Wall clock time and date at job start Tue Mar 31 2020 11:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48507 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47362 * 299.99629 * 3 2 1 6 6 H 1.48496 * 109.47251 * 60.00357 * 3 2 1 7 7 C 1.37874 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47032 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.47090 * 180.02562 * 11 10 9 13 13 O 1.42094 * 108.57698 * 65.51298 * 12 11 10 14 14 O 1.42099 * 108.57712 * 294.48959 * 12 11 10 15 15 C 1.81398 * 101.91940 * 179.97438 * 12 11 10 16 16 C 1.50704 * 109.46811 * 179.97438 * 15 12 11 17 17 C 1.36130 * 120.17091 * 90.00550 * 16 15 12 18 18 C 1.39333 * 120.98770 * 180.23690 * 17 16 15 19 19 C 1.36122 * 120.98705 * 359.43812 * 18 17 16 20 20 C 1.40503 * 119.65379 * 0.57947 * 19 18 17 21 21 C 1.40551 * 121.28531 * 179.74037 * 20 19 18 22 22 C 1.36089 * 119.65002 * 179.97438 * 21 20 19 23 23 C 1.39379 * 120.99662 * 0.02562 * 22 21 20 24 24 C 1.36088 * 120.99109 * 359.95651 * 23 22 21 25 25 C 1.40500 * 120.17476 * 269.97635 * 16 15 12 26 26 H 0.97007 * 120.00071 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47205 * 60.00409 * 9 7 2 28 28 H 1.08997 * 109.47106 * 300.00414 * 9 7 2 29 29 H 1.09001 * 109.47434 * 60.00210 * 10 9 7 30 30 H 1.08997 * 109.47294 * 299.99992 * 10 9 7 31 31 H 1.08995 * 109.47306 * 60.00004 * 11 10 9 32 32 H 1.08997 * 109.46943 * 300.00046 * 11 10 9 33 33 H 1.08999 * 109.47224 * 60.00155 * 15 12 11 34 34 H 1.08996 * 109.47367 * 299.99656 * 15 12 11 35 35 H 1.08002 * 119.50229 * 359.94895 * 17 16 15 36 36 H 1.08000 * 119.50342 * 179.71952 * 18 17 16 37 37 H 1.08003 * 120.17549 * 180.28394 * 19 18 17 38 38 H 1.07997 * 120.17348 * 359.92136 * 21 20 19 39 39 H 1.08001 * 119.50325 * 179.97438 * 22 21 20 40 40 H 1.07993 * 119.50671 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.17518 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6591 -6.3659 -0.0004 13 8 3.3767 -6.3472 1.2259 14 8 3.3786 -6.3471 -1.2257 15 6 1.5536 -7.8040 -0.0005 16 6 2.3739 -9.0682 -0.0006 17 6 2.7462 -9.6422 1.1763 18 6 3.5088 -10.8082 1.1961 19 6 3.8940 -11.4134 0.0393 20 6 3.5292 -10.8499 -1.1950 21 6 3.9129 -11.4430 -2.4100 22 6 3.5407 -10.8691 -3.5865 23 6 2.7834 -9.6992 -3.6064 24 6 2.3934 -9.0971 -2.4500 25 6 2.7580 -9.6608 -1.2152 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.8539 -5.0446 -0.8913 32 1 0.8533 -5.0451 0.8886 33 1 0.9251 -7.7792 -0.8908 34 1 0.9245 -7.7788 0.8892 35 1 2.4500 -9.1844 2.1086 36 1 3.7946 -11.2408 2.1436 37 1 4.4811 -12.3194 0.0700 38 1 4.5008 -12.3490 -2.4100 39 1 3.8372 -11.3266 -4.5188 40 1 2.5017 -9.2640 -4.5538 41 1 1.8064 -8.1910 -2.4808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067224945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:51 Heat of formation + Delta-G solvation = -65.962629 kcal Electronic energy + Delta-G solvation = -23421.957051 eV Core-core repulsion = 19971.378091 eV Total energy + Delta-G solvation = -3450.578960 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43507 -38.03859 -37.56684 -37.07559 -36.44945 -34.98370 -34.17306 -31.27726 -31.13416 -29.74369 -28.36099 -25.61152 -24.29054 -23.96054 -22.55797 -21.76077 -19.87100 -18.65405 -18.48662 -18.10509 -17.69483 -17.37264 -17.03795 -16.69159 -16.47042 -15.85149 -15.47881 -15.25979 -14.69234 -14.53452 -14.51096 -14.41438 -14.06248 -13.77527 -13.52243 -13.33179 -13.09957 -13.05427 -12.99455 -12.90762 -12.77563 -12.60681 -12.56280 -12.13788 -11.95234 -11.88418 -11.75890 -11.74993 -11.36468 -11.04893 -10.66054 -10.58991 -9.58926 -8.81558 -8.24233 -6.35024 -1.18222 -0.36226 0.04007 1.05786 1.38522 1.39148 1.52634 1.81135 2.05482 2.38573 2.60723 3.01259 3.09209 3.13753 3.31442 3.66581 3.78034 3.83189 3.92216 3.95664 4.08921 4.15240 4.29981 4.37945 4.41848 4.43007 4.49883 4.63594 4.65755 4.84287 4.94574 4.96406 5.04849 5.17034 5.23363 5.30664 5.43113 5.44278 5.59179 5.62275 5.62906 5.78357 5.85490 6.06679 6.19083 6.80288 7.34249 8.87413 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.002707 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.768546 B =10339.989416 C =10875.928050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.597 4.597 12 S 2.403 3.597 13 O -0.974 6.974 14 O -0.969 6.969 15 C -0.553 4.553 16 C -0.104 4.104 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.096 4.096 20 C -0.079 4.079 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.065 4.065 26 H 0.266 0.734 27 H 0.006 0.994 28 H 0.006 0.994 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.143 0.857 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 -27.757 -2.525 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.727 4.727 12 S 2.592 3.408 13 O -0.971 6.971 14 O -0.966 6.966 15 C -0.682 4.682 16 C -0.105 4.105 17 C -0.124 4.124 18 C -0.146 4.146 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.066 4.066 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.198 0.802 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.877 -27.584 -2.528 27.969 hybrid contribution -0.720 1.347 0.014 1.527 sum 3.157 -26.237 -2.514 26.545 Atomic orbital electron populations 1.70069 1.07545 1.27874 1.51389 1.25919 0.95845 1.03168 0.94541 0.85435 0.78990 0.78854 0.78031 1.18996 1.20069 1.20050 1.21758 0.93627 0.92655 1.51058 0.92526 1.18986 0.94001 0.91682 0.96123 1.21302 0.98670 0.92740 1.01753 1.30287 1.15962 1.12718 1.13684 1.08477 0.79135 0.78876 0.74264 1.93502 1.70404 1.86612 1.46592 1.93520 1.70233 1.86467 1.46377 1.29242 1.13319 1.09949 1.15673 1.18948 1.01424 0.96263 0.93898 1.21289 0.97103 0.96104 0.97948 1.21226 0.97925 0.95363 1.00107 1.21514 0.98638 1.00393 0.90852 1.18474 0.98718 0.94967 0.95717 1.21400 0.99673 1.00676 0.90951 1.21262 0.97646 0.95636 0.99480 1.21249 0.97550 0.96004 0.98811 1.21318 1.01144 1.00135 0.92212 1.18215 0.98943 0.95935 0.93479 0.92561 0.97580 0.97591 0.92072 0.92023 0.82947 0.82903 0.81450 0.80223 0.83667 0.82608 0.82174 0.82537 0.83066 0.83963 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.11 -4.45 5.16 30.60 0.16 -4.30 16 11 C -0.60 -17.52 5.81 71.98 0.42 -17.10 16 12 S 2.40 69.49 4.70 -56.49 -0.27 69.22 16 13 O -0.97 -34.64 18.10 -127.37 -2.30 -36.95 16 14 O -0.97 -34.54 17.83 -127.37 -2.27 -36.81 16 15 C -0.55 -10.45 5.46 71.24 0.39 -10.06 16 16 C -0.10 -2.40 5.15 -19.80 -0.10 -2.50 16 17 C -0.10 -2.16 9.59 22.04 0.21 -1.95 16 18 C -0.13 -2.20 9.95 22.04 0.22 -1.98 16 19 C -0.10 -1.61 9.77 22.33 0.22 -1.39 16 20 C -0.08 -1.67 5.74 -21.30 -0.12 -1.79 16 21 C -0.11 -1.82 9.77 22.33 0.22 -1.60 16 22 C -0.12 -2.01 9.95 22.04 0.22 -1.79 16 23 C -0.12 -2.32 9.95 22.04 0.22 -2.11 16 24 C -0.13 -3.05 9.01 22.33 0.20 -2.85 16 25 C -0.07 -1.60 5.74 -21.30 -0.12 -1.72 16 26 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.17 2.29 6.43 -2.39 -0.02 2.27 16 34 H 0.18 2.07 8.08 -2.39 -0.02 2.05 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.13 2.75 6.37 -2.91 -0.02 2.74 16 Total: -1.00 -81.74 359.48 1.46 -80.28 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.02 Total: 13.65 kcal Atomic # 6 Polarization: -83.52 SS G_CDS: 2.97 Total: -80.55 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -4.58 Total: -73.76 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 69.49 SS G_CDS: -0.27 Total: 69.22 kcal Total: -81.74 1.46 -80.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067224945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.322 kcal (2) G-P(sol) polarization free energy of solvation -81.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds