Wall clock time and date at job start Tue Mar 31 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35494 * 116.99640 * 2 1 4 4 C 1.39173 * 119.52467 * 179.97438 * 3 2 1 5 5 C 1.37957 * 119.26331 * 179.97438 * 4 3 2 6 6 C 1.40284 * 118.35980 * 0.02562 * 5 4 3 7 7 C 1.47611 * 120.50196 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99839 * 311.26916 * 7 6 5 9 9 N 1.34773 * 120.00145 * 131.26816 * 7 6 5 10 10 C 1.46507 * 120.00109 * 186.18105 * 9 7 6 11 11 C 1.50703 * 109.46878 * 89.99946 * 10 9 7 12 12 H 1.08001 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00015 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99935 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47047 * 90.00062 * 15 13 11 17 17 H 1.48498 * 109.47087 * 210.00138 * 15 13 11 18 18 H 1.48499 * 109.47182 * 330.00280 * 15 13 11 19 19 C 1.46500 * 120.00058 * 6.18094 * 9 7 6 20 20 C 1.52994 * 109.47408 * 105.34098 * 19 9 7 21 21 F 1.39905 * 109.47175 * 67.31397 * 20 19 9 22 22 F 1.39897 * 109.47710 * 187.31789 * 20 19 9 23 23 F 1.39904 * 109.47122 * 307.31667 * 20 19 9 24 24 C 1.39530 * 119.00172 * 359.97438 * 6 5 4 25 25 N 1.31665 * 120.62611 * 0.02562 * 24 6 5 26 26 H 1.08992 * 109.47886 * 300.00205 * 1 2 3 27 27 H 1.09009 * 109.46911 * 60.00860 * 1 2 3 28 28 H 1.09009 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.36909 * 0.27526 * 4 3 2 30 30 H 1.08004 * 120.81994 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46871 * 209.99918 * 10 9 7 32 32 H 1.08994 * 109.46710 * 330.00009 * 10 9 7 33 33 H 0.97002 * 119.99996 * 179.97438 * 14 13 11 34 34 H 1.09008 * 109.46877 * 225.34158 * 19 9 7 35 35 H 1.08996 * 109.47196 * 345.33725 * 19 9 7 36 36 H 1.07998 * 119.68525 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2073 0.0000 4 6 3.4344 1.2687 0.0005 5 6 4.0550 2.5008 0.0000 6 6 3.2523 3.6513 -0.0005 7 6 3.8666 4.9935 -0.0006 8 8 4.7508 5.2573 0.7911 9 7 3.4474 5.9264 -0.8782 10 6 4.1457 7.2111 -0.9710 11 6 5.2499 7.1099 -1.9916 12 1 5.4153 6.1816 -2.5181 13 6 6.0496 8.2023 -2.2525 14 7 7.0129 8.1143 -3.1435 15 14 5.7639 9.8079 -1.3413 16 1 6.5759 9.8227 -0.0981 17 1 6.1635 10.9462 -2.2071 18 1 4.3253 9.9310 -0.9944 19 6 2.2935 5.6561 -1.7393 20 6 1.0816 6.4378 -1.2285 21 9 1.3028 7.8081 -1.4038 22 9 -0.0569 6.0538 -1.9451 23 9 0.8906 6.1664 0.1306 24 6 1.8644 3.5077 -0.0010 25 7 1.3138 2.3118 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 4.0210 0.3619 -0.0035 30 1 5.1323 2.5777 0.0000 31 1 3.4415 7.9862 -1.2731 32 1 4.5706 7.4645 0.0001 33 1 7.5753 8.8830 -3.3273 34 1 2.5213 5.9648 -2.7596 35 1 2.0706 4.5892 -1.7238 36 1 1.2359 4.3860 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080827192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:22 Heat of formation + Delta-G solvation = -168.094644 kcal Electronic energy + Delta-G solvation = -27643.763851 eV Core-core repulsion = 23100.606159 eV Total energy + Delta-G solvation = -4543.157691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.11300 -47.65619 -47.49801 -40.97020 -39.40510 -37.71558 -35.61986 -32.84830 -32.67528 -31.21074 -29.65956 -27.99479 -27.26094 -24.36693 -23.67530 -23.29501 -22.19279 -19.71998 -18.71486 -18.53801 -18.44558 -17.84787 -17.22265 -16.97781 -16.61039 -16.19569 -15.60612 -15.21844 -14.66780 -14.51375 -14.39302 -14.22382 -14.19171 -13.95400 -13.72311 -13.64525 -13.61711 -13.36324 -13.08166 -12.77628 -12.51869 -12.30325 -12.10168 -12.02481 -11.69004 -11.34771 -11.13114 -10.61235 -10.30771 -10.09946 -10.04113 -9.68508 -9.40208 -8.68884 -8.63715 -8.20943 -6.18944 -4.20084 0.75390 1.05683 2.61932 2.85491 3.01047 3.18837 3.26808 3.32878 3.34709 3.61210 3.88935 4.01479 4.09831 4.26276 4.32158 4.61419 4.72444 4.91165 4.96309 4.99504 5.09947 5.10492 5.15098 5.39800 5.43159 5.47612 5.66877 5.97312 6.16682 6.47757 6.75522 6.90949 6.97194 7.44747 7.57452 7.71826 8.29707 8.50908 8.81697 9.39807 10.93632 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.004703 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.361914 B = 5951.625666 C = 7064.882401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.329 3.671 4 C -0.190 4.190 5 C 0.011 3.989 6 C -0.213 4.213 7 C 0.570 3.430 8 O -0.511 6.511 9 N -0.584 5.584 10 C 0.205 3.795 11 C -0.538 4.538 12 H 0.078 0.922 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.871 3.129 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.262 1.262 19 C 0.060 3.940 20 C 0.430 3.570 21 F -0.170 7.170 22 F -0.181 7.181 23 F -0.179 7.179 24 C 0.146 3.854 25 N -0.538 5.538 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.197 -12.020 3.694 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.150 3.850 4 C -0.211 4.211 5 C -0.015 4.015 6 C -0.218 4.218 7 C 0.357 3.643 8 O -0.386 6.386 9 N -0.314 5.314 10 C 0.086 3.914 11 C -0.576 4.576 12 H 0.096 0.904 13 C -0.125 4.125 14 N -0.530 5.530 15 Si 0.697 3.303 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.067 4.067 20 C 0.374 3.626 21 F -0.152 7.152 22 F -0.163 7.163 23 F -0.160 7.160 24 C -0.011 4.011 25 N -0.261 5.261 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.360 -12.092 4.057 19.206 hybrid contribution 0.334 1.197 0.367 1.296 sum -14.026 -10.895 4.424 18.303 Atomic orbital electron populations 1.22900 0.77037 1.02975 1.02766 1.86203 1.23120 1.24511 1.87370 1.20073 0.89515 0.84735 0.90640 1.21019 0.91789 0.99503 1.08770 1.21492 1.01170 0.89576 0.89263 1.20992 0.95268 0.95544 1.10045 1.17844 0.82497 0.83297 0.80677 1.90799 1.30197 1.79829 1.37752 1.47738 1.28630 1.18673 1.36403 1.20036 0.93258 0.78868 0.99222 1.21221 1.14270 1.00178 1.21914 0.90433 1.24798 0.94436 0.98639 0.94670 1.69878 1.19054 1.31142 1.32896 0.86918 0.79556 0.83465 0.80323 1.19721 1.20845 1.18693 1.22884 0.83627 1.01425 0.98778 1.21572 0.85766 0.79864 0.75431 1.93219 1.94377 1.32646 1.94913 1.93186 1.54103 1.90992 1.77994 1.93014 1.95905 1.92456 1.34661 1.23365 0.91997 0.94670 0.91026 1.67362 1.40346 0.98468 1.19957 0.92126 0.92034 0.88600 0.83340 0.82890 0.93695 0.93563 0.92347 0.84974 0.86226 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.37 101.05 1.05 1.37 16 2 O -0.31 -3.44 10.46 -18.18 -0.19 -3.63 16 3 C 0.33 4.18 7.49 -16.96 -0.13 4.05 16 4 C -0.19 -2.25 10.02 -39.34 -0.39 -2.65 16 5 C 0.01 0.14 9.87 -38.92 -0.38 -0.24 16 6 C -0.21 -3.32 5.05 -104.82 -0.53 -3.85 16 7 C 0.57 11.15 7.25 -12.44 -0.09 11.06 16 8 O -0.51 -11.89 16.59 5.30 0.09 -11.80 16 9 N -0.58 -11.30 2.29 -176.26 -0.40 -11.71 16 10 C 0.21 4.76 4.18 -5.19 -0.02 4.73 16 11 C -0.54 -14.55 9.94 -34.44 -0.34 -14.89 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 14 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 15 Si 0.87 20.85 27.47 -169.99 -4.67 16.19 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 19 C 0.06 0.90 5.11 -4.05 -0.02 0.88 16 20 C 0.43 6.21 2.96 37.15 0.11 6.32 16 21 F -0.17 -2.80 15.27 2.25 0.03 -2.76 16 22 F -0.18 -2.33 17.32 2.25 0.04 -2.29 16 23 F -0.18 -2.63 14.41 2.25 0.03 -2.60 16 24 C 0.15 2.06 8.53 -17.14 -0.15 1.91 16 25 N -0.54 -7.25 9.18 -12.96 -0.12 -7.37 16 26 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.06 0.51 8.10 -51.92 -0.42 0.09 16 28 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.05 1.01 5.15 -51.93 -0.27 0.74 16 32 H 0.05 1.15 6.77 -51.93 -0.35 0.80 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 35 H 0.12 1.53 4.66 -51.93 -0.24 1.29 16 36 H 0.17 2.32 3.52 -52.49 -0.18 2.14 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -32.17 319.00 -3.77 -35.94 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.17 Total: 0.10 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -1.00 Total: 10.76 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.25 Total: -44.73 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.10 Total: -15.42 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.11 Total: -7.65 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.17 -3.77 -35.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080827192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.151 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds