Wall clock time and date at job start Tue Mar 31 2020 11:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47196 * 2 1 4 4 C 1.37096 * 120.00375 * 264.77064 * 3 2 1 5 5 H 1.07996 * 120.00640 * 138.85357 * 4 3 2 6 6 C 1.38956 * 119.99628 * 318.84864 * 4 3 2 7 7 N 1.31416 * 119.99932 * 341.83740 * 6 4 3 8 8 Si 1.86795 * 119.99980 * 161.83247 * 6 4 3 9 9 H 1.48501 * 109.46890 * 59.99997 * 8 6 4 10 10 H 1.48500 * 109.47353 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47294 * 300.00310 * 8 6 4 12 12 C 1.34781 * 119.99853 * 84.76799 * 3 2 1 13 13 O 1.21291 * 119.99976 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00029 * 359.97438 * 12 3 2 15 15 N 1.46500 * 109.47060 * 180.02562 * 14 12 3 16 16 C 1.35759 * 119.62709 * 90.00192 * 15 14 12 17 17 C 1.35347 * 120.70032 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.02495 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47345 * 94.97283 * 18 17 16 20 20 F 1.39902 * 109.47265 * 214.97377 * 18 17 16 21 21 F 1.39905 * 109.47127 * 334.97607 * 18 17 16 22 22 C 1.40195 * 119.95149 * 359.97118 * 17 16 15 23 23 C 1.36403 * 119.26377 * 0.02562 * 22 17 16 24 24 C 1.34664 * 119.62042 * 270.26295 * 15 14 12 25 25 O 1.22056 * 119.98922 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47022 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.47184 * 60.00082 * 1 2 3 28 28 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47022 * 239.99778 * 2 1 3 30 30 H 1.08997 * 109.46660 * 120.00424 * 2 1 3 31 31 H 0.97003 * 119.99357 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47055 * 59.99999 * 14 12 3 33 33 H 1.08999 * 109.46805 * 300.00315 * 14 12 3 34 34 H 1.08003 * 119.64710 * 0.02562 * 16 15 14 35 35 H 1.07999 * 120.36895 * 179.97438 * 22 17 16 36 36 H 1.07994 * 120.34178 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0744 3.0218 -1.3535 6 6 3.0373 1.2842 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0502 1.9005 -3.9238 9 1 3.6538 3.2565 -3.9697 10 1 3.8483 0.9740 -4.7662 11 1 1.6580 1.9607 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5465 3.1957 1.1624 14 6 1.7787 1.3814 2.4620 15 7 1.9998 2.3129 3.5709 16 6 0.9932 3.1314 3.9707 17 6 1.1738 4.0006 4.9923 18 6 0.0457 4.9018 5.4240 19 9 -0.6421 4.3105 6.4891 20 9 0.5642 6.1357 5.8314 21 9 -0.8324 5.0959 4.3523 22 6 2.4108 4.0613 5.6493 23 6 3.4210 3.2381 5.2462 24 6 3.2010 2.3513 4.1784 25 8 4.0976 1.6122 3.8047 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 4.1599 -0.3118 -2.5279 32 1 2.4000 0.4967 2.6008 33 1 0.7291 1.0881 2.4380 34 1 0.0381 3.0884 3.4683 35 1 2.5625 4.7527 6.4650 36 1 4.3810 3.2706 5.7397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:39 Heat of formation + Delta-G solvation = -194.681627 kcal Electronic energy + Delta-G solvation = -27262.351244 eV Core-core repulsion = 22718.040655 eV Total energy + Delta-G solvation = -4544.310589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.12049 -48.64782 -48.55687 -42.72687 -40.33713 -38.35912 -37.06122 -35.83801 -34.08795 -32.02474 -31.21999 -30.06351 -27.06822 -26.63716 -24.95784 -24.00875 -23.57409 -21.27848 -19.72542 -19.50077 -19.44918 -18.92592 -18.34553 -18.18383 -17.90198 -17.23708 -16.83372 -16.40811 -15.87210 -15.79064 -15.48035 -15.44643 -15.27218 -15.00268 -14.75701 -14.72491 -14.67248 -14.64053 -14.48397 -13.90281 -13.60438 -13.51649 -13.30145 -13.18853 -12.87343 -12.83974 -12.69224 -12.34070 -12.14859 -11.83184 -11.65900 -11.28779 -10.93547 -10.49624 -9.49525 -9.37038 -8.39166 -6.17410 -0.35688 0.36012 1.15357 1.36799 1.39757 1.50056 1.76660 1.86417 2.23988 2.35440 2.75454 2.93709 2.96891 2.99233 3.39304 3.47209 3.58493 3.72057 3.82040 3.86405 4.07638 4.18480 4.36655 4.59016 4.68873 4.76157 4.82177 4.87943 5.03949 5.21227 5.30843 5.41247 5.53348 5.75679 6.16454 6.43501 6.73981 7.09051 7.34107 7.91261 8.64162 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.003774 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.068802 B = 7417.935174 C = 7754.927444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.442 5.442 4 C -0.343 4.343 5 H 0.065 0.935 6 C 0.005 3.995 7 N -0.891 5.891 8 Si 0.984 3.016 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.257 1.257 12 C 0.434 3.566 13 O -0.620 6.620 14 C 0.080 3.920 15 N -0.471 5.471 16 C 0.215 3.785 17 C -0.305 4.305 18 C 0.541 3.459 19 F -0.172 7.172 20 F -0.174 7.174 21 F -0.180 7.180 22 C 0.029 3.971 23 C -0.248 4.248 24 C 0.504 3.496 25 O -0.586 6.586 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.274 0.726 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.200 0.800 35 H 0.181 0.819 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.454 2.477 14.410 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.161 5.161 4 C -0.472 4.472 5 H 0.083 0.917 6 C -0.198 4.198 7 N -0.527 5.527 8 Si 0.807 3.193 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.181 1.181 12 C 0.222 3.778 13 O -0.506 6.506 14 C -0.044 4.044 15 N -0.176 5.176 16 C 0.083 3.917 17 C -0.312 4.312 18 C 0.486 3.514 19 F -0.153 7.153 20 F -0.156 7.156 21 F -0.161 7.161 22 C 0.008 3.992 23 C -0.269 4.269 24 C 0.308 3.692 25 O -0.471 6.471 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.178 0.822 34 H 0.217 0.783 35 H 0.198 0.802 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.578 2.333 14.023 17.719 hybrid contribution 0.444 0.326 -1.107 1.237 sum -10.133 2.659 12.916 16.630 Atomic orbital electron populations 1.22125 0.94043 1.03038 1.01967 1.21719 0.94864 0.83034 1.03406 1.43691 1.55301 1.12994 1.04088 1.19327 1.37075 0.98355 0.92397 0.91683 1.26215 0.92916 0.96516 1.04177 1.70006 1.29047 1.18182 1.35498 0.85156 0.79153 0.77846 0.77156 1.20607 1.19822 1.18135 1.21149 0.82340 0.88059 0.86260 1.90533 1.52009 1.20782 1.87315 1.22086 1.06887 0.92475 0.82965 1.45228 1.12145 1.32241 1.28029 1.22141 0.93614 0.85150 0.90751 1.19317 0.97809 1.07295 1.06749 1.17439 0.80760 0.78428 0.74757 1.93240 1.81058 1.83666 1.57384 1.93200 1.86663 1.44985 1.90702 1.93203 1.71336 1.95359 1.56219 1.21319 0.88713 0.93529 0.95623 1.22080 1.03387 1.01222 1.00261 1.17923 0.80984 0.85537 0.84780 1.90963 1.42185 1.45755 1.68210 0.91668 0.93651 0.89352 0.90160 0.91606 0.91648 0.86317 0.82176 0.78339 0.80192 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 10.15 71.98 0.73 -3.71 16 2 C 0.09 3.67 5.41 86.38 0.47 4.14 16 3 N -0.44 -21.71 2.50 -635.55 -1.59 -23.30 16 4 C -0.34 -19.07 8.84 84.04 0.74 -18.33 16 5 H 0.07 3.83 7.82 -2.91 -0.02 3.81 16 6 C 0.00 0.26 4.95 84.93 0.42 0.68 16 7 N -0.89 -48.41 11.61 21.67 0.25 -48.16 16 8 Si 0.98 42.01 29.59 68.60 2.03 44.04 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 12 C 0.43 20.65 7.66 87.66 0.67 21.32 16 13 O -0.62 -35.11 16.34 -3.06 -0.05 -35.16 16 14 C 0.08 2.73 4.42 85.63 0.38 3.10 16 15 N -0.47 -15.33 2.07 -655.07 -1.36 -16.68 16 16 C 0.22 5.27 9.65 83.42 0.80 6.08 16 17 C -0.30 -6.63 5.42 -20.06 -0.11 -6.74 16 18 C 0.54 10.34 3.36 71.24 0.24 10.58 16 19 F -0.17 -3.08 17.30 44.97 0.78 -2.30 16 20 F -0.17 -3.40 16.66 44.97 0.75 -2.65 16 21 F -0.18 -3.69 16.28 44.97 0.73 -2.96 16 22 C 0.03 0.60 9.45 22.32 0.21 0.82 16 23 C -0.25 -6.83 9.99 22.40 0.22 -6.60 16 24 C 0.50 18.70 7.40 84.82 0.63 19.33 16 25 O -0.59 -27.48 16.64 -5.50 -0.09 -27.57 16 26 H 0.06 1.54 6.59 -2.39 -0.02 1.52 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 3.66 5.76 -2.39 -0.01 3.64 16 30 H 0.07 2.34 6.66 -2.39 -0.02 2.32 16 31 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.12 4.22 6.67 -2.39 -0.02 4.20 16 33 H 0.16 3.65 6.41 -2.39 -0.02 3.63 16 34 H 0.20 3.57 7.38 -2.91 -0.02 3.55 16 35 H 0.18 2.36 7.79 -2.91 -0.02 2.33 16 36 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -78.05 324.74 8.00 -70.04 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.14 Total: 14.04 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 5.41 Total: 30.68 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.70 Total: -88.15 kcal Atomic # 8 Polarization: -62.59 SS G_CDS: -0.14 Total: -62.73 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 2.26 Total: -7.92 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -78.05 8.00 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.638 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds