Wall clock time and date at job start Tue Mar 31 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99766 * 2 1 4 4 H 1.07999 * 119.99908 * 198.06887 * 3 2 1 5 5 C 1.38812 * 120.00108 * 18.07621 * 3 2 1 6 6 N 1.31612 * 120.00297 * 16.58808 * 5 3 2 7 7 Si 1.86803 * 119.99612 * 196.59303 * 5 3 2 8 8 H 1.48494 * 109.47297 * 94.97763 * 7 5 3 9 9 H 1.48501 * 109.46812 * 214.97371 * 7 5 3 10 10 H 1.48498 * 109.47459 * 334.97505 * 7 5 3 11 11 C 1.46501 * 120.00027 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46983 * 270.00126 * 11 2 1 13 13 O 1.21293 * 120.00012 * 359.97438 * 12 11 2 14 14 N 1.34775 * 120.00236 * 180.02562 * 12 11 2 15 15 C 1.40105 * 119.99975 * 185.34166 * 14 12 11 16 16 C 1.38858 * 120.01215 * 211.86244 * 15 14 12 17 17 C 1.38094 * 119.97949 * 180.25409 * 16 15 14 18 18 C 1.38710 * 120.01642 * 359.45121 * 17 16 15 19 19 O 1.35971 * 119.98670 * 180.29412 * 18 17 16 20 20 C 1.42897 * 117.00396 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46995 * 60.00525 * 20 19 18 22 22 F 1.39899 * 109.47158 * 180.02562 * 20 19 18 23 23 F 1.39900 * 109.47235 * 300.00146 * 20 19 18 24 24 C 1.38719 * 120.03177 * 0.27833 * 18 17 16 25 25 C 1.38082 * 120.01799 * 359.97438 * 24 18 17 26 26 H 1.08994 * 109.46964 * 275.13952 * 1 2 3 27 27 H 1.09002 * 109.46908 * 35.14010 * 1 2 3 28 28 H 1.08997 * 109.46819 * 155.13695 * 1 2 3 29 29 H 0.96996 * 120.00467 * 180.02562 * 6 5 3 30 30 H 1.08998 * 109.46826 * 150.00113 * 11 2 1 31 31 H 1.08997 * 109.47055 * 29.99582 * 11 2 1 32 32 H 0.97001 * 119.99531 * 5.34289 * 14 12 11 33 33 H 1.07992 * 120.00913 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.98731 * 179.72912 * 17 16 15 35 35 H 1.08005 * 119.99581 * 180.02562 * 24 18 17 36 36 H 1.08001 * 120.01298 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1897 1.2090 -0.2901 5 6 1.5070 2.3584 0.3730 6 7 0.3671 2.3042 1.0286 7 14 2.2600 4.0133 -0.0558 8 1 1.6707 4.5115 -1.3245 9 1 1.9794 4.9820 1.0342 10 1 3.7283 3.8620 -0.2178 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 8 2.0549 -1.0220 2.3423 14 7 3.1116 -2.8517 1.6659 15 6 3.2478 -3.3141 2.9815 16 6 4.3798 -4.0270 3.3535 17 6 4.5108 -4.4869 4.6489 18 6 3.5173 -4.2270 5.5814 19 8 3.6498 -4.6750 6.8583 20 6 2.5883 -4.3718 7.7657 21 9 1.3965 -4.9314 7.2928 22 9 2.8857 -4.9027 9.0254 23 9 2.4438 -2.9840 7.8673 24 6 2.3888 -3.5100 5.2119 25 6 2.2539 -3.0540 3.9155 26 1 -0.3633 0.0921 1.0235 27 1 -0.3633 0.8404 -0.5915 28 1 -0.3633 -0.9324 -0.4321 29 1 -0.0822 3.1234 1.2890 30 1 3.1499 -1.1381 -0.5143 31 1 1.6084 -2.0281 -0.5147 32 1 3.4945 -3.3574 0.9320 33 1 5.1557 -4.2250 2.6289 34 1 5.3892 -5.0453 4.9373 35 1 1.6158 -3.3076 5.9385 36 1 1.3754 -2.4954 3.6280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027537800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:39 Heat of formation + Delta-G solvation = -186.245796 kcal Electronic energy + Delta-G solvation = -26403.868344 eV Core-core repulsion = 21859.923560 eV Total energy + Delta-G solvation = -4543.944784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.51450 -49.22828 -49.11725 -41.64398 -40.61387 -38.62381 -37.02362 -35.34187 -33.32175 -32.19126 -30.66779 -28.64813 -27.87170 -26.87000 -24.57202 -24.00283 -23.02851 -21.28792 -20.79740 -20.22351 -20.16769 -18.94877 -18.55904 -17.95832 -17.58395 -16.80726 -16.43210 -16.25748 -16.06231 -15.81605 -15.74872 -15.57180 -15.50817 -15.38641 -15.22616 -15.18227 -14.90753 -14.76329 -14.38016 -14.23282 -13.85783 -13.64064 -13.42253 -13.07626 -12.81474 -12.52754 -12.28012 -12.23712 -12.01552 -11.87569 -11.21314 -10.87351 -10.53275 -10.12840 -8.93422 -8.87863 -7.82891 -5.28109 0.06466 0.21971 0.41588 1.46169 1.47085 1.56466 1.77457 1.82473 2.19286 2.51936 2.62581 2.71541 2.92922 3.33351 3.59909 3.65356 3.68096 4.03787 4.09633 4.26833 4.43665 4.61515 4.68914 4.73199 4.80337 4.89078 5.09634 5.23310 5.30847 5.31792 5.53007 5.60597 5.74404 5.95971 6.25711 6.65556 7.11350 7.45004 7.83952 8.23214 9.21115 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002992 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.331092 B = 9356.804760 C = 9941.440037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.592 5.592 3 C -0.263 4.263 4 H 0.081 0.919 5 C -0.056 4.056 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.281 1.281 9 H -0.303 1.303 10 H -0.264 1.264 11 C 0.129 3.871 12 C 0.469 3.531 13 O -0.550 6.550 14 N -0.665 5.665 15 C 0.132 3.868 16 C -0.103 4.103 17 C -0.092 4.092 18 C 0.064 3.936 19 O -0.309 6.309 20 C 0.606 3.394 21 F -0.167 7.167 22 F -0.128 7.128 23 F -0.172 7.172 24 C -0.177 4.177 25 C -0.112 4.112 26 H -0.010 1.010 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.244 0.756 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.429 0.571 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.127 0.873 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.081 -20.151 6.081 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.311 5.311 3 C -0.393 4.393 4 H 0.099 0.901 5 C -0.251 4.251 6 N -0.581 5.581 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.231 1.231 10 H -0.189 1.189 11 C -0.002 4.002 12 C 0.255 3.745 13 O -0.425 6.425 14 N -0.315 5.315 15 C 0.036 3.964 16 C -0.123 4.123 17 C -0.111 4.111 18 C 0.022 3.978 19 O -0.229 6.229 20 C 0.515 3.485 21 F -0.149 7.149 22 F -0.109 7.109 23 F -0.154 7.154 24 C -0.196 4.196 25 C -0.133 4.133 26 H 0.009 0.991 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.269 0.731 33 H 0.199 0.801 34 H 0.193 0.807 35 H 0.145 0.855 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.749 -19.547 6.777 22.462 hybrid contribution -0.518 1.260 0.455 1.436 sum 8.231 -18.287 7.233 21.318 Atomic orbital electron populations 1.20592 0.82424 0.96628 0.97254 1.44136 1.02315 1.01262 1.83425 1.19616 0.96459 0.85365 1.37880 0.90096 1.25808 0.98562 1.01951 0.98802 1.70341 1.19826 1.26578 1.41340 0.85213 0.78558 0.79595 0.76848 1.20755 1.23056 1.18887 1.21355 0.99827 0.89118 0.89884 1.23959 0.75886 0.79058 0.95565 1.90729 1.50023 1.54028 1.47722 1.43946 1.56618 1.24370 1.06569 1.18166 0.94365 0.97557 0.86323 1.21141 0.95717 0.98948 0.96464 1.20584 0.98388 1.01708 0.90383 1.18808 0.97423 1.00067 0.81531 1.86368 1.41790 1.74701 1.20051 1.19314 0.76548 0.74459 0.78195 1.93300 1.47983 1.85302 1.88312 1.93307 1.93305 1.86422 1.37849 1.93313 1.95293 1.30814 1.95972 1.21354 0.98432 1.01860 0.97989 1.20906 0.99362 0.99859 0.93187 0.99110 0.95635 0.94130 0.94641 0.87617 0.86841 0.73084 0.80137 0.80741 0.85512 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 9.02 127.77 1.15 9.99 16 2 N -0.59 -29.10 2.42 -731.32 -1.77 -30.87 16 3 C -0.26 -14.44 9.69 84.03 0.81 -13.62 16 4 H 0.08 4.19 7.86 -2.91 -0.02 4.16 16 5 C -0.06 -3.24 5.04 84.86 0.43 -2.81 16 6 N -0.93 -58.19 10.63 21.65 0.23 -57.96 16 7 Si 0.97 46.10 29.59 68.60 2.03 48.13 16 8 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 9 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 11 C 0.13 4.52 6.19 85.63 0.53 5.05 16 12 C 0.47 17.56 7.65 87.66 0.67 18.23 16 13 O -0.55 -28.05 14.00 -3.07 -0.04 -28.09 16 14 N -0.67 -17.10 5.35 -303.39 -1.62 -18.72 16 15 C 0.13 3.57 6.32 38.11 0.24 3.81 16 16 C -0.10 -1.90 9.95 22.38 0.22 -1.68 16 17 C -0.09 -1.71 9.98 22.35 0.22 -1.48 16 18 C 0.06 1.57 6.48 22.50 0.15 1.71 16 19 O -0.31 -6.99 10.37 -93.22 -0.97 -7.96 16 20 C 0.61 13.40 3.42 113.37 0.39 13.79 16 21 F -0.17 -3.78 15.56 44.97 0.70 -3.08 16 22 F -0.13 -2.50 17.53 44.97 0.79 -1.71 16 23 F -0.17 -4.31 15.56 44.97 0.70 -3.61 16 24 C -0.18 -5.20 8.25 22.35 0.18 -5.02 16 25 C -0.11 -3.75 8.66 22.38 0.19 -3.55 16 26 H -0.01 -0.56 7.45 -2.39 -0.02 -0.58 16 27 H 0.02 1.36 7.10 -2.39 -0.02 1.34 16 28 H 0.04 1.64 7.83 -2.39 -0.02 1.62 16 29 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.11 3.12 8.03 -2.39 -0.02 3.10 16 31 H 0.11 3.05 7.86 -2.39 -0.02 3.03 16 32 H 0.43 6.58 8.81 -92.71 -0.82 5.77 16 33 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.13 3.71 5.09 -2.91 -0.01 3.69 16 36 H 0.11 4.49 6.28 -2.91 -0.02 4.47 16 Total: -1.00 -78.02 323.74 5.58 -72.44 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.34 Total: 7.01 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 5.19 Total: 24.42 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.16 Total: -107.55 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.01 Total: -36.05 kcal Atomic # 9 Polarization: -10.58 SS G_CDS: 2.19 Total: -8.40 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.02 5.58 -72.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027537800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.807 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds