Wall clock time and date at job start Tue Mar 31 2020 11:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47196 * 2 1 4 4 C 1.37096 * 120.00375 * 264.77064 * 3 2 1 5 5 H 1.07996 * 120.00640 * 138.85357 * 4 3 2 6 6 C 1.38956 * 119.99628 * 318.84864 * 4 3 2 7 7 N 1.31416 * 119.99932 * 341.83740 * 6 4 3 8 8 Si 1.86795 * 119.99980 * 161.83247 * 6 4 3 9 9 H 1.48501 * 109.46890 * 59.99997 * 8 6 4 10 10 H 1.48500 * 109.47353 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47294 * 300.00310 * 8 6 4 12 12 C 1.34781 * 119.99853 * 84.76799 * 3 2 1 13 13 O 1.21291 * 119.99976 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00029 * 359.97438 * 12 3 2 15 15 N 1.46500 * 109.47060 * 180.02562 * 14 12 3 16 16 C 1.35759 * 119.62709 * 90.00192 * 15 14 12 17 17 C 1.35347 * 120.70032 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.02495 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47345 * 94.97283 * 18 17 16 20 20 F 1.39902 * 109.47265 * 214.97377 * 18 17 16 21 21 F 1.39905 * 109.47127 * 334.97607 * 18 17 16 22 22 C 1.40195 * 119.95149 * 359.97118 * 17 16 15 23 23 C 1.36403 * 119.26377 * 0.02562 * 22 17 16 24 24 C 1.34664 * 119.62042 * 270.26295 * 15 14 12 25 25 O 1.22056 * 119.98922 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47022 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.47184 * 60.00082 * 1 2 3 28 28 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47022 * 239.99778 * 2 1 3 30 30 H 1.08997 * 109.46660 * 120.00424 * 2 1 3 31 31 H 0.97003 * 119.99357 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47055 * 59.99999 * 14 12 3 33 33 H 1.08999 * 109.46805 * 300.00315 * 14 12 3 34 34 H 1.08003 * 119.64710 * 0.02562 * 16 15 14 35 35 H 1.07999 * 120.36895 * 179.97438 * 22 17 16 36 36 H 1.07994 * 120.34178 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0744 3.0218 -1.3535 6 6 3.0373 1.2842 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0502 1.9005 -3.9238 9 1 3.6538 3.2565 -3.9697 10 1 3.8483 0.9740 -4.7662 11 1 1.6580 1.9607 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5465 3.1957 1.1624 14 6 1.7787 1.3814 2.4620 15 7 1.9998 2.3129 3.5709 16 6 0.9932 3.1314 3.9707 17 6 1.1738 4.0006 4.9923 18 6 0.0457 4.9018 5.4240 19 9 -0.6421 4.3105 6.4891 20 9 0.5642 6.1357 5.8314 21 9 -0.8324 5.0959 4.3523 22 6 2.4108 4.0613 5.6493 23 6 3.4210 3.2381 5.2462 24 6 3.2010 2.3513 4.1784 25 8 4.0976 1.6122 3.8047 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 4.1599 -0.3118 -2.5279 32 1 2.4000 0.4967 2.6008 33 1 0.7291 1.0881 2.4380 34 1 0.0381 3.0884 3.4683 35 1 2.5625 4.7527 6.4650 36 1 4.3810 3.2706 5.7397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:39 Heat of formation + Delta-G solvation = -173.433294 kcal Electronic energy + Delta-G solvation = -27261.429847 eV Core-core repulsion = 22718.040655 eV Total energy + Delta-G solvation = -4543.389192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.21132 -47.72834 -47.66907 -41.45335 -38.58622 -37.02374 -35.32047 -34.48931 -32.19723 -30.90065 -29.62772 -28.62082 -25.86012 -24.96964 -23.77288 -22.59450 -22.26632 -19.69069 -18.71656 -18.54923 -18.35436 -17.24561 -17.12351 -16.69333 -16.48414 -15.75005 -15.20892 -14.87891 -14.62504 -14.53753 -14.35521 -14.12564 -14.10948 -13.92570 -13.83012 -13.76966 -13.58572 -13.12190 -12.91614 -12.43723 -12.36072 -12.00856 -11.92614 -11.85330 -11.46796 -11.16910 -11.10601 -10.55283 -10.48790 -10.38793 -10.27266 -9.90785 -9.03550 -8.71442 -8.11655 -7.59117 -6.42517 -4.12951 0.72834 1.50785 2.32001 2.78385 3.13395 3.20581 3.23175 3.53877 3.63294 3.73541 3.95016 4.06022 4.35395 4.38768 4.65206 4.71459 4.75841 4.90966 5.04204 5.21940 5.40831 5.51778 5.72191 5.79193 5.85554 5.94743 6.01530 6.11325 6.27011 6.33363 6.70762 6.97950 7.06218 7.48431 8.03438 8.14058 8.34178 9.02379 9.21525 9.78867 10.62381 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.003774 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.068802 B = 7417.935174 C = 7754.927444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.429 5.429 4 C -0.314 4.314 5 H 0.090 0.910 6 C 0.042 3.958 7 N -0.866 5.866 8 Si 0.922 3.078 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.446 3.554 13 O -0.568 6.568 14 C 0.066 3.934 15 N -0.465 5.465 16 C 0.228 3.772 17 C -0.313 4.313 18 C 0.531 3.469 19 F -0.180 7.180 20 F -0.176 7.176 21 F -0.178 7.178 22 C 0.005 3.995 23 C -0.230 4.230 24 C 0.522 3.478 25 O -0.524 6.524 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.171 0.829 35 H 0.142 0.858 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 2.193 13.236 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.148 5.148 4 C -0.442 4.442 5 H 0.108 0.892 6 C -0.164 4.164 7 N -0.503 5.503 8 Si 0.748 3.252 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.232 3.768 13 O -0.451 6.451 14 C -0.058 4.058 15 N -0.171 5.171 16 C 0.094 3.906 17 C -0.320 4.320 18 C 0.476 3.524 19 F -0.161 7.161 20 F -0.157 7.157 21 F -0.160 7.160 22 C -0.016 4.016 23 C -0.251 4.251 24 C 0.323 3.677 25 O -0.404 6.404 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.188 0.812 35 H 0.160 0.840 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.388 2.058 12.827 15.464 hybrid contribution -0.172 0.337 -0.833 0.915 sum -8.560 2.396 11.994 14.929 Atomic orbital electron populations 1.22234 0.97844 1.00746 1.01544 1.21576 0.91790 0.85409 1.04007 1.43392 1.55322 1.11684 1.04395 1.19339 1.35729 0.98767 0.90360 0.89245 1.25471 0.93700 0.96458 1.00763 1.69923 1.28685 1.17320 1.34325 0.86078 0.78453 0.78958 0.81702 1.19642 1.20847 1.19735 1.20261 0.83456 0.88575 0.84517 1.90585 1.49892 1.18430 1.86155 1.22237 1.04227 0.93424 0.85941 1.45277 1.11738 1.31631 1.28418 1.21624 0.93297 0.85512 0.90209 1.19030 0.97209 1.08167 1.07616 1.17713 0.81238 0.78729 0.74715 1.93216 1.81300 1.83780 1.57796 1.93188 1.86670 1.45120 1.90751 1.93197 1.71376 1.95376 1.56032 1.20920 0.90001 0.94766 0.95892 1.22012 1.01696 1.00853 1.00580 1.17226 0.81104 0.85424 0.83977 1.91008 1.40280 1.43058 1.66023 0.94156 0.92026 0.92653 0.87362 0.93209 0.91949 0.85750 0.87236 0.81173 0.84026 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.15 37.16 0.38 -2.20 16 2 C 0.10 1.92 5.41 -4.05 -0.02 1.90 16 3 N -0.43 -10.33 2.50 -114.82 -0.29 -10.62 16 4 C -0.31 -8.44 8.84 -14.93 -0.13 -8.57 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.08 4.95 -17.46 -0.09 0.99 16 7 N -0.87 -23.05 11.61 55.50 0.64 -22.40 16 8 Si 0.92 20.20 29.59 -169.99 -5.03 15.17 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.45 10.44 7.66 -10.98 -0.08 10.35 16 13 O -0.57 -15.55 16.34 5.55 0.09 -15.46 16 14 C 0.07 1.15 4.42 -5.19 -0.02 1.13 16 15 N -0.47 -7.75 2.07 -121.06 -0.25 -8.00 16 16 C 0.23 3.04 9.65 -16.84 -0.16 2.88 16 17 C -0.31 -3.85 5.42 -104.92 -0.57 -4.42 16 18 C 0.53 5.97 3.36 36.01 0.12 6.09 16 19 F -0.18 -1.93 17.30 2.25 0.04 -1.89 16 20 F -0.18 -2.02 16.66 2.25 0.04 -1.98 16 21 F -0.18 -2.11 16.28 2.25 0.04 -2.07 16 22 C 0.01 0.06 9.45 -39.51 -0.37 -0.31 16 23 C -0.23 -3.26 9.99 -39.38 -0.39 -3.66 16 24 C 0.52 9.58 7.40 -15.44 -0.11 9.46 16 25 O -0.52 -11.75 16.64 4.87 0.08 -11.67 16 26 H 0.04 0.55 6.59 -51.93 -0.34 0.20 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 2.43 5.76 -51.93 -0.30 2.14 16 30 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.12 2.20 6.67 -51.93 -0.35 1.86 16 33 H 0.11 1.42 6.41 -51.93 -0.33 1.08 16 34 H 0.17 1.81 7.38 -52.48 -0.39 1.42 16 35 H 0.14 1.24 7.79 -52.49 -0.41 0.83 16 36 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -33.59 324.74 -4.48 -38.07 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.28 Total: 2.32 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -1.46 Total: 13.65 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.11 Total: -41.02 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.17 Total: -27.14 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.11 Total: -5.94 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.59 -4.48 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.363 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds