Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99715 * 2 1 4 4 C 1.50703 * 109.46952 * 269.99200 * 3 2 1 5 5 H 1.08001 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99920 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99868 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99694 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46896 * 90.00724 * 8 6 4 10 10 H 1.48499 * 109.47002 * 210.00006 * 8 6 4 11 11 H 1.48496 * 109.47481 * 330.00312 * 8 6 4 12 12 C 1.34776 * 120.00191 * 179.97438 * 2 1 3 13 13 O 1.21593 * 119.99994 * 180.02562 * 12 2 1 14 14 N 1.34776 * 119.99961 * 0.02562 * 12 2 1 15 15 C 1.40169 * 119.99970 * 184.44189 * 14 12 2 16 16 C 1.38714 * 120.08692 * 325.31822 * 15 14 12 17 17 C 1.38201 * 119.98392 * 179.97438 * 16 15 14 18 18 C 1.38272 * 120.16118 * 0.02562 * 17 16 15 19 19 C 1.38246 * 120.17815 * 359.97438 * 18 17 16 20 20 C 1.38546 * 120.01497 * 359.96215 * 19 18 17 21 21 O 1.35980 * 120.08392 * 180.02562 * 20 19 18 22 22 C 1.42910 * 116.99808 * 359.97438 * 21 20 19 23 23 F 1.39901 * 109.46869 * 60.00483 * 22 21 20 24 24 F 1.39905 * 109.46909 * 180.02562 * 22 21 20 25 25 F 1.39893 * 109.47188 * 300.00402 * 22 21 20 26 26 H 1.09002 * 109.46909 * 270.00066 * 1 2 3 27 27 H 1.09004 * 109.47003 * 30.00401 * 1 2 3 28 28 H 1.08996 * 109.47021 * 150.00390 * 1 2 3 29 29 H 1.09002 * 109.47229 * 29.99720 * 3 2 1 30 30 H 1.09003 * 109.47158 * 149.99762 * 3 2 1 31 31 H 0.97002 * 119.99981 * 179.97438 * 7 6 4 32 32 H 0.97005 * 120.00125 * 4.43749 * 14 12 2 33 33 H 1.07999 * 120.00267 * 0.25880 * 16 15 14 34 34 H 1.07999 * 119.92142 * 179.97438 * 17 16 15 35 35 H 1.08005 * 119.90898 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.99493 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0976 1.0960 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.3065 4.2600 -3.9004 10 1 4.6969 4.2007 -3.4967 11 1 3.5543 2.2204 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1628 -3.5464 0.0951 16 6 3.4084 -3.6800 -0.5005 17 6 4.0947 -4.8759 -0.4054 18 6 3.5425 -5.9410 0.2819 19 6 2.3015 -5.8152 0.8779 20 6 1.6077 -4.6194 0.7884 21 8 0.3872 -4.4939 1.3746 22 6 -0.1206 -5.6364 2.0669 23 9 0.7579 -5.9849 3.0985 24 9 -1.3765 -5.3355 2.6049 25 9 -0.2403 -6.7072 1.1747 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 4.0300 4.4441 -0.8505 32 1 0.4972 -2.3357 -0.0649 33 1 3.8438 -2.8483 -1.0343 34 1 5.0642 -4.9789 -0.8699 35 1 4.0822 -6.8739 0.3532 36 1 1.8728 -6.6493 1.4137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033621261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = -200.103946 kcal Electronic energy + Delta-G solvation = -26905.232132 eV Core-core repulsion = 22360.686413 eV Total energy + Delta-G solvation = -4544.545719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.47278 -49.18846 -49.05781 -42.00982 -40.70721 -38.67402 -36.74758 -35.90951 -34.63032 -31.47329 -30.88287 -29.43599 -27.40929 -27.04981 -25.30191 -23.95778 -23.38852 -21.13283 -20.79533 -20.20126 -20.14637 -19.21394 -18.67485 -18.32627 -17.52112 -16.95895 -16.66614 -16.26814 -16.20442 -16.10855 -15.77280 -15.56089 -15.49427 -15.46374 -15.35044 -15.18358 -14.84335 -14.60896 -14.52051 -14.16894 -13.91902 -13.50803 -13.27750 -13.16996 -12.87490 -12.75713 -12.59578 -12.48132 -12.18280 -11.74603 -11.51386 -10.98816 -10.62661 -9.83986 -9.57996 -9.05167 -8.20762 -6.35719 0.12450 0.19287 0.40789 1.38284 1.41001 1.50863 1.61957 1.76283 2.10082 2.39834 2.64305 2.73445 2.96963 2.97477 3.09248 3.65388 3.70018 4.08927 4.24049 4.31426 4.34948 4.55700 4.60612 4.78645 4.92315 4.96034 5.17061 5.19694 5.33999 5.42045 5.49156 5.55320 5.75308 5.95128 5.99310 6.06087 6.72519 6.96081 7.30824 7.55681 8.85933 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.003348 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.411049 B = 8360.080842 C = 9172.877538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.276 3.724 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.696 3.304 13 O -0.614 6.614 14 N -0.676 5.676 15 C 0.150 3.850 16 C -0.112 4.112 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.171 4.171 20 C 0.063 3.937 21 O -0.320 6.320 22 C 0.610 3.390 23 F -0.164 7.164 24 F -0.130 7.130 25 F -0.160 7.160 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.002 0.998 31 H 0.267 0.733 32 H 0.417 0.583 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.171 0.829 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -22.823 3.736 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.353 5.353 3 C 0.154 3.846 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.199 1.199 12 C 0.397 3.603 13 O -0.494 6.494 14 N -0.327 5.327 15 C 0.054 3.946 16 C -0.133 4.133 17 C -0.130 4.130 18 C -0.108 4.108 19 C -0.190 4.190 20 C 0.019 3.981 21 O -0.241 6.241 22 C 0.520 3.480 23 F -0.146 7.146 24 F -0.111 7.111 25 F -0.142 7.142 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.257 0.743 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.810 -22.398 3.827 24.027 hybrid contribution -0.341 0.671 -0.529 0.920 sum -8.150 -21.726 3.299 23.438 Atomic orbital electron populations 1.21883 0.78067 1.03860 1.02579 1.47373 1.07927 1.04896 1.75101 1.18741 0.90962 0.78698 0.96182 1.21696 1.36949 1.06546 0.92973 0.92912 1.25822 0.94850 0.96358 1.01887 1.70046 1.38895 1.14787 1.32997 0.85410 0.78050 0.78155 0.79139 1.18903 1.20625 1.19858 1.16027 0.85115 0.80920 0.78200 1.90841 1.13388 1.86323 1.58822 1.42533 1.10664 1.02354 1.77129 1.17017 0.94558 0.83768 0.99252 1.21351 0.93597 0.99314 0.99000 1.21433 1.00933 0.91399 0.99236 1.21330 0.93864 1.00108 0.95490 1.21585 0.97798 0.95308 1.04303 1.18428 0.84669 0.96380 0.98651 1.86336 1.34543 1.35970 1.67203 1.19205 0.76155 0.76473 0.76201 1.93305 1.69346 1.91798 1.60125 1.93318 1.39199 1.93258 1.85325 1.93305 1.95740 1.56782 1.68377 0.91168 0.90371 0.90021 0.95237 0.97983 0.92362 0.74306 0.85677 0.82707 0.81113 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.24 127.77 1.31 3.70 16 2 N -0.62 -26.91 2.86 -869.29 -2.48 -29.39 16 3 C 0.28 14.91 5.16 85.63 0.44 15.35 16 4 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.57 5.46 84.66 0.46 1.03 16 7 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 8 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.70 30.52 8.13 179.05 1.46 31.97 16 13 O -0.61 -32.19 13.34 -4.01 -0.05 -32.25 16 14 N -0.68 -22.77 5.07 -316.79 -1.61 -24.37 16 15 C 0.15 4.73 6.32 38.17 0.24 4.97 16 16 C -0.11 -3.56 8.71 22.37 0.19 -3.37 16 17 C -0.11 -2.54 10.04 22.27 0.22 -2.31 16 18 C -0.09 -1.60 10.04 22.28 0.22 -1.38 16 19 C -0.17 -3.46 8.26 22.35 0.18 -3.28 16 20 C 0.06 1.62 6.50 22.59 0.15 1.77 16 21 O -0.32 -7.48 9.93 -93.32 -0.93 -8.41 16 22 C 0.61 11.35 3.42 113.37 0.39 11.73 16 23 F -0.16 -3.02 15.56 44.97 0.70 -2.32 16 24 F -0.13 -2.31 17.53 44.97 0.79 -1.53 16 25 F -0.16 -2.68 15.57 44.97 0.70 -1.98 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 28 H 0.08 1.95 6.30 -2.39 -0.02 1.94 16 29 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 31 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.42 11.43 6.26 -92.70 -0.58 10.85 16 33 H 0.13 4.87 6.18 -2.91 -0.02 4.85 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 2.44 5.10 -2.91 -0.01 2.42 16 Total: -1.00 -72.20 323.46 5.52 -66.69 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.58 Total: 13.11 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 5.51 Total: 29.24 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.80 Total: -109.28 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.98 Total: -40.65 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 2.19 Total: -5.83 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.20 5.52 -66.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033621261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.416 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds