Wall clock time and date at job start Tue Mar 31 2020 12:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38348 * 127.14898 * 2 1 4 4 C 1.39771 * 126.56885 * 0.02562 * 3 2 1 5 5 H 1.08005 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.40077 * 120.00497 * 179.97438 * 4 3 2 7 7 N 1.30819 * 119.99630 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00322 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47058 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47238 * 120.00260 * 8 6 4 11 11 H 1.48504 * 109.47266 * 240.00295 * 8 6 4 12 12 N 1.33100 * 106.86774 * 180.02562 * 3 2 1 13 13 N 1.28513 * 109.74608 * 359.72500 * 12 3 2 14 14 C 1.32383 * 110.20705 * 0.45330 * 13 12 3 15 15 S 1.76194 * 126.26260 * 179.81421 * 14 13 12 16 16 C 1.80999 * 100.00064 * 359.69331 * 15 14 13 17 17 H 1.09009 * 109.46703 * 304.99946 * 16 15 14 18 18 C 1.50696 * 109.47248 * 64.99649 * 16 15 14 19 19 N 1.34778 * 120.00198 * 63.19307 * 18 16 15 20 20 O 1.21281 * 120.00251 * 242.92128 * 18 16 15 21 21 C 1.50696 * 109.47320 * 185.00158 * 16 15 14 22 22 C 1.38235 * 120.00345 * 130.55544 * 21 16 15 23 23 C 1.38233 * 120.00049 * 179.78491 * 22 21 16 24 24 C 1.38241 * 119.99946 * 0.44733 * 23 22 21 25 25 C 1.38233 * 119.99717 * 359.80596 * 24 23 22 26 26 C 1.38234 * 120.00242 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47718 * 269.98470 * 1 2 3 28 28 H 1.08995 * 109.47271 * 29.98889 * 1 2 3 29 29 H 1.09004 * 109.47347 * 149.98526 * 1 2 3 30 30 H 0.97005 * 119.99738 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00448 * 184.74339 * 19 18 16 32 32 H 0.97008 * 119.99447 * 4.75347 * 19 18 16 33 33 H 1.08000 * 119.99944 * 359.97438 * 22 21 16 34 34 H 1.07999 * 119.99987 * 180.27240 * 23 22 21 35 35 H 1.07997 * 119.99772 * 179.83317 * 24 23 22 36 36 H 1.08004 * 119.99518 * 180.02562 * 25 24 23 37 37 H 1.07996 * 119.99866 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3004 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8593 2.7005 0.0014 6 6 2.8766 3.4569 0.0010 7 7 4.1475 3.1467 0.0004 8 14 2.3528 5.2499 0.0024 9 1 0.8701 5.3325 0.0034 10 1 2.8863 5.9205 1.2152 11 1 2.8856 5.9222 -1.2098 12 7 3.5489 0.6414 -0.0006 13 7 3.5369 -0.6437 0.0049 14 6 2.2904 -1.0894 -0.0005 15 16 1.7873 -2.7780 -0.0008 16 6 3.4059 -3.5881 -0.0016 17 1 3.9943 -3.2234 -0.8436 18 6 4.1243 -3.2763 1.2859 19 7 3.6126 -3.6929 2.4611 20 8 5.1656 -2.6548 1.2642 21 6 3.2216 -5.0786 -0.1258 22 6 3.9441 -5.7885 -1.0665 23 6 3.7783 -7.1563 -1.1774 24 6 2.8830 -7.8130 -0.3538 25 6 2.1567 -7.1024 0.5833 26 6 2.3259 -5.7352 0.6973 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8900 -0.5136 29 1 -0.3634 -0.8899 -0.5141 30 1 4.8178 3.8478 0.0004 31 1 4.0372 -3.4340 3.2939 32 1 2.8198 -4.2517 2.4740 33 1 4.6405 -5.2748 -1.7128 34 1 4.3460 -7.7115 -1.9094 35 1 2.7515 -8.8813 -0.4423 36 1 1.4575 -7.6156 1.2270 37 1 1.7586 -5.1801 1.4297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649785297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:56 Heat of formation + Delta-G solvation = 60.762992 kcal Electronic energy + Delta-G solvation = -23625.673713 eV Core-core repulsion = 20109.342397 eV Total energy + Delta-G solvation = -3516.331317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48841 -39.90155 -38.43439 -33.78901 -33.67877 -33.30152 -32.41201 -31.03719 -29.35874 -27.82237 -26.45321 -25.46545 -22.81755 -22.15159 -20.83624 -20.70148 -20.21435 -17.54581 -17.33319 -17.08300 -16.72397 -16.04479 -15.47297 -15.21517 -14.92802 -14.71790 -14.29224 -14.11778 -13.84145 -13.50093 -13.32168 -13.04943 -12.85164 -12.59406 -12.30182 -12.22838 -11.45690 -11.32396 -11.27787 -11.21255 -10.94243 -10.57670 -10.35305 -9.90651 -9.64665 -9.60282 -9.30943 -9.08796 -8.82912 -8.66604 -8.45779 -8.32582 -6.94274 -6.63362 -4.57588 0.97362 1.21928 1.83747 2.47179 2.91075 3.06787 3.11592 3.29534 3.36347 3.53209 3.87509 3.91975 4.22875 4.45993 4.47885 4.71324 4.82605 4.88128 5.06871 5.30574 5.34501 5.42118 5.51309 5.54067 5.78122 5.85769 5.89191 6.00953 6.25064 6.32389 6.38250 6.76946 6.79199 6.89794 7.10407 7.25137 7.48598 7.62074 7.90930 8.18660 8.64180 8.70882 8.86717 10.28820 10.67803 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027880 B = 0.003424 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.072142 B = 8176.150592 C = 8569.689553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.515 5.515 3 C 0.347 3.653 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.077 3.923 7 N -0.732 5.732 8 Si 0.921 3.079 9 H -0.262 1.262 10 H -0.272 1.272 11 H -0.272 1.272 12 N -0.328 5.328 13 N -0.256 5.256 14 C 0.017 3.983 15 S -0.011 6.011 16 C -0.052 4.052 17 H 0.134 0.866 18 C 0.539 3.461 19 N -0.855 5.855 20 O -0.499 6.499 21 C -0.064 4.064 22 C -0.096 4.096 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.279 0.721 31 H 0.401 0.599 32 H 0.395 0.605 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -17.431 1.274 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.103 3.897 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.149 4.149 7 N -0.356 5.356 8 Si 0.745 3.255 9 H -0.186 1.186 10 H -0.197 1.197 11 H -0.197 1.197 12 N -0.176 5.176 13 N -0.102 5.102 14 C -0.353 4.353 15 S 0.219 5.781 16 C -0.184 4.184 17 H 0.152 0.848 18 C 0.319 3.681 19 N -0.422 5.422 20 O -0.372 6.372 21 C -0.066 4.066 22 C -0.116 4.116 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.131 4.131 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.231 0.769 32 H 0.225 0.775 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.825 -17.400 1.042 18.379 hybrid contribution -0.868 1.457 0.297 1.722 sum -6.694 -15.943 1.339 17.343 Atomic orbital electron populations 1.21481 0.78707 1.02649 1.01506 1.46010 1.05905 1.05200 1.64685 1.21688 0.84816 0.88415 0.94773 1.18142 0.94700 0.86443 1.49393 0.89762 1.25817 0.94350 1.01320 0.93385 1.70034 1.00708 1.34940 1.29929 0.86066 0.79781 0.81027 0.78657 1.18558 1.19735 1.19711 1.75527 1.15040 0.97942 1.29106 1.74765 1.14330 1.07395 1.13733 1.25370 0.91980 0.92510 1.25440 1.84431 1.06179 0.91886 1.95629 1.22386 0.99618 0.94741 1.01667 0.84833 1.19713 0.84959 0.78625 0.84813 1.43749 1.33889 1.56422 1.08127 1.90816 1.22284 1.37469 1.86583 1.19166 0.98071 0.91744 0.97618 1.21109 0.98793 0.94323 0.97362 1.21151 0.98604 0.94163 0.99469 1.21198 0.96565 0.99936 0.95961 1.21100 0.99690 0.93758 0.98749 1.21059 0.97889 0.94822 0.99358 0.92664 0.90325 0.91698 0.90955 0.76872 0.77503 0.85305 0.85668 0.85945 0.85651 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.88 59.85 0.65 2.50 16 2 N -0.52 -12.57 3.26 -123.18 -0.40 -12.97 16 3 C 0.35 9.88 7.53 -154.81 -1.17 8.71 16 4 C -0.45 -12.00 9.04 -38.32 -0.35 -12.35 16 5 H 0.08 2.05 7.30 -52.48 -0.38 1.66 16 6 C 0.08 2.01 5.50 -17.29 -0.10 1.91 16 7 N -0.73 -20.66 11.94 55.56 0.66 -19.99 16 8 Si 0.92 18.80 29.56 -169.99 -5.03 13.77 16 9 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 12 N -0.33 -10.21 10.48 31.26 0.33 -9.88 16 13 N -0.26 -7.30 10.31 30.89 0.32 -6.98 16 14 C 0.02 0.43 7.85 -87.28 -0.69 -0.26 16 15 S -0.01 -0.20 20.21 -107.50 -2.17 -2.37 16 16 C -0.05 -0.87 2.36 -29.04 -0.07 -0.94 16 17 H 0.13 2.54 7.89 -51.91 -0.41 2.13 16 18 C 0.54 10.06 5.85 -10.99 -0.06 10.00 16 19 N -0.85 -12.02 8.66 31.22 0.27 -11.75 16 20 O -0.50 -11.89 17.26 5.56 0.10 -11.79 16 21 C -0.06 -0.84 4.78 -104.63 -0.50 -1.34 16 22 C -0.10 -1.13 9.67 -39.58 -0.38 -1.51 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 25 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.11 -1.19 7.99 -39.58 -0.32 -1.51 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 29 H 0.06 1.02 7.85 -51.93 -0.41 0.62 16 30 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 31 H 0.40 5.18 8.93 -40.82 -0.36 4.82 16 32 H 0.39 4.35 5.85 -40.82 -0.24 4.12 16 33 H 0.13 1.44 7.97 -52.49 -0.42 1.02 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.13 1.21 5.93 -52.49 -0.31 0.90 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -37.45 334.43 -8.80 -46.25 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.75 Total: 9.76 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.17 Total: 0.91 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 1.18 Total: -61.57 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.10 Total: -11.79 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.17 Total: -2.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.45 -8.80 -46.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649785297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.011 kcal (2) G-P(sol) polarization free energy of solvation -37.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds