Wall clock time and date at job start Tue Mar 31 2020 12:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47197 * 2 1 4 4 C 1.50701 * 109.46673 * 119.99539 * 2 1 3 5 5 H 1.08006 * 119.99679 * 120.00177 * 4 2 1 6 6 C 1.37872 * 120.00348 * 300.00085 * 4 2 1 7 7 N 1.31513 * 119.99810 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47196 * 89.99457 * 8 6 4 10 10 H 1.48504 * 109.46923 * 209.99821 * 8 6 4 11 11 H 1.48500 * 109.46896 * 329.99664 * 8 6 4 12 12 N 1.46502 * 109.46885 * 239.99608 * 2 1 3 13 13 C 1.46497 * 119.99753 * 300.00030 * 12 2 1 14 14 C 1.34777 * 119.99762 * 120.00113 * 12 2 1 15 15 O 1.21609 * 120.00216 * 2.83997 * 14 12 2 16 16 C 1.47386 * 119.99810 * 182.83441 * 14 12 2 17 17 N 1.31577 * 126.82644 * 355.23154 * 16 14 12 18 18 N 1.28377 * 111.97125 * 180.15573 * 17 16 14 19 19 H 0.96993 * 124.37907 * 179.80326 * 18 17 16 20 20 C 1.37057 * 111.25165 * 359.54448 * 18 17 16 21 21 C 1.39118 * 134.72490 * 180.29064 * 20 18 17 22 22 C 1.36684 * 119.78720 * 180.02562 * 21 20 18 23 23 C 1.38898 * 120.88995 * 359.91292 * 22 21 20 24 24 N 1.48025 * 119.73802 * 180.02562 * 23 22 21 25 25 O 1.21796 * 119.99975 * 180.02562 * 24 23 22 26 26 O 1.21797 * 119.99929 * 0.02562 * 24 23 22 27 27 C 1.36721 * 120.52543 * 0.06544 * 23 22 21 28 28 C 1.39188 * 119.51069 * 359.97438 * 27 23 22 29 29 H 1.08997 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47176 * 300.00764 * 1 2 3 31 31 H 1.09009 * 109.46929 * 60.00254 * 1 2 3 32 32 H 0.97004 * 119.99841 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47289 * 263.91213 * 13 12 2 34 34 H 1.08998 * 109.47427 * 23.91901 * 13 12 2 35 35 H 1.09003 * 109.46943 * 143.91427 * 13 12 2 36 36 H 1.08005 * 120.11201 * 359.95512 * 21 20 18 37 37 H 1.08000 * 119.55521 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.24125 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3223 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3442 -0.9487 5.1123 11 1 2.4877 -2.5652 3.7123 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4278 14 6 2.7932 -0.0357 -2.0834 15 8 3.1297 1.1124 -1.8656 16 6 3.2328 -0.7111 -3.3174 17 7 3.0236 -1.9679 -3.6460 18 7 3.5354 -2.2575 -4.7872 19 1 3.4901 -3.1334 -5.2013 20 6 4.1491 -1.1676 -5.3475 21 6 4.8338 -0.9328 -6.5355 22 6 5.3378 0.3111 -6.7943 23 6 5.1749 1.3496 -5.8864 24 7 5.7307 2.6869 -6.1929 25 8 5.5910 3.6008 -5.4000 26 8 6.3278 2.8732 -7.2379 27 6 4.5058 1.1463 -4.7115 28 6 3.9853 -0.1131 -4.4280 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.7094 1.1620 3.4843 33 1 2.4680 -2.7352 -1.0672 34 1 0.7438 -2.3287 -0.8938 35 1 1.5178 -2.2595 -2.4951 36 1 4.9678 -1.7310 -7.2506 37 1 5.8691 0.4892 -7.7175 38 1 4.3821 1.9570 -4.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078421646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:30 Heat of formation + Delta-G solvation = 67.563663 kcal Electronic energy + Delta-G solvation = -26109.311127 eV Core-core repulsion = 22150.521838 eV Total energy + Delta-G solvation = -3958.789289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.04802 -42.08895 -39.01737 -38.31857 -36.57434 -35.49761 -33.34410 -32.69632 -31.43893 -30.70377 -29.21026 -26.75920 -26.23210 -25.28189 -24.18742 -23.72411 -22.60266 -20.87775 -19.49241 -19.17058 -18.65438 -18.12553 -17.55329 -17.30377 -16.52699 -16.17639 -15.90689 -15.46700 -15.13311 -14.45507 -14.41897 -14.33040 -13.93367 -13.11358 -12.92563 -12.72863 -12.51707 -12.26068 -11.85779 -11.58844 -11.55308 -11.25421 -11.14533 -11.11583 -10.91983 -10.87083 -10.72148 -10.61184 -10.30304 -10.22038 -9.57154 -9.46772 -9.22660 -8.77725 -8.48052 -7.73234 -6.11949 -4.20215 -0.28085 0.32445 1.19191 1.31772 1.63500 2.22505 2.91280 3.25124 3.31459 3.32633 3.44955 3.65883 3.79266 4.01853 4.24077 4.34275 4.41370 4.48781 4.70123 5.04931 5.19907 5.26081 5.33921 5.46222 5.64120 5.80871 5.89007 6.09061 6.31028 6.33541 6.49044 6.70368 6.75585 6.96066 7.26708 7.37500 7.44508 7.61803 7.64752 7.93363 8.10017 8.35683 8.67723 8.86945 9.46179 10.93517 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.003338 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.185098 B = 8387.466926 C = 9268.389064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.067 0.933 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.568 5.568 13 C 0.081 3.919 14 C 0.578 3.422 15 O -0.534 6.534 16 C 0.057 3.943 17 N -0.201 5.201 18 N -0.415 5.415 19 H 0.451 0.549 20 C 0.106 3.894 21 C -0.113 4.113 22 C -0.038 4.038 23 C -0.073 4.073 24 N 0.034 4.966 25 O -0.156 6.156 26 O -0.168 6.168 27 C 0.048 3.952 28 C -0.124 4.124 29 H 0.032 0.968 30 H 0.096 0.904 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 -8.353 -18.997 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.085 0.915 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.297 5.297 13 C -0.063 4.063 14 C 0.361 3.639 15 O -0.410 6.410 16 C -0.115 4.115 17 N -0.028 5.028 18 N -0.132 5.132 19 H 0.297 0.703 20 C -0.011 4.011 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.157 4.157 24 N 0.553 4.447 25 O -0.372 6.372 26 O -0.382 6.382 27 C 0.027 3.973 28 C -0.133 4.133 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.868 -9.267 -18.135 20.730 hybrid contribution 0.767 -0.190 0.267 0.834 sum 4.635 -9.458 -17.868 20.741 Atomic orbital electron populations 1.22119 0.97799 0.99603 1.01106 1.19106 0.91100 0.94626 0.79431 0.91474 1.21275 1.32087 1.13135 0.90083 0.92167 1.24878 0.94856 0.94969 0.98964 1.69870 1.36167 1.22498 1.23910 0.86472 0.78708 0.79823 0.82256 1.20535 1.21077 1.19938 1.48216 1.46853 1.12146 1.22518 1.21906 1.01243 0.82101 1.01082 1.16741 0.80384 0.85682 0.81059 1.90804 1.57181 1.16846 1.76198 1.23528 1.01588 0.89263 0.97158 1.73479 1.13782 1.16855 0.98705 1.43419 1.43652 1.11746 1.14378 0.70335 1.19475 0.97285 0.88530 0.95853 1.19652 1.01037 0.97560 0.95245 1.20396 0.96672 0.90067 0.98854 1.20546 1.10700 0.84419 1.00078 1.43469 0.98580 1.02684 0.99950 1.94603 1.62811 1.35181 1.44634 1.94501 1.40735 1.89068 1.13903 1.20276 0.86731 0.97084 0.93233 1.19158 1.05149 0.93538 0.95457 0.94916 0.88506 0.96804 0.92568 0.93145 0.90645 0.90886 0.83147 0.82337 0.81052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.96 37.16 0.33 -3.09 16 2 C 0.26 6.38 2.63 -69.08 -0.18 6.20 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -13.95 8.37 -34.44 -0.29 -14.24 16 5 H 0.06 1.58 7.65 -52.48 -0.40 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.57 -11.90 2.75 -176.55 -0.49 -12.39 16 13 C 0.08 1.36 8.83 59.85 0.53 1.89 16 14 C 0.58 11.85 7.67 -12.54 -0.10 11.75 16 15 O -0.53 -12.61 15.76 5.27 0.08 -12.53 16 16 C 0.06 0.91 7.01 -80.76 -0.57 0.34 16 17 N -0.20 -2.55 8.64 34.46 0.30 -2.25 16 18 N -0.42 -3.59 6.85 32.34 0.22 -3.37 16 19 H 0.45 1.86 8.96 -190.50 -1.71 0.16 16 20 C 0.11 1.03 7.38 -84.21 -0.62 0.41 16 21 C -0.11 -0.78 10.03 -39.82 -0.40 -1.18 16 22 C -0.04 -0.33 9.47 -39.90 -0.38 -0.71 16 23 C -0.07 -0.89 6.82 -80.25 -0.55 -1.43 16 24 N 0.03 0.49 4.45 33.82 0.15 0.64 16 25 O -0.16 -2.48 18.41 -29.46 -0.54 -3.02 16 26 O -0.17 -2.32 18.42 -29.46 -0.54 -2.87 16 27 C 0.05 0.67 9.37 -39.78 -0.37 0.29 16 28 C -0.12 -1.71 6.34 -105.05 -0.67 -2.37 16 29 H 0.03 0.69 6.67 -51.93 -0.35 0.35 16 30 H 0.10 2.46 6.07 -51.92 -0.32 2.15 16 31 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.27 6.44 -51.93 -0.33 0.94 16 35 H 0.07 1.05 5.38 -51.93 -0.28 0.77 16 36 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 37 H 0.16 1.01 7.58 -52.49 -0.40 0.61 16 38 H 0.17 2.64 7.18 -52.49 -0.38 2.26 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -32.09 331.11 -8.49 -40.58 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.92 Total: -1.09 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.35 Total: -0.47 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.81 Total: -41.30 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.00 Total: -18.42 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.09 -8.49 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078421646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.142 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds