Wall clock time and date at job start Tue Mar 31 2020 12:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47360 * 2 1 4 4 N 1.46501 * 109.46817 * 183.96796 * 3 2 1 5 5 C 1.33282 * 120.00122 * 265.85546 * 4 3 2 6 6 H 1.07998 * 120.00270 * 141.60546 * 5 4 3 7 7 C 1.46787 * 119.99932 * 321.32429 * 5 4 3 8 8 N 1.29312 * 119.99991 * 160.39578 * 7 5 4 9 9 Si 1.86803 * 119.99799 * 340.39829 * 7 5 4 10 10 H 1.48504 * 109.47212 * 94.62320 * 9 7 5 11 11 H 1.48501 * 109.46864 * 214.61854 * 9 7 5 12 12 H 1.48494 * 109.47367 * 334.61824 * 9 7 5 13 13 C 1.34776 * 119.99823 * 85.85575 * 4 3 2 14 14 O 1.21546 * 119.99882 * 175.74178 * 13 4 3 15 15 C 1.47186 * 120.00315 * 355.74624 * 13 4 3 16 16 N 1.31682 * 126.82967 * 354.23606 * 15 13 4 17 17 N 1.28381 * 111.94592 * 179.86979 * 16 15 13 18 18 H 0.97000 * 124.37348 * 180.14698 * 17 16 15 19 19 C 1.37081 * 111.26658 * 0.41189 * 17 16 15 20 20 C 1.39127 * 134.67618 * 179.75972 * 19 17 16 21 21 C 1.37685 * 119.67091 * 179.97438 * 20 19 17 22 22 C 1.38900 * 120.74402 * 0.02562 * 21 20 19 23 23 N 1.48014 * 119.73310 * 179.97438 * 22 21 20 24 24 O 1.31696 * 120.00504 * 359.97438 * 23 22 21 25 25 O 1.31704 * 119.99681 * 179.97438 * 23 22 21 26 26 C 1.36705 * 120.52893 * 359.97127 * 22 21 20 27 27 C 1.39151 * 119.65212 * 0.02562 * 26 22 21 28 28 H 1.08999 * 109.46661 * 64.75037 * 1 2 3 29 29 H 1.08994 * 109.47293 * 184.75168 * 1 2 3 30 30 H 1.08997 * 109.46726 * 304.75692 * 1 2 3 31 31 H 1.08999 * 109.46920 * 239.99581 * 2 1 3 32 32 H 1.09005 * 109.46669 * 120.00109 * 2 1 3 33 33 H 1.08993 * 109.47323 * 63.97061 * 3 2 1 34 34 H 1.09004 * 109.46748 * 303.96676 * 3 2 1 35 35 H 0.97006 * 120.00192 * 180.02562 * 8 7 5 36 36 H 1.07999 * 120.16648 * 0.02562 * 20 19 17 37 37 H 1.08007 * 119.62645 * 179.97438 * 21 20 19 38 38 H 1.07990 * 120.17734 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5020 1.4435 -0.0956 5 6 4.2422 1.5007 1.0113 6 1 5.1539 0.9261 1.0816 7 6 3.8214 2.3496 2.1325 8 7 4.2930 2.1363 3.3175 9 14 2.6045 3.7379 1.8474 10 1 1.2302 3.2605 2.1451 11 1 2.9364 4.8779 2.7393 12 1 2.6795 4.1790 0.4315 13 6 4.0984 1.3864 -1.3029 14 8 5.3083 1.4652 -1.3873 15 6 3.2845 1.2288 -2.5191 16 7 1.9849 1.0255 -2.5783 17 7 1.5685 0.9325 -3.7892 18 1 0.6432 0.7849 -4.0403 19 6 2.6010 1.0628 -4.6814 20 6 2.7040 1.0382 -6.0686 21 6 3.9340 1.2075 -6.6638 22 6 5.0742 1.4022 -5.8948 23 7 6.3852 1.5813 -6.5581 24 8 6.4675 1.5551 -7.8722 25 8 7.4696 1.7668 -5.8340 26 6 4.9951 1.4299 -4.5303 27 6 3.7617 1.2609 -3.9086 28 1 -0.3632 0.4384 -0.9295 29 1 -0.3633 -1.0241 0.0851 30 1 -0.3633 0.5859 0.8443 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.7361 1.9354 0.9234 34 1 1.6199 1.9764 -0.8524 35 1 4.0147 2.6970 4.0585 36 1 1.8235 0.8878 -6.6757 37 1 4.0132 1.1878 -7.7408 38 1 5.8852 1.5821 -3.9380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:03 Heat of formation + Delta-G solvation = 82.811397 kcal Electronic energy + Delta-G solvation = -26581.050517 eV Core-core repulsion = 22622.922420 eV Total energy + Delta-G solvation = -3958.128097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.89085 -40.77303 -40.47411 -38.58367 -37.32266 -35.62070 -34.91997 -33.84407 -33.57547 -32.27183 -31.39827 -28.04440 -27.57933 -27.06191 -24.75313 -24.09561 -23.41431 -22.77141 -20.91558 -19.90171 -19.64050 -19.14960 -18.93268 -18.38008 -17.50315 -17.28353 -16.97296 -16.90474 -16.03072 -15.85696 -15.75650 -15.50645 -15.29561 -14.70866 -14.53641 -14.42000 -14.12499 -13.70641 -13.42726 -13.30969 -12.98999 -12.60323 -12.56601 -12.49575 -12.32007 -12.11922 -11.97767 -11.94410 -11.93337 -11.67936 -11.35615 -11.18676 -10.71267 -10.42363 -9.92480 -9.54249 -8.73140 -6.04104 -1.89719 -0.54376 -0.05091 0.00694 0.60895 1.13194 1.26276 1.35429 1.52033 2.01715 2.05590 2.28703 2.43308 2.80485 2.95946 3.06100 3.29820 3.48488 3.67035 3.84877 3.99316 4.10319 4.21695 4.27604 4.48072 4.56623 4.59979 4.62825 4.64864 4.73389 4.81213 5.02971 5.17265 5.20048 5.20464 5.32522 5.50623 5.56235 5.85852 6.01450 6.31123 6.54518 6.85046 7.16595 7.83653 8.39368 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.004268 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.037549 B = 6558.955200 C = 7697.583630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.085 3.915 4 N -0.414 5.414 5 C -0.383 4.383 6 H 0.047 0.953 7 C 0.036 3.964 8 N -0.853 5.853 9 Si 0.942 3.058 10 H -0.229 1.229 11 H -0.274 1.274 12 H -0.264 1.264 13 C 0.490 3.510 14 O -0.613 6.613 15 C 0.030 3.970 16 N -0.195 5.195 17 N -0.381 5.381 18 H 0.475 0.525 19 C 0.127 3.873 20 C -0.070 4.070 21 C -0.034 4.034 22 C -0.034 4.034 23 N -0.008 5.008 24 O -0.131 6.131 25 O -0.267 6.267 26 C 0.025 3.975 27 C -0.150 4.150 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.296 0.704 36 H 0.219 0.781 37 H 0.197 0.803 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 -2.020 -18.141 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.037 4.037 4 N -0.129 5.129 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.483 5.483 9 Si 0.763 3.237 10 H -0.153 1.153 11 H -0.200 1.200 12 H -0.188 1.188 13 C 0.281 3.719 14 O -0.499 6.499 15 C -0.139 4.139 16 N -0.025 5.025 17 N -0.102 5.102 18 H 0.327 0.673 19 C 0.008 3.992 20 C -0.091 4.091 21 C -0.055 4.055 22 C -0.123 4.123 23 N 0.465 4.535 24 O -0.341 6.341 25 O -0.437 6.437 26 C 0.003 3.997 27 C -0.159 4.159 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.236 0.764 37 H 0.214 0.786 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.212 -2.137 -16.743 25.573 hybrid contribution 1.592 0.588 0.274 1.719 sum -17.620 -1.548 -16.469 24.168 Atomic orbital electron populations 1.21630 0.92403 1.02550 1.02693 1.21657 0.98004 0.95020 1.00995 1.22341 0.79923 0.99564 1.01866 1.42527 1.06289 1.60325 1.03798 1.19434 1.09945 1.29641 0.92205 0.93483 1.27774 0.98490 0.98087 0.93430 1.68765 1.41168 1.37149 1.01258 0.85944 0.79841 0.78270 0.79596 1.15265 1.20031 1.18806 1.17344 0.86837 0.85637 0.82130 1.90618 1.15390 1.57966 1.85893 1.22827 0.90019 1.07995 0.93068 1.73402 1.11976 1.13470 1.03625 1.43409 1.11115 1.55695 0.99979 0.67252 1.19670 0.87144 0.98420 0.93949 1.20565 0.99171 1.01153 0.88207 1.21196 0.87744 0.93784 1.02826 1.20066 0.81708 1.18641 0.91836 1.50658 1.04800 0.95312 1.02736 1.96165 1.95006 1.53171 0.89776 1.96371 1.24137 1.60208 1.62991 1.20046 0.98453 0.88769 0.92440 1.19225 0.93890 1.10452 0.92326 0.90512 0.91330 0.92918 0.92082 0.94209 0.92243 0.88362 0.89232 0.76450 0.78601 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.91 71.98 0.71 -2.26 16 2 C -0.12 -3.86 5.60 30.60 0.17 -3.69 16 3 C 0.09 3.30 3.63 86.38 0.31 3.61 16 4 N -0.41 -20.78 2.16 -634.66 -1.37 -22.14 16 5 C -0.38 -22.57 9.54 86.71 0.83 -21.74 16 6 H 0.05 3.26 7.93 -2.91 -0.02 3.23 16 7 C 0.04 1.95 5.48 87.30 0.48 2.43 16 8 N -0.85 -47.79 13.88 23.26 0.32 -47.47 16 9 Si 0.94 39.98 25.11 68.60 1.72 41.70 16 10 H -0.23 -8.24 6.77 99.48 0.67 -7.57 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.49 24.64 7.57 86.59 0.66 25.30 16 14 O -0.61 -36.45 16.27 -3.86 -0.06 -36.51 16 15 C 0.03 1.12 6.76 43.80 0.30 1.41 16 16 N -0.20 -5.15 7.12 -44.92 -0.32 -5.47 16 17 N -0.38 -5.68 6.85 -51.59 -0.35 -6.03 16 18 H 0.48 1.74 8.96 -220.04 -1.97 -0.23 16 19 C 0.13 2.22 7.38 39.17 0.29 2.50 16 20 C -0.07 -0.61 10.08 22.35 0.23 -0.39 16 21 C -0.03 -0.48 9.54 22.30 0.21 -0.27 16 22 C -0.03 -0.90 6.85 36.18 0.25 -0.66 16 23 N -0.01 -0.27 4.98 -46.94 -0.23 -0.50 16 24 O -0.13 -3.80 19.12 3.52 0.07 -3.73 16 25 O -0.27 -10.78 19.11 3.51 0.07 -10.71 16 26 C 0.03 0.84 9.38 22.13 0.21 1.05 16 27 C -0.15 -4.63 6.34 -20.14 -0.13 -4.76 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.98 6.65 -2.39 -0.02 1.97 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 2.37 3.48 -2.39 -0.01 2.36 16 34 H 0.10 3.32 5.77 -2.38 -0.01 3.31 16 35 H 0.30 14.75 8.26 -92.70 -0.77 13.99 16 36 H 0.22 -0.73 8.06 -2.91 -0.02 -0.75 16 37 H 0.20 1.53 7.55 -2.91 -0.02 1.51 16 38 H 0.13 5.38 7.13 -2.92 -0.02 5.35 16 Total: -1.00 -84.72 329.99 3.50 -81.23 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -0.86 Total: 7.10 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.51 Total: 2.55 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.95 Total: -81.62 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: 0.07 Total: -50.96 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 1.72 Total: 41.70 kcal Total: -84.72 3.50 -81.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.038 kcal (2) G-P(sol) polarization free energy of solvation -84.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds