Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99715 * 2 1 4 4 C 1.50703 * 109.46952 * 269.99200 * 3 2 1 5 5 H 1.08001 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99920 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99868 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99694 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46896 * 90.00724 * 8 6 4 10 10 H 1.48499 * 109.47002 * 210.00006 * 8 6 4 11 11 H 1.48496 * 109.47481 * 330.00312 * 8 6 4 12 12 C 1.34776 * 120.00191 * 179.97438 * 2 1 3 13 13 O 1.21593 * 119.99994 * 180.02562 * 12 2 1 14 14 N 1.34776 * 119.99961 * 0.02562 * 12 2 1 15 15 C 1.40169 * 119.99970 * 184.44189 * 14 12 2 16 16 C 1.38714 * 120.08692 * 325.31822 * 15 14 12 17 17 C 1.38201 * 119.98392 * 179.97438 * 16 15 14 18 18 C 1.38272 * 120.16118 * 0.02562 * 17 16 15 19 19 C 1.38246 * 120.17815 * 359.97438 * 18 17 16 20 20 C 1.38546 * 120.01497 * 359.96215 * 19 18 17 21 21 O 1.35980 * 120.08392 * 180.02562 * 20 19 18 22 22 C 1.42910 * 116.99808 * 359.97438 * 21 20 19 23 23 F 1.39901 * 109.46869 * 60.00483 * 22 21 20 24 24 F 1.39905 * 109.46909 * 180.02562 * 22 21 20 25 25 F 1.39893 * 109.47188 * 300.00402 * 22 21 20 26 26 H 1.09002 * 109.46909 * 270.00066 * 1 2 3 27 27 H 1.09004 * 109.47003 * 30.00401 * 1 2 3 28 28 H 1.08996 * 109.47021 * 150.00390 * 1 2 3 29 29 H 1.09002 * 109.47229 * 29.99720 * 3 2 1 30 30 H 1.09003 * 109.47158 * 149.99762 * 3 2 1 31 31 H 0.97002 * 119.99981 * 179.97438 * 7 6 4 32 32 H 0.97005 * 120.00125 * 4.43749 * 14 12 2 33 33 H 1.07999 * 120.00267 * 0.25880 * 16 15 14 34 34 H 1.07999 * 119.92142 * 179.97438 * 17 16 15 35 35 H 1.08005 * 119.90898 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.99493 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.3065 4.2600 -3.9004 10 1 4.6969 4.2007 -3.4967 11 1 3.5543 2.2204 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1628 -3.5464 0.0951 16 6 3.4084 -3.6800 -0.5005 17 6 4.0947 -4.8759 -0.4054 18 6 3.5425 -5.9410 0.2819 19 6 2.3015 -5.8152 0.8779 20 6 1.6077 -4.6194 0.7884 21 8 0.3872 -4.4939 1.3746 22 6 -0.1206 -5.6364 2.0669 23 9 0.7579 -5.9849 3.0985 24 9 -1.3765 -5.3355 2.6049 25 9 -0.2403 -6.7072 1.1747 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 4.0300 4.4441 -0.8505 32 1 0.4972 -2.3357 -0.0649 33 1 3.8438 -2.8483 -1.0343 34 1 5.0642 -4.9789 -0.8699 35 1 4.0822 -6.8739 0.3532 36 1 1.8728 -6.6493 1.4137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033621261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = -179.766642 kcal Electronic energy + Delta-G solvation = -26904.350240 eV Core-core repulsion = 22360.686413 eV Total energy + Delta-G solvation = -4543.663827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.65288 -48.37717 -48.24268 -40.79472 -39.36033 -37.61279 -35.09119 -34.43877 -32.58262 -30.45311 -29.58800 -27.67404 -26.19717 -25.82404 -23.59998 -22.85662 -22.09214 -19.90471 -19.60116 -19.36329 -19.17757 -17.89603 -16.98268 -16.65684 -16.41044 -15.62295 -15.38827 -15.14156 -15.02543 -14.79933 -14.69000 -14.64723 -14.57122 -14.49146 -14.33465 -13.97462 -13.59939 -13.32392 -13.15466 -12.80027 -12.22435 -12.18839 -11.94651 -11.82291 -11.54261 -11.21656 -10.93684 -10.59862 -10.26506 -10.15545 -9.68092 -9.34110 -8.77632 -8.45664 -8.08001 -7.64429 -6.06297 -4.11312 1.14341 1.23125 1.31102 2.61809 3.05756 3.28971 3.35869 3.40258 3.48812 3.57658 3.75762 3.93389 4.34138 4.47717 4.60519 4.66356 5.02978 5.25442 5.27741 5.37631 5.47566 5.65542 5.82383 5.89901 6.09289 6.12836 6.36556 6.47361 6.59151 6.72498 7.06755 7.30351 7.44868 7.60170 7.90899 8.19907 8.49561 8.88845 9.14957 9.54030 11.01611 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.003348 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.411049 B = 8360.080842 C = 9172.877538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.609 5.609 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.699 3.301 13 O -0.568 6.568 14 N -0.692 5.692 15 C 0.185 3.815 16 C -0.090 4.090 17 C -0.113 4.113 18 C -0.108 4.108 19 C -0.172 4.172 20 C 0.060 3.940 21 O -0.310 6.310 22 C 0.604 3.396 23 F -0.165 7.165 24 F -0.134 7.134 25 F -0.167 7.167 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 -20.502 4.207 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.401 3.599 13 O -0.444 6.444 14 N -0.342 5.342 15 C 0.087 3.913 16 C -0.110 4.110 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.191 4.191 20 C 0.016 3.984 21 O -0.230 6.230 22 C 0.514 3.486 23 F -0.148 7.148 24 F -0.115 7.115 25 F -0.149 7.149 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.178 0.822 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.866 -20.022 4.290 21.597 hybrid contribution -0.603 0.094 -0.745 0.963 sum -7.468 -19.928 3.545 21.575 Atomic orbital electron populations 1.21614 0.81504 1.02403 1.00601 1.47506 1.05843 1.06233 1.74837 1.19286 0.92415 0.76725 0.97579 1.21445 1.36650 1.06310 0.92299 0.92435 1.24926 0.95311 0.96352 0.97447 1.69929 1.38323 1.14321 1.30743 0.86488 0.77684 0.78580 0.84604 1.20664 1.21070 1.19909 1.15884 0.85530 0.79960 0.78515 1.90878 1.11224 1.85436 1.56905 1.42904 1.10295 1.03247 1.77749 1.16838 0.93819 0.83634 0.96996 1.21492 0.92853 0.98744 0.97919 1.21168 1.00299 0.92356 0.99370 1.20868 0.94475 0.99343 0.98011 1.21229 0.97618 0.95621 1.04681 1.18447 0.84270 0.96536 0.99175 1.86372 1.34899 1.34681 1.67088 1.19338 0.76143 0.76834 0.76318 1.93299 1.69340 1.91893 1.60220 1.93303 1.39504 1.93284 1.85425 1.93290 1.95780 1.57285 1.68575 0.93474 0.90124 0.93169 0.94667 0.93568 0.92667 0.75720 0.82191 0.84967 0.85232 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.61 -12.87 2.86 -188.73 -0.54 -13.41 16 3 C 0.26 6.69 5.16 -5.19 -0.03 6.66 16 4 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.70 14.76 8.13 -86.92 -0.71 14.05 16 13 O -0.57 -14.01 13.34 5.28 0.07 -13.94 16 14 N -0.69 -11.51 5.07 -14.10 -0.07 -11.59 16 15 C 0.18 2.90 6.32 -83.48 -0.53 2.37 16 16 C -0.09 -1.39 8.71 -39.42 -0.34 -1.74 16 17 C -0.11 -1.38 10.04 -39.58 -0.40 -1.77 16 18 C -0.11 -1.16 10.04 -39.57 -0.40 -1.55 16 19 C -0.17 -2.01 8.26 -39.46 -0.33 -2.33 16 20 C 0.06 0.82 6.50 -39.08 -0.25 0.57 16 21 O -0.31 -3.90 9.93 -19.68 -0.20 -4.10 16 22 C 0.60 6.34 3.42 101.05 0.35 6.69 16 23 F -0.17 -1.74 15.56 2.25 0.04 -1.71 16 24 F -0.13 -1.34 17.53 2.25 0.04 -1.30 16 25 F -0.17 -1.64 15.57 2.25 0.04 -1.61 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 28 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 29 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 30 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.41 5.68 6.26 -40.82 -0.26 5.43 16 33 H 0.16 2.89 6.18 -52.49 -0.32 2.56 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.13 1.31 5.10 -52.48 -0.27 1.04 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -31.82 323.46 -5.69 -37.51 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.21 Total: 2.78 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -2.44 Total: 11.44 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.13 Total: -50.52 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.12 Total: -18.03 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.11 Total: -4.61 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.82 -5.69 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033621261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.257 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds