Wall clock time and date at job start Tue Mar 31 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99766 * 2 1 4 4 H 1.07999 * 119.99908 * 198.06887 * 3 2 1 5 5 C 1.38812 * 120.00108 * 18.07621 * 3 2 1 6 6 N 1.31612 * 120.00297 * 16.58808 * 5 3 2 7 7 Si 1.86803 * 119.99612 * 196.59303 * 5 3 2 8 8 H 1.48494 * 109.47297 * 94.97763 * 7 5 3 9 9 H 1.48501 * 109.46812 * 214.97371 * 7 5 3 10 10 H 1.48498 * 109.47459 * 334.97505 * 7 5 3 11 11 C 1.46501 * 120.00027 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46983 * 270.00126 * 11 2 1 13 13 O 1.21293 * 120.00012 * 359.97438 * 12 11 2 14 14 N 1.34775 * 120.00236 * 180.02562 * 12 11 2 15 15 C 1.40105 * 119.99975 * 185.34166 * 14 12 11 16 16 C 1.38858 * 120.01215 * 211.86244 * 15 14 12 17 17 C 1.38094 * 119.97949 * 180.25409 * 16 15 14 18 18 C 1.38710 * 120.01642 * 359.45121 * 17 16 15 19 19 O 1.35971 * 119.98670 * 180.29412 * 18 17 16 20 20 C 1.42897 * 117.00396 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46995 * 60.00525 * 20 19 18 22 22 F 1.39899 * 109.47158 * 180.02562 * 20 19 18 23 23 F 1.39900 * 109.47235 * 300.00146 * 20 19 18 24 24 C 1.38719 * 120.03177 * 0.27833 * 18 17 16 25 25 C 1.38082 * 120.01799 * 359.97438 * 24 18 17 26 26 H 1.08994 * 109.46964 * 275.13952 * 1 2 3 27 27 H 1.09002 * 109.46908 * 35.14010 * 1 2 3 28 28 H 1.08997 * 109.46819 * 155.13695 * 1 2 3 29 29 H 0.96996 * 120.00467 * 180.02562 * 6 5 3 30 30 H 1.08998 * 109.46826 * 150.00113 * 11 2 1 31 31 H 1.08997 * 109.47055 * 29.99582 * 11 2 1 32 32 H 0.97001 * 119.99531 * 5.34289 * 14 12 11 33 33 H 1.07992 * 120.00913 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.98731 * 179.72912 * 17 16 15 35 35 H 1.08005 * 119.99581 * 180.02562 * 24 18 17 36 36 H 1.08001 * 120.01298 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1897 1.2090 -0.2901 5 6 1.5070 2.3584 0.3730 6 7 0.3671 2.3042 1.0286 7 14 2.2600 4.0133 -0.0558 8 1 1.6707 4.5115 -1.3245 9 1 1.9794 4.9820 1.0342 10 1 3.7283 3.8620 -0.2178 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 8 2.0549 -1.0220 2.3423 14 7 3.1116 -2.8517 1.6659 15 6 3.2478 -3.3141 2.9815 16 6 4.3798 -4.0270 3.3535 17 6 4.5108 -4.4869 4.6489 18 6 3.5173 -4.2270 5.5814 19 8 3.6498 -4.6750 6.8583 20 6 2.5883 -4.3718 7.7657 21 9 1.3965 -4.9314 7.2928 22 9 2.8857 -4.9027 9.0254 23 9 2.4438 -2.9840 7.8673 24 6 2.3888 -3.5100 5.2119 25 6 2.2539 -3.0540 3.9155 26 1 -0.3633 0.0921 1.0235 27 1 -0.3633 0.8404 -0.5915 28 1 -0.3633 -0.9324 -0.4321 29 1 -0.0822 3.1234 1.2890 30 1 3.1499 -1.1381 -0.5143 31 1 1.6084 -2.0281 -0.5147 32 1 3.4945 -3.3574 0.9320 33 1 5.1557 -4.2250 2.6289 34 1 5.3892 -5.0453 4.9373 35 1 1.6158 -3.3076 5.9385 36 1 1.3754 -2.4954 3.6280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027537800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:40 Heat of formation + Delta-G solvation = -163.386038 kcal Electronic energy + Delta-G solvation = -26402.877071 eV Core-core repulsion = 21859.923560 eV Total energy + Delta-G solvation = -4542.953511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.57456 -48.31840 -48.15101 -40.50689 -39.34859 -37.39891 -35.20995 -33.99016 -31.38435 -31.13087 -29.39545 -27.13833 -25.94731 -25.72217 -23.35254 -22.75403 -21.47301 -19.87956 -19.80199 -19.27509 -19.16665 -17.59929 -16.80227 -16.67718 -16.37461 -15.36273 -15.19489 -15.04414 -14.89547 -14.66024 -14.62295 -14.55853 -14.48949 -14.26279 -14.04610 -13.64595 -13.43933 -13.36674 -13.26018 -12.85119 -12.59745 -12.27449 -11.81214 -11.29038 -11.20917 -10.89063 -10.72478 -10.44730 -10.04552 -9.93982 -9.90185 -9.29765 -9.03592 -8.53079 -7.78492 -6.89649 -5.75122 -3.18238 1.14159 1.27153 1.37518 2.72687 3.21216 3.34166 3.43210 3.45866 3.47577 3.64673 3.71559 3.91052 4.47849 4.64989 4.68663 4.98775 5.21100 5.26579 5.42676 5.47765 5.60792 5.74765 5.92237 6.01278 6.15768 6.18276 6.32642 6.37715 6.62088 6.65432 7.10292 7.33384 7.66932 7.80017 7.82547 8.30331 8.83410 9.16080 9.78555 10.23501 11.29681 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002992 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.331092 B = 9356.804760 C = 9941.440037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.570 5.570 3 C -0.263 4.263 4 H 0.072 0.928 5 C 0.009 3.991 6 N -0.894 5.894 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.134 3.866 12 C 0.464 3.536 13 O -0.486 6.486 14 N -0.690 5.690 15 C 0.153 3.847 16 C -0.126 4.126 17 C -0.101 4.101 18 C 0.067 3.933 19 O -0.313 6.313 20 C 0.603 3.397 21 F -0.166 7.166 22 F -0.136 7.136 23 F -0.164 7.164 24 C -0.164 4.164 25 C -0.087 4.087 26 H 0.034 0.966 27 H 0.050 0.950 28 H -0.001 1.001 29 H 0.253 0.747 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -17.759 7.059 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.289 5.289 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.191 4.191 6 N -0.537 5.537 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.000 4.000 12 C 0.249 3.751 13 O -0.355 6.355 14 N -0.339 5.339 15 C 0.057 3.943 16 C -0.147 4.147 17 C -0.121 4.121 18 C 0.024 3.976 19 O -0.233 6.233 20 C 0.512 3.488 21 F -0.148 7.148 22 F -0.118 7.118 23 F -0.146 7.146 24 C -0.183 4.183 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.240 0.760 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.641 -17.054 7.787 19.578 hybrid contribution 0.344 0.752 0.088 0.832 sum 5.985 -16.301 7.876 19.068 Atomic orbital electron populations 1.20905 0.81710 0.95713 1.00049 1.44001 1.02248 0.99781 1.82884 1.19200 0.96197 0.84059 1.39792 0.90974 1.24991 0.97734 0.98445 0.97950 1.70136 1.17992 1.26581 1.39001 0.86210 0.78671 0.83866 0.77596 1.21387 1.21727 1.20404 1.21077 0.98365 0.90525 0.89984 1.24352 0.76175 0.78296 0.96238 1.90718 1.47118 1.51539 1.46115 1.44567 1.57985 1.25796 1.05505 1.18029 0.93361 0.96097 0.86845 1.20734 0.96566 1.01710 0.95660 1.20083 0.98124 1.02773 0.91080 1.18581 0.97554 1.00569 0.80858 1.86366 1.41668 1.74902 1.20365 1.19360 0.76627 0.74785 0.78029 1.93299 1.47926 1.85369 1.88254 1.93287 1.93388 1.86618 1.38473 1.93325 1.95253 1.30076 1.95931 1.21397 0.97430 1.00901 0.98597 1.21102 0.99324 0.98614 0.91662 0.94745 0.93080 0.98261 0.93670 0.90455 0.90876 0.76003 0.84461 0.84489 0.84994 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 9.02 59.85 0.54 4.48 16 2 N -0.57 -14.09 2.42 -182.50 -0.44 -14.53 16 3 C -0.26 -7.21 9.69 -15.06 -0.15 -7.36 16 4 H 0.07 1.91 7.86 -52.49 -0.41 1.50 16 5 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 6 N -0.89 -26.57 10.63 55.49 0.59 -25.98 16 7 Si 0.91 22.00 29.59 -169.99 -5.03 16.97 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 C 0.13 2.50 6.19 -5.19 -0.03 2.46 16 12 C 0.46 8.90 7.65 -10.99 -0.08 8.82 16 13 O -0.49 -11.96 14.00 5.55 0.08 -11.89 16 14 N -0.69 -9.72 5.35 -9.83 -0.05 -9.77 16 15 C 0.15 2.22 6.32 -83.62 -0.53 1.69 16 16 C -0.13 -1.44 9.95 -39.40 -0.39 -1.83 16 17 C -0.10 -1.15 9.98 -39.46 -0.39 -1.55 16 18 C 0.07 0.88 6.48 -39.23 -0.25 0.62 16 19 O -0.31 -3.84 10.37 -19.65 -0.20 -4.05 16 20 C 0.60 6.91 3.42 101.05 0.35 7.26 16 21 F -0.17 -1.91 15.56 2.25 0.04 -1.87 16 22 F -0.14 -1.42 17.53 2.25 0.04 -1.38 16 23 F -0.16 -2.05 15.56 2.25 0.04 -2.01 16 24 C -0.16 -2.39 8.25 -39.46 -0.33 -2.71 16 25 C -0.09 -1.41 8.66 -39.41 -0.34 -1.75 16 26 H 0.03 0.95 7.45 -51.93 -0.39 0.56 16 27 H 0.05 1.33 7.10 -51.93 -0.37 0.96 16 28 H 0.00 -0.02 7.83 -51.93 -0.41 -0.43 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 31 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 32 H 0.40 3.96 8.81 -40.82 -0.36 3.60 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.13 1.83 5.09 -52.48 -0.27 1.57 16 36 H 0.15 2.76 6.28 -52.49 -0.33 2.43 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -33.45 323.74 -5.11 -38.55 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.34 Total: 0.78 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.70 Total: 10.29 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.10 Total: -50.27 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.13 Total: -15.93 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.45 -5.11 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027537800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.832 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds