Wall clock time and date at job start Tue Mar 31 2020 11:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99860 * 2 1 4 4 C 1.50703 * 109.47268 * 269.99419 * 3 2 1 5 5 H 1.08001 * 119.99826 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00152 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99942 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99896 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47236 * 60.00250 * 8 6 4 10 10 H 1.48506 * 109.46998 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47287 * 299.99811 * 8 6 4 12 12 C 1.34776 * 119.99810 * 179.97438 * 2 1 3 13 13 O 1.21597 * 119.99630 * 180.02562 * 12 2 1 14 14 N 1.34771 * 120.00273 * 0.02562 * 12 2 1 15 15 C 1.40149 * 120.00041 * 184.58645 * 14 12 2 16 16 C 1.38839 * 120.01174 * 145.22496 * 15 14 12 17 17 C 1.38097 * 119.98120 * 180.22956 * 16 15 14 18 18 C 1.38711 * 120.01844 * 359.47998 * 17 16 15 19 19 O 1.35974 * 119.98873 * 180.27135 * 18 17 16 20 20 C 1.42900 * 117.00321 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.46894 * 59.99757 * 20 19 18 22 22 F 1.39898 * 109.47399 * 180.02562 * 20 19 18 23 23 F 1.39906 * 109.46890 * 300.00198 * 20 19 18 24 24 C 1.38709 * 120.02528 * 0.24944 * 18 17 16 25 25 C 1.38103 * 120.01774 * 0.02562 * 24 18 17 26 26 H 1.08993 * 109.47312 * 270.00188 * 1 2 3 27 27 H 1.09001 * 109.47061 * 30.00217 * 1 2 3 28 28 H 1.09001 * 109.46895 * 150.00060 * 1 2 3 29 29 H 1.09004 * 109.47185 * 29.99882 * 3 2 1 30 30 H 1.09002 * 109.47160 * 149.99942 * 3 2 1 31 31 H 0.96998 * 119.99613 * 179.97438 * 7 6 4 32 32 H 0.97004 * 119.99708 * 4.59123 * 14 12 2 33 33 H 1.07996 * 120.00887 * 359.97438 * 16 15 14 34 34 H 1.08008 * 119.99024 * 179.74856 * 17 16 15 35 35 H 1.08008 * 119.99305 * 180.02562 * 24 18 17 36 36 H 1.08001 * 120.00607 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6182 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.1392 3.5946 -4.1337 10 1 4.1795 4.7035 -3.4339 11 1 4.2397 2.3829 -4.1342 12 6 2.1388 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1623 -3.5461 0.0981 16 6 1.6063 -4.6136 0.7903 17 6 2.2961 -5.8058 0.8901 18 6 3.5393 -5.9405 0.2899 19 8 4.2155 -7.1164 0.3839 20 6 5.4901 -7.1851 -0.2586 21 9 6.3404 -6.2178 0.2878 22 9 6.0425 -8.4556 -0.0643 23 9 5.3350 -6.9491 -1.6288 24 6 4.0929 -4.8762 -0.4065 25 6 3.4067 -3.6816 -0.5023 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0301 4.4440 -0.8504 32 1 0.4973 -2.3357 -0.0671 33 1 0.6365 -4.5102 1.2540 34 1 1.8654 -6.6349 1.4319 35 1 5.0608 -4.9819 -0.8740 36 1 3.8377 -2.8532 -1.0449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033923641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:07 Heat of formation + Delta-G solvation = -180.622517 kcal Electronic energy + Delta-G solvation = -26311.492348 eV Core-core repulsion = 21767.791408 eV Total energy + Delta-G solvation = -4543.700941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.58857 -48.33282 -48.16519 -40.61550 -39.63869 -37.64508 -35.00116 -34.21301 -32.55985 -31.15891 -29.26436 -27.70200 -26.19173 -25.63708 -23.53830 -23.07457 -22.04942 -19.82673 -19.67808 -19.28968 -19.15911 -17.92316 -17.00216 -16.74024 -16.50617 -15.43256 -15.31757 -15.10888 -15.02461 -14.73489 -14.64193 -14.62417 -14.55386 -14.28206 -14.12223 -14.02459 -13.50363 -13.38037 -13.25091 -12.89649 -12.60855 -12.22136 -12.18025 -11.91352 -11.26605 -11.23233 -10.96033 -10.60534 -10.20456 -9.99503 -9.71623 -9.39140 -9.06886 -8.46706 -8.01149 -7.63911 -6.07776 -4.13027 1.11623 1.26254 1.35489 2.70864 3.06889 3.29743 3.34666 3.37681 3.44530 3.63071 3.81101 3.93270 4.32966 4.46853 4.63646 4.69326 4.96179 5.19461 5.26194 5.36014 5.41793 5.65694 5.77878 5.84247 6.05222 6.16341 6.29036 6.34490 6.58123 6.72367 7.07091 7.28234 7.42465 7.58282 7.89228 8.18058 8.47685 8.86984 9.13339 9.52420 11.00103 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.003014 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.545004 B = 9289.108451 C =10311.653763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.697 3.303 13 O -0.568 6.568 14 N -0.696 5.696 15 C 0.168 3.832 16 C -0.122 4.122 17 C -0.103 4.103 18 C 0.070 3.930 19 O -0.313 6.313 20 C 0.603 3.397 21 F -0.164 7.164 22 F -0.136 7.136 23 F -0.166 7.166 24 C -0.167 4.167 25 C -0.081 4.081 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -20.831 2.688 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.345 5.345 3 C 0.140 3.860 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.398 3.602 13 O -0.444 6.444 14 N -0.346 5.346 15 C 0.071 3.929 16 C -0.143 4.143 17 C -0.122 4.122 18 C 0.028 3.972 19 O -0.233 6.233 20 C 0.512 3.488 21 F -0.146 7.146 22 F -0.118 7.118 23 F -0.148 7.148 24 C -0.186 4.186 25 C -0.101 4.101 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.588 -20.643 2.819 21.141 hybrid contribution -0.014 0.406 -1.171 1.240 sum -3.602 -20.237 1.648 20.621 Atomic orbital electron populations 1.21608 0.81560 1.02440 1.00503 1.47517 1.05806 1.06295 1.74929 1.19273 0.92408 0.76741 0.97546 1.21405 1.36817 1.06344 0.92295 0.92504 1.24927 0.95286 0.96340 0.97473 1.69921 1.38207 1.14372 1.30814 0.86549 0.78359 0.77857 0.84586 1.20262 1.21141 1.20174 1.15935 0.85585 0.80066 0.78564 1.90895 1.11320 1.85434 1.56722 1.43005 1.10077 1.03525 1.77974 1.17609 0.93492 0.85488 0.96300 1.20687 1.01387 0.92245 1.00012 1.20048 0.91826 0.98559 1.01747 1.18610 0.93334 0.83079 1.02212 1.86369 1.28663 1.36450 1.71807 1.19360 0.79257 0.74723 0.75452 1.93322 1.71952 1.63664 1.85655 1.93288 1.84159 1.39226 1.95088 1.93305 1.95171 1.94097 1.32224 1.21434 1.01557 0.93297 1.02282 1.21323 0.94125 0.97019 0.97665 0.93523 0.90179 0.93138 0.94686 0.93606 0.92587 0.75950 0.84463 0.84384 0.84902 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.24 59.85 0.61 1.82 16 2 N -0.61 -12.45 2.86 -188.74 -0.54 -12.99 16 3 C 0.26 6.61 5.16 -5.19 -0.03 6.58 16 4 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.70 14.19 8.12 -86.92 -0.71 13.48 16 13 O -0.57 -13.93 13.36 5.28 0.07 -13.86 16 14 N -0.70 -10.45 5.22 -14.19 -0.07 -10.52 16 15 C 0.17 2.42 6.30 -83.61 -0.53 1.90 16 16 C -0.12 -1.35 9.96 -39.41 -0.39 -1.74 16 17 C -0.10 -1.11 9.98 -39.46 -0.39 -1.50 16 18 C 0.07 0.88 6.48 -39.23 -0.25 0.63 16 19 O -0.31 -3.66 10.37 -19.66 -0.20 -3.87 16 20 C 0.60 6.61 3.42 101.05 0.35 6.95 16 21 F -0.16 -1.93 15.56 2.25 0.04 -1.89 16 22 F -0.14 -1.36 17.53 2.25 0.04 -1.32 16 23 F -0.17 -1.85 15.56 2.25 0.04 -1.81 16 24 C -0.17 -2.33 8.25 -39.46 -0.33 -2.66 16 25 C -0.08 -1.29 8.69 -39.41 -0.34 -1.64 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.05 0.56 6.30 -51.93 -0.33 0.24 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.40 4.59 6.52 -40.82 -0.27 4.32 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.13 1.77 5.09 -52.48 -0.27 1.50 16 36 H 0.16 2.92 6.22 -52.49 -0.33 2.59 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -32.30 324.14 -5.69 -37.99 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.22 Total: 1.86 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -2.43 Total: 10.45 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.12 Total: -48.98 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.13 Total: -17.73 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.30 -5.69 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033923641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.630 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds