Wall clock time and date at job start Tue Mar 31 2020 11:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47584 * 2 1 4 4 C 1.46901 * 111.00266 * 193.95562 * 3 2 1 5 5 C 1.50703 * 109.46758 * 66.04627 * 4 3 2 6 6 H 1.07997 * 120.00042 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99914 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99734 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00254 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47183 * 60.00077 * 9 7 5 11 11 H 1.48505 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47245 * 300.00122 * 9 7 5 13 13 C 1.39673 * 110.99888 * 69.99980 * 3 2 1 14 14 C 1.38940 * 120.07103 * 63.95788 * 13 3 2 15 15 C 1.38081 * 119.92257 * 180.30262 * 14 13 3 16 16 C 1.38311 * 120.07458 * 359.43770 * 15 14 13 17 17 C 1.50703 * 119.92515 * 180.27984 * 16 15 14 18 18 F 1.39890 * 109.47238 * 270.28274 * 17 16 15 19 19 F 1.39910 * 109.46704 * 30.28302 * 17 16 15 20 20 F 1.39895 * 109.46920 * 150.27639 * 17 16 15 21 21 C 1.38268 * 120.14759 * 0.56217 * 16 15 14 22 22 C 1.38117 * 120.07717 * 359.72142 * 21 16 15 23 23 N 1.48003 * 120.04055 * 180.02562 * 22 21 16 24 24 O 1.21801 * 119.99675 * 359.97438 * 23 22 21 25 25 O 1.21795 * 120.00173 * 179.97438 * 23 22 21 26 26 H 1.08993 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46568 * 299.99938 * 1 2 3 28 28 H 1.09003 * 109.47293 * 59.99457 * 1 2 3 29 29 H 1.09002 * 109.46568 * 240.00062 * 2 1 3 30 30 H 1.08995 * 109.47373 * 120.00851 * 2 1 3 31 31 H 1.08997 * 109.47082 * 186.04619 * 4 3 2 32 32 H 1.08998 * 109.46788 * 306.04842 * 4 3 2 33 33 H 0.97003 * 119.99956 * 179.97438 * 8 7 5 34 34 H 1.08002 * 120.03516 * 0.02562 * 14 13 3 35 35 H 1.08004 * 119.95927 * 179.72378 * 15 14 13 36 36 H 1.07998 * 119.95923 * 179.74379 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4501 1.4376 -0.3307 5 6 3.6535 0.9853 -1.7539 6 1 2.8051 0.6889 -2.3528 7 6 4.9226 0.9510 -2.2916 8 7 5.9557 1.3125 -1.5623 9 14 5.1748 0.3912 -4.0557 10 1 4.4214 1.2853 -4.9713 11 1 6.6207 0.4443 -4.3900 12 1 4.6828 -1.0016 -4.2082 13 6 1.7662 2.0055 1.2253 14 6 2.3716 1.5333 2.3833 15 6 2.1138 2.1452 3.5940 16 6 1.2632 3.2343 3.6530 17 6 0.9892 3.9035 4.9752 18 9 -0.1141 3.2970 5.5851 19 9 2.1092 3.7749 5.8038 20 9 0.7185 5.2596 4.7642 21 6 0.6592 3.7067 2.5025 22 6 0.9080 3.0957 1.2891 23 7 0.2614 3.6025 0.0580 24 8 -0.4910 4.5586 0.1146 25 8 0.4817 3.0634 -1.0118 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8898 31 1 3.8114 2.4598 -0.2192 32 1 4.0028 0.7814 0.3416 33 1 6.8486 1.2880 -1.9405 34 1 3.0394 0.6858 2.3372 35 1 2.5806 1.7759 4.4952 36 1 -0.0077 4.5547 2.5527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044413428.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:54 Heat of formation + Delta-G solvation = -110.836812 kcal Electronic energy + Delta-G solvation = -27448.448980 eV Core-core repulsion = 22907.774175 eV Total energy + Delta-G solvation = -4540.674805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.43716 -47.94500 -47.89442 -41.78217 -39.98220 -37.15587 -35.85358 -32.92262 -32.18634 -31.60222 -30.04769 -27.19884 -26.41255 -25.14847 -23.28943 -22.71804 -22.06037 -20.54579 -19.47837 -18.76457 -18.76070 -18.04106 -17.30081 -17.06440 -16.81063 -16.07518 -15.61548 -15.20293 -14.83067 -14.69804 -14.54194 -14.31752 -14.21757 -14.05493 -14.03905 -13.86451 -13.44893 -13.02550 -12.74640 -12.38994 -12.31036 -11.99654 -11.48894 -11.19132 -11.01410 -10.90241 -10.76303 -10.66347 -10.60056 -10.51411 -10.18172 -9.74938 -9.52526 -9.24237 -8.59875 -7.83930 -6.18043 -4.20143 0.01525 0.49910 1.57354 1.73147 2.35498 2.98144 3.28435 3.32964 3.35627 3.37345 3.71212 3.94196 4.11356 4.34302 4.42010 4.51021 4.67156 4.89575 5.17070 5.18843 5.27521 5.42872 5.57841 5.60386 5.75582 5.81467 6.01411 6.08392 6.43675 6.50653 6.77226 6.88942 6.93536 7.54126 7.62443 7.88446 8.18666 8.22166 8.86461 9.44834 10.92835 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.004085 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.925125 B = 6852.034452 C = 7385.483791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 N -0.502 5.502 4 C 0.202 3.798 5 C -0.509 4.509 6 H 0.072 0.928 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.222 3.778 14 C -0.156 4.156 15 C -0.016 4.016 16 C -0.208 4.208 17 C 0.518 3.482 18 F -0.174 7.174 19 F -0.173 7.173 20 F -0.173 7.173 21 C -0.006 4.006 22 C -0.040 4.040 23 N 0.027 4.973 24 O -0.217 6.217 25 O -0.063 6.063 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.002 0.998 33 H 0.264 0.736 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 0.501 13.189 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 N -0.225 5.225 4 C 0.080 3.920 5 C -0.547 4.547 6 H 0.090 0.910 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.731 3.269 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.124 3.876 14 C -0.176 4.176 15 C -0.035 4.035 16 C -0.210 4.210 17 C 0.464 3.536 18 F -0.156 7.156 19 F -0.154 7.154 20 F -0.155 7.155 21 C -0.026 4.026 22 C -0.125 4.125 23 N 0.551 4.449 24 O -0.414 6.414 25 O -0.302 6.302 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.809 0.670 13.514 16.146 hybrid contribution 0.600 -0.304 -0.283 0.729 sum -8.210 0.367 13.231 15.576 Atomic orbital electron populations 1.21865 0.96075 1.01083 1.01830 1.22131 0.94500 0.87081 1.02427 1.60284 1.23581 1.17513 1.21144 1.19900 0.77107 0.97495 0.97488 1.21005 0.92999 1.44278 0.96397 0.90997 1.24973 0.95757 0.95286 0.98338 1.69936 0.99091 1.47847 1.36903 0.86464 0.76927 0.79271 0.84260 1.19826 1.21396 1.20125 1.19273 0.86837 0.89383 0.92075 1.21997 1.01759 1.02609 0.91273 1.21190 0.91851 0.91078 0.99417 1.19713 1.06895 1.02304 0.92119 1.17977 0.74349 0.76650 0.84639 1.93238 1.54358 1.83105 1.84856 1.93210 1.52322 1.95638 1.74279 1.93217 1.93758 1.33618 1.94870 1.20568 0.95438 0.97625 0.88971 1.21056 1.04557 1.01124 0.85733 1.43201 0.99426 0.99850 1.02426 1.94490 1.34281 1.19556 1.93101 1.94709 1.63260 1.57568 1.14639 0.92402 0.94756 0.91032 0.87699 0.95306 0.95081 0.98002 0.92634 0.82601 0.83313 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.95 37.16 0.37 -1.84 16 2 C 0.06 1.08 5.44 -3.82 -0.02 1.06 16 3 N -0.50 -9.74 2.33 -172.47 -0.40 -10.15 16 4 C 0.20 4.74 4.30 -4.97 -0.02 4.71 16 5 C -0.51 -13.16 8.31 -34.44 -0.29 -13.45 16 6 H 0.07 1.85 7.23 -52.49 -0.38 1.47 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.17 13.29 55.43 0.74 -24.43 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 C 0.22 3.73 3.73 -83.78 -0.31 3.42 16 14 C -0.16 -2.14 8.53 -39.38 -0.34 -2.47 16 15 C -0.02 -0.19 9.39 -39.61 -0.37 -0.56 16 16 C -0.21 -2.47 5.45 -104.58 -0.57 -3.04 16 17 C 0.52 5.62 3.36 36.01 0.12 5.74 16 18 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16 19 F -0.17 -1.84 16.46 2.25 0.04 -1.81 16 20 F -0.17 -1.97 16.46 2.25 0.04 -1.93 16 21 C -0.01 -0.09 8.90 -39.61 -0.35 -0.44 16 22 C -0.04 -0.66 6.87 -79.76 -0.55 -1.21 16 23 N 0.03 0.51 4.45 34.06 0.15 0.67 16 24 O -0.22 -4.02 18.45 -29.46 -0.54 -4.56 16 25 O -0.06 -1.32 16.97 -29.46 -0.50 -1.82 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.49 7.52 -51.93 -0.39 0.10 16 28 H 0.07 1.14 8.01 -51.93 -0.42 0.72 16 29 H 0.10 1.92 6.60 -51.93 -0.34 1.58 16 30 H 0.03 0.44 7.07 -51.93 -0.37 0.07 16 31 H 0.03 0.81 8.06 -51.93 -0.42 0.40 16 32 H 0.00 0.05 7.47 -51.93 -0.39 -0.33 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.16 2.02 7.14 -52.49 -0.37 1.65 16 35 H 0.15 1.24 7.61 -52.48 -0.40 0.84 16 36 H 0.16 1.96 7.15 -52.49 -0.38 1.59 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -28.25 326.57 -6.38 -34.63 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.41 Total: -2.71 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.43 Total: -6.62 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.49 Total: -33.91 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -1.04 Total: -6.38 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.25 -6.38 -34.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044413428.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.206 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds