Wall clock time and date at job start Tue Mar 31 2020 12:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38348 * 127.14898 * 2 1 4 4 C 1.39771 * 126.56885 * 0.02562 * 3 2 1 5 5 H 1.08005 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.40077 * 120.00497 * 179.97438 * 4 3 2 7 7 N 1.30819 * 119.99630 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00322 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47058 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47238 * 120.00260 * 8 6 4 11 11 H 1.48504 * 109.47266 * 240.00295 * 8 6 4 12 12 N 1.33100 * 106.86774 * 180.02562 * 3 2 1 13 13 N 1.28513 * 109.74608 * 359.72500 * 12 3 2 14 14 C 1.32383 * 110.20705 * 0.45330 * 13 12 3 15 15 S 1.76194 * 126.26260 * 179.81421 * 14 13 12 16 16 C 1.80999 * 100.00064 * 359.69331 * 15 14 13 17 17 H 1.09009 * 109.46703 * 304.99946 * 16 15 14 18 18 C 1.50696 * 109.47248 * 64.99649 * 16 15 14 19 19 N 1.34778 * 120.00198 * 63.19307 * 18 16 15 20 20 O 1.21281 * 120.00251 * 242.92128 * 18 16 15 21 21 C 1.50696 * 109.47320 * 185.00158 * 16 15 14 22 22 C 1.38235 * 120.00345 * 130.55544 * 21 16 15 23 23 C 1.38233 * 120.00049 * 179.78491 * 22 21 16 24 24 C 1.38241 * 119.99946 * 0.44733 * 23 22 21 25 25 C 1.38233 * 119.99717 * 359.80596 * 24 23 22 26 26 C 1.38234 * 120.00242 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47718 * 269.98470 * 1 2 3 28 28 H 1.08995 * 109.47271 * 29.98889 * 1 2 3 29 29 H 1.09004 * 109.47347 * 149.98526 * 1 2 3 30 30 H 0.97005 * 119.99738 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00448 * 184.74339 * 19 18 16 32 32 H 0.97008 * 119.99447 * 4.75347 * 19 18 16 33 33 H 1.08000 * 119.99944 * 359.97438 * 22 21 16 34 34 H 1.07999 * 119.99987 * 180.27240 * 23 22 21 35 35 H 1.07997 * 119.99772 * 179.83317 * 24 23 22 36 36 H 1.08004 * 119.99518 * 180.02562 * 25 24 23 37 37 H 1.07996 * 119.99866 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3004 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8593 2.7005 0.0014 6 6 2.8766 3.4569 0.0010 7 7 4.1475 3.1467 0.0004 8 14 2.3528 5.2499 0.0024 9 1 0.8701 5.3325 0.0034 10 1 2.8863 5.9205 1.2152 11 1 2.8856 5.9222 -1.2098 12 7 3.5489 0.6414 -0.0006 13 7 3.5369 -0.6437 0.0049 14 6 2.2904 -1.0894 -0.0005 15 16 1.7873 -2.7780 -0.0008 16 6 3.4059 -3.5881 -0.0016 17 1 3.9943 -3.2234 -0.8436 18 6 4.1243 -3.2763 1.2859 19 7 3.6126 -3.6929 2.4611 20 8 5.1656 -2.6548 1.2642 21 6 3.2216 -5.0786 -0.1258 22 6 3.9441 -5.7885 -1.0665 23 6 3.7783 -7.1563 -1.1774 24 6 2.8830 -7.8130 -0.3538 25 6 2.1567 -7.1024 0.5833 26 6 2.3259 -5.7352 0.6973 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8900 -0.5136 29 1 -0.3634 -0.8899 -0.5141 30 1 4.8178 3.8478 0.0004 31 1 4.0372 -3.4340 3.2939 32 1 2.8198 -4.2517 2.4740 33 1 4.6405 -5.2748 -1.7128 34 1 4.3460 -7.7115 -1.9094 35 1 2.7515 -8.8813 -0.4423 36 1 1.4575 -7.6156 1.2270 37 1 1.7586 -5.1801 1.4297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649785297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:55 Heat of formation + Delta-G solvation = 33.781193 kcal Electronic energy + Delta-G solvation = -23626.843732 eV Core-core repulsion = 20109.342397 eV Total energy + Delta-G solvation = -3517.501336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46490 -41.04111 -39.62463 -35.64538 -35.23306 -35.04388 -33.50514 -31.82622 -31.34833 -29.02067 -28.13583 -27.36069 -23.60823 -23.18366 -22.78667 -22.47131 -21.62680 -19.29487 -18.79575 -18.21321 -18.13468 -17.42083 -17.03967 -16.60460 -16.34473 -16.08786 -15.97377 -15.34392 -15.20766 -15.05508 -14.50254 -14.15057 -14.02335 -13.90082 -13.82473 -13.56169 -13.11053 -12.99242 -12.79077 -12.32207 -12.12887 -11.95339 -11.90764 -11.66770 -11.52817 -11.29143 -10.71845 -10.56317 -10.34775 -10.32329 -9.86402 -9.70951 -8.66413 -8.55637 -6.61917 -0.09185 0.41968 0.57890 0.82236 1.16996 1.39617 1.58518 1.59546 1.83227 2.16597 2.41425 2.46410 2.49583 2.92366 3.33646 3.35138 3.63229 3.93981 4.05388 4.11436 4.29227 4.35439 4.43771 4.58912 4.59881 4.64984 4.88007 4.92874 4.97180 5.12184 5.30253 5.49787 5.53848 5.54431 5.59274 5.84625 6.03462 6.04669 6.20699 6.36518 6.73785 6.91682 7.29460 8.39950 8.66021 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027880 B = 0.003424 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.072142 B = 8176.150592 C = 8569.689553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.520 5.520 3 C 0.317 3.683 4 C -0.470 4.470 5 H 0.106 0.894 6 C 0.025 3.975 7 N -0.789 5.789 8 Si 1.010 2.990 9 H -0.242 1.242 10 H -0.268 1.268 11 H -0.268 1.268 12 N -0.390 5.390 13 N -0.308 5.308 14 C 0.024 3.976 15 S 0.064 5.936 16 C -0.051 4.051 17 H 0.101 0.899 18 C 0.534 3.466 19 N -0.831 5.831 20 O -0.563 6.563 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.108 4.108 26 C -0.118 4.118 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.283 0.717 31 H 0.408 0.592 32 H 0.412 0.588 33 H 0.119 0.881 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 -19.779 1.768 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.222 5.222 3 C 0.071 3.929 4 C -0.510 4.510 5 H 0.124 0.876 6 C -0.195 4.195 7 N -0.414 5.414 8 Si 0.828 3.172 9 H -0.165 1.165 10 H -0.193 1.193 11 H -0.192 1.192 12 N -0.237 5.237 13 N -0.152 5.152 14 C -0.349 4.349 15 S 0.294 5.706 16 C -0.184 4.184 17 H 0.120 0.880 18 C 0.315 3.685 19 N -0.399 5.399 20 O -0.441 6.441 21 C -0.088 4.088 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.137 4.137 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.240 0.760 32 H 0.246 0.754 33 H 0.137 0.863 34 H 0.166 0.834 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.331 -19.791 1.560 21.936 hybrid contribution 0.125 1.830 0.143 1.840 sum -9.206 -17.961 1.703 20.255 Atomic orbital electron populations 1.21882 0.75166 1.04578 1.03440 1.46360 1.08036 1.04142 1.63661 1.22118 0.85107 0.90037 0.95617 1.18675 0.96029 0.86370 1.49945 0.87625 1.27075 0.93866 1.06756 0.91804 1.70206 1.02539 1.36958 1.31732 0.84768 0.80247 0.73536 0.78632 1.16457 1.19333 1.19245 1.75377 1.17479 0.99371 1.31500 1.74660 1.16772 1.06907 1.16881 1.26663 0.91440 0.96035 1.20718 1.84021 1.05751 0.86025 1.94838 1.22311 0.98709 0.97709 0.99643 0.88040 1.20099 0.84388 0.77685 0.86331 1.43554 1.33901 1.55260 1.07166 1.90785 1.25192 1.40514 1.87566 1.18991 1.00705 0.89054 1.00093 1.21212 0.99096 0.95723 0.97523 1.21450 0.98876 0.93021 1.00048 1.21665 0.94919 1.01632 0.94517 1.21503 0.99612 0.92742 0.98724 1.21209 0.97387 0.96054 0.99059 0.90602 0.89305 0.88932 0.90631 0.76048 0.75413 0.86311 0.83427 0.82564 0.82233 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.17 10.88 127.77 1.39 4.56 16 2 N -0.52 -25.60 3.26 -543.64 -1.77 -27.37 16 3 C 0.32 18.78 7.53 133.23 1.00 19.78 16 4 C -0.47 -25.81 9.04 23.09 0.21 -25.60 16 5 H 0.11 5.08 7.30 -2.91 -0.02 5.06 16 6 C 0.03 1.36 5.50 85.29 0.47 1.83 16 7 N -0.79 -46.90 11.94 21.85 0.26 -46.64 16 8 Si 1.01 38.89 29.56 68.60 2.03 40.91 16 9 H -0.24 -8.42 7.11 99.48 0.71 -7.72 16 10 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 11 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 12 N -0.39 -25.82 10.48 -55.02 -0.58 -26.39 16 13 N -0.31 -18.61 10.31 -56.18 -0.58 -19.18 16 14 C 0.02 1.21 7.85 179.18 1.41 2.62 16 15 S 0.06 2.19 20.21 -56.49 -1.14 1.05 16 16 C -0.05 -1.77 2.36 29.10 0.07 -1.70 16 17 H 0.10 4.18 7.89 -2.39 -0.02 4.17 16 18 C 0.53 20.72 5.85 87.66 0.51 21.23 16 19 N -0.83 -23.10 8.66 -173.53 -1.50 -24.60 16 20 O -0.56 -28.75 17.26 -3.03 -0.05 -28.80 16 21 C -0.09 -2.18 4.78 -19.87 -0.09 -2.28 16 22 C -0.12 -2.66 9.67 22.27 0.22 -2.45 16 23 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.11 -1.37 10.05 22.27 0.22 -1.14 16 25 C -0.11 -1.41 10.05 22.27 0.22 -1.18 16 26 C -0.12 -2.17 7.99 22.27 0.18 -1.99 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.89 7.53 -2.39 -0.02 2.87 16 29 H 0.09 2.65 7.85 -2.38 -0.02 2.63 16 30 H 0.28 15.23 8.30 -92.70 -0.77 14.46 16 31 H 0.41 10.48 8.93 -92.71 -0.83 9.66 16 32 H 0.41 8.33 5.85 -92.70 -0.54 7.79 16 33 H 0.12 2.84 7.97 -2.91 -0.02 2.82 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.14 2.13 5.93 -2.91 -0.02 2.12 16 Total: -1.00 -90.41 334.43 2.47 -87.94 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.23 Total: 31.08 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.03 Total: 12.01 kcal Atomic # 7 Polarization: -140.02 SS G_CDS: -4.17 Total: -144.19 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.14 Total: 1.05 kcal Total: -90.41 2.47 -87.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649785297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.723 kcal (2) G-P(sol) polarization free energy of solvation -90.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds