Wall clock time and date at job start Tue Mar 31 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99860 * 2 1 4 4 C 1.50703 * 109.47268 * 269.99419 * 3 2 1 5 5 H 1.08001 * 119.99826 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00152 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99942 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99896 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47236 * 60.00250 * 8 6 4 10 10 H 1.48506 * 109.46998 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47287 * 299.99811 * 8 6 4 12 12 C 1.34776 * 119.99810 * 179.97438 * 2 1 3 13 13 O 1.21597 * 119.99630 * 180.02562 * 12 2 1 14 14 N 1.34771 * 120.00273 * 0.02562 * 12 2 1 15 15 C 1.40149 * 120.00041 * 184.58645 * 14 12 2 16 16 C 1.38839 * 120.01174 * 145.22496 * 15 14 12 17 17 C 1.38097 * 119.98120 * 180.22956 * 16 15 14 18 18 C 1.38711 * 120.01844 * 359.47998 * 17 16 15 19 19 O 1.35974 * 119.98873 * 180.27135 * 18 17 16 20 20 C 1.42900 * 117.00321 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.46894 * 59.99757 * 20 19 18 22 22 F 1.39898 * 109.47399 * 180.02562 * 20 19 18 23 23 F 1.39906 * 109.46890 * 300.00198 * 20 19 18 24 24 C 1.38709 * 120.02528 * 0.24944 * 18 17 16 25 25 C 1.38103 * 120.01774 * 0.02562 * 24 18 17 26 26 H 1.08993 * 109.47312 * 270.00188 * 1 2 3 27 27 H 1.09001 * 109.47061 * 30.00217 * 1 2 3 28 28 H 1.09001 * 109.46895 * 150.00060 * 1 2 3 29 29 H 1.09004 * 109.47185 * 29.99882 * 3 2 1 30 30 H 1.09002 * 109.47160 * 149.99942 * 3 2 1 31 31 H 0.96998 * 119.99613 * 179.97438 * 7 6 4 32 32 H 0.97004 * 119.99708 * 4.59123 * 14 12 2 33 33 H 1.07996 * 120.00887 * 359.97438 * 16 15 14 34 34 H 1.08008 * 119.99024 * 179.74856 * 17 16 15 35 35 H 1.08008 * 119.99305 * 180.02562 * 24 18 17 36 36 H 1.08001 * 120.00607 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6182 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.1392 3.5946 -4.1337 10 1 4.1795 4.7035 -3.4339 11 1 4.2397 2.3829 -4.1342 12 6 2.1388 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1623 -3.5461 0.0981 16 6 1.6063 -4.6136 0.7903 17 6 2.2961 -5.8058 0.8901 18 6 3.5393 -5.9405 0.2899 19 8 4.2155 -7.1164 0.3839 20 6 5.4901 -7.1851 -0.2586 21 9 6.3404 -6.2178 0.2878 22 9 6.0425 -8.4556 -0.0643 23 9 5.3350 -6.9491 -1.6288 24 6 4.0929 -4.8762 -0.4065 25 6 3.4067 -3.6816 -0.5023 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0301 4.4440 -0.8504 32 1 0.4973 -2.3357 -0.0671 33 1 0.6365 -4.5102 1.2540 34 1 1.8654 -6.6349 1.4319 35 1 5.0608 -4.9819 -0.8740 36 1 3.8377 -2.8532 -1.0449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033923641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:06 Heat of formation + Delta-G solvation = -201.893592 kcal Electronic energy + Delta-G solvation = -26312.414731 eV Core-core repulsion = 21767.791408 eV Total energy + Delta-G solvation = -4544.623324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.48422 -49.20025 -49.08547 -41.82377 -40.86123 -38.79034 -36.65766 -35.60904 -34.55707 -32.16969 -30.57940 -29.35951 -27.43589 -26.85864 -25.18509 -24.20395 -23.31764 -21.07353 -20.78487 -20.19317 -20.17703 -19.20270 -18.67002 -18.34676 -17.68007 -16.88736 -16.62072 -16.26368 -16.12154 -16.06667 -15.75288 -15.54777 -15.48833 -15.47231 -15.19753 -15.12876 -14.85625 -14.55196 -14.36045 -14.25691 -13.88120 -13.72289 -13.48370 -13.32235 -13.12118 -12.79515 -12.53111 -12.29962 -12.17104 -11.74949 -11.29474 -10.94106 -10.63455 -10.11109 -9.54650 -8.92648 -8.21391 -6.36467 0.07938 0.24620 0.43833 1.36994 1.41123 1.48087 1.68793 1.81600 2.10882 2.38587 2.64045 2.74210 2.95510 3.04049 3.09036 3.63604 3.69367 4.04976 4.22962 4.29965 4.37354 4.63157 4.67869 4.82244 4.92324 4.98517 5.12736 5.19339 5.25482 5.32784 5.49855 5.54765 5.78144 5.94850 6.05868 6.07608 6.72281 7.04556 7.30662 7.61440 8.84736 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.003014 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.545004 B = 9289.108451 C =10311.653763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.619 5.619 3 C 0.276 3.724 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.691 3.309 13 O -0.621 6.621 14 N -0.672 5.672 15 C 0.143 3.857 16 C -0.097 4.097 17 C -0.090 4.090 18 C 0.069 3.931 19 O -0.308 6.308 20 C 0.606 3.394 21 F -0.170 7.170 22 F -0.128 7.128 23 F -0.168 7.168 24 C -0.177 4.177 25 C -0.108 4.108 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.031 0.969 30 H -0.001 1.001 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.129 0.871 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 -22.877 2.773 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.353 5.353 3 C 0.154 3.846 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.206 1.206 12 C 0.393 3.607 13 O -0.501 6.501 14 N -0.324 5.324 15 C 0.047 3.953 16 C -0.117 4.117 17 C -0.109 4.109 18 C 0.026 3.974 19 O -0.228 6.228 20 C 0.515 3.485 21 F -0.152 7.152 22 F -0.109 7.109 23 F -0.150 7.150 24 C -0.196 4.196 25 C -0.129 4.129 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.264 0.736 33 H 0.199 0.801 34 H 0.195 0.805 35 H 0.147 0.853 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.070 -22.744 2.905 23.718 hybrid contribution 0.741 0.909 -1.143 1.638 sum -5.329 -21.835 1.761 22.544 Atomic orbital electron populations 1.21927 0.77714 1.04031 1.02844 1.47361 1.08095 1.04760 1.75114 1.18700 0.90965 0.79000 0.95932 1.21699 1.36928 1.06477 0.93167 0.92904 1.25821 0.94926 0.96449 1.01813 1.70039 1.38869 1.14823 1.33005 0.85501 0.78845 0.77294 0.79356 1.18371 1.20369 1.20601 1.16136 0.85091 0.81251 0.78219 1.90867 1.13957 1.86429 1.58862 1.42571 1.10774 1.02048 1.77022 1.17852 0.93421 0.86090 0.97891 1.21079 1.02457 0.90476 0.97703 1.20554 0.90563 0.99427 1.00362 1.18821 0.94051 0.82722 1.01777 1.86374 1.28768 1.35896 1.71779 1.19317 0.79061 0.74839 0.75302 1.93313 1.72133 1.64054 1.85749 1.93308 1.84001 1.38585 1.95029 1.93304 1.95161 1.94142 1.32350 1.21368 1.01610 0.93408 1.03197 1.21071 0.95743 0.96750 0.99318 0.90711 0.90902 0.89295 0.95148 0.98278 0.92379 0.73559 0.80143 0.80475 0.85285 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.24 127.77 1.31 3.38 16 2 N -0.62 -25.49 2.86 -869.30 -2.48 -27.97 16 3 C 0.28 14.65 5.16 85.63 0.44 15.09 16 4 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.52 5.46 84.65 0.46 0.98 16 7 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 8 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.69 28.73 8.12 179.06 1.45 30.18 16 13 O -0.62 -32.40 13.36 -4.02 -0.05 -32.45 16 14 N -0.67 -19.31 5.22 -317.06 -1.66 -20.97 16 15 C 0.14 3.96 6.30 38.10 0.24 4.20 16 16 C -0.10 -1.74 9.96 22.38 0.22 -1.52 16 17 C -0.09 -1.57 9.98 22.35 0.22 -1.35 16 18 C 0.07 1.60 6.48 22.50 0.15 1.74 16 19 O -0.31 -6.58 10.37 -93.26 -0.97 -7.54 16 20 C 0.61 12.70 3.42 113.37 0.39 13.09 16 21 F -0.17 -4.00 15.56 44.97 0.70 -3.30 16 22 F -0.13 -2.38 17.53 44.97 0.79 -1.59 16 23 F -0.17 -3.66 15.56 44.97 0.70 -2.96 16 24 C -0.18 -5.01 8.25 22.35 0.18 -4.82 16 25 C -0.11 -3.59 8.69 22.38 0.19 -3.40 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 28 H 0.09 1.68 6.30 -2.39 -0.02 1.67 16 29 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 30 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.42 8.27 6.52 -92.71 -0.60 7.67 16 33 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.13 3.61 5.09 -2.91 -0.01 3.59 16 36 H 0.11 4.75 6.22 -2.91 -0.02 4.73 16 Total: -1.00 -75.24 324.14 5.40 -69.84 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.55 Total: 8.96 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 5.51 Total: 26.76 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -3.85 Total: -104.49 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.02 Total: -40.00 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 2.19 Total: -7.85 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.24 5.40 -69.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033923641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.056 kcal (2) G-P(sol) polarization free energy of solvation -75.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds