04401 1.25963 1.01344 0.93372 0.94065 1.71610 1.22387 1.09197 1.13428 1.71804 1.14107 1.29088 0.94736 1.28365 1.04819 0.92089 1.00344 1.17827 1.04698 0.96140 0.86296 1.21373 0.98183 0.94996 0.97007 1.21431 0.99004 1.01371 0.92225 1.21781 0.95971 0.92693 1.01167 1.21467 0.99186 0.97907 0.94680 1.21430 0.97995 0.98327 0.94197 1.83793 1.61265 1.10417 0.97334 0.93584 0.97326 0.91283 0.92510 0.75555 0.71724 0.86465 0.83387 0.82374 0.81997 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.96 9.26 71.98 0.67 -6.30 16 2 C 0.29 15.04 2.56 44.25 0.11 15.16 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.54 -28.26 8.73 25.60 0.22 -28.04 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 8 Si 0.98 41.59 29.54 68.60 2.03 43.62 16 9 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.70 -28.90 5.07 -461.42 -2.34 -31.24 16 13 C 0.69 29.19 8.49 179.06 1.52 30.71 16 14 O -0.59 -31.98 14.68 -3.98 -0.06 -32.04 16 15 N -0.62 -18.97 5.41 -327.00 -1.77 -20.74 16 16 C 0.22 7.24 8.13 179.11 1.46 8.70 16 17 N -0.32 -13.37 9.73 -59.11 -0.57 -13.95 16 18 N -0.26 -9.55 11.33 -49.46 -0.56 -10.11 16 19 C 0.02 0.61 7.44 87.44 0.65 1.26 16 20 C -0.04 -0.94 5.87 -20.10 -0.12 -1.06 16 21 C -0.09 -1.91 9.69 22.53 0.22 -1.69 16 22 C -0.12 -1.64 10.03 22.23 0.22 -1.42 16 23 C -0.10 -0.89 10.04 22.33 0.22 -0.67 16 24 C -0.11 -1.05 10.03 22.23 0.22 -0.83 16 25 C -0.10 -1.36 9.62 22.52 0.22 -1.14 16 26 S 0.23 4.68 22.35 -56.49 -1.26 3.41 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 3.89 6.07 -2.38 -0.01 3.87 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 31 H 0.41 13.11 8.55 -92.71 -0.79 12.31 16 32 H 0.44 8.52 8.83 -92.71 -0.82 7.70 16 33 H 0.12 2.76 7.85 -2.91 -0.02 2.74 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.14 1.35 7.36 -2.91 -0.02 1.33 16 Total: -1.00 -81.29 338.70 1.30 -79.99 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.47 Total: 18.00 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.07 Total: 15.75 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.00 Total: -128.72 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.06 Total: -32.04 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.26 Total: 3.41 kcal Total: -81.29 1.30 -79.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649757271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.493 kcal (2) G-P(sol) polarization free energy of solvation -81.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds