Wall clock time and date at job start Tue Mar 31 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35494 * 116.99640 * 2 1 4 4 C 1.39173 * 119.52467 * 179.97438 * 3 2 1 5 5 C 1.37957 * 119.26331 * 179.97438 * 4 3 2 6 6 C 1.40284 * 118.35980 * 0.02562 * 5 4 3 7 7 C 1.47611 * 120.50196 * 179.97438 * 6 5 4 8 8 O 1.21578 * 119.99839 * 311.26916 * 7 6 5 9 9 N 1.34773 * 120.00145 * 131.26816 * 7 6 5 10 10 C 1.46507 * 120.00109 * 186.18105 * 9 7 6 11 11 C 1.50703 * 109.46878 * 89.99946 * 10 9 7 12 12 H 1.08001 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00015 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99935 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47047 * 90.00062 * 15 13 11 17 17 H 1.48498 * 109.47087 * 210.00138 * 15 13 11 18 18 H 1.48499 * 109.47182 * 330.00280 * 15 13 11 19 19 C 1.46500 * 120.00058 * 6.18094 * 9 7 6 20 20 C 1.52994 * 109.47408 * 105.34098 * 19 9 7 21 21 F 1.39905 * 109.47175 * 67.31397 * 20 19 9 22 22 F 1.39897 * 109.47710 * 187.31789 * 20 19 9 23 23 F 1.39904 * 109.47122 * 307.31667 * 20 19 9 24 24 C 1.39530 * 119.00172 * 359.97438 * 6 5 4 25 25 N 1.31665 * 120.62611 * 0.02562 * 24 6 5 26 26 H 1.08992 * 109.47886 * 300.00205 * 1 2 3 27 27 H 1.09009 * 109.46911 * 60.00860 * 1 2 3 28 28 H 1.09009 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.36909 * 0.27526 * 4 3 2 30 30 H 1.08004 * 120.81994 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46871 * 209.99918 * 10 9 7 32 32 H 1.08994 * 109.46710 * 330.00009 * 10 9 7 33 33 H 0.97002 * 119.99996 * 179.97438 * 14 13 11 34 34 H 1.09008 * 109.46877 * 225.34158 * 19 9 7 35 35 H 1.08996 * 109.47196 * 345.33725 * 19 9 7 36 36 H 1.07998 * 119.68525 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2073 0.0000 4 6 3.4344 1.2687 0.0005 5 6 4.0550 2.5008 0.0000 6 6 3.2523 3.6513 -0.0005 7 6 3.8666 4.9935 -0.0006 8 8 4.7508 5.2573 0.7911 9 7 3.4474 5.9264 -0.8782 10 6 4.1457 7.2111 -0.9710 11 6 5.2499 7.1099 -1.9916 12 1 5.4153 6.1816 -2.5181 13 6 6.0496 8.2023 -2.2525 14 7 7.0129 8.1143 -3.1435 15 14 5.7639 9.8079 -1.3413 16 1 6.5759 9.8227 -0.0981 17 1 6.1635 10.9462 -2.2071 18 1 4.3253 9.9310 -0.9944 19 6 2.2935 5.6561 -1.7393 20 6 1.0816 6.4378 -1.2285 21 9 1.3028 7.8081 -1.4038 22 9 -0.0569 6.0538 -1.9451 23 9 0.8906 6.1664 0.1306 24 6 1.8644 3.5077 -0.0010 25 7 1.3138 2.3118 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 4.0210 0.3619 -0.0035 30 1 5.1323 2.5777 0.0000 31 1 3.4415 7.9862 -1.2731 32 1 4.5706 7.4645 0.0001 33 1 7.5753 8.8830 -3.3273 34 1 2.5213 5.9648 -2.7596 35 1 2.0706 4.5892 -1.7238 36 1 1.2359 4.3860 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080827192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:21 Heat of formation + Delta-G solvation = -190.859899 kcal Electronic energy + Delta-G solvation = -27644.751026 eV Core-core repulsion = 23100.606159 eV Total energy + Delta-G solvation = -4544.144867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.29549 -48.83089 -48.68888 -42.09089 -40.73393 -38.76364 -37.20164 -34.86992 -33.74728 -32.50701 -31.11304 -29.44412 -28.27047 -25.67476 -24.97183 -24.45990 -23.70768 -21.15641 -19.83086 -19.76741 -19.48338 -19.34318 -18.74147 -18.33159 -18.00933 -17.17828 -17.04037 -16.34919 -16.17505 -16.06783 -15.65606 -15.37035 -15.33255 -15.08702 -14.96817 -14.84431 -14.77252 -14.61945 -14.47150 -14.24076 -13.94075 -13.69627 -13.46516 -13.35963 -12.98166 -12.76064 -12.48936 -12.23092 -12.09762 -11.76450 -11.34407 -11.13677 -10.82874 -10.75024 -9.91342 -9.66200 -8.34423 -6.40155 -0.35532 0.01060 1.31937 1.34720 1.37535 1.45477 1.58900 1.88380 1.98943 2.30809 2.50495 2.67247 2.84739 2.93917 3.02567 3.13480 3.38120 3.62871 3.80367 3.92019 3.98358 4.23674 4.45520 4.46803 4.50668 4.57645 4.68574 4.80519 4.83253 4.98511 5.15407 5.21706 5.40170 6.04792 6.14437 6.20859 6.53310 6.61542 6.94240 7.24335 8.81391 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.004703 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.361914 B = 5951.625666 C = 7064.882401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C 0.330 3.670 4 C -0.178 4.178 5 C 0.006 3.994 6 C -0.231 4.231 7 C 0.569 3.431 8 O -0.560 6.560 9 N -0.590 5.590 10 C 0.216 3.784 11 C -0.538 4.538 12 H 0.042 0.958 13 C 0.022 3.978 14 N -0.937 5.937 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.275 1.275 18 H -0.241 1.241 19 C 0.058 3.942 20 C 0.438 3.562 21 F -0.181 7.181 22 F -0.167 7.167 23 F -0.179 7.179 24 C 0.154 3.846 25 N -0.540 5.540 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.179 0.821 30 H 0.155 0.845 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.269 0.731 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.262 -13.065 4.103 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.151 3.849 4 C -0.198 4.198 5 C -0.019 4.019 6 C -0.237 4.237 7 C 0.358 3.642 8 O -0.438 6.438 9 N -0.320 5.320 10 C 0.095 3.905 11 C -0.577 4.577 12 H 0.061 0.939 13 C -0.177 4.177 14 N -0.577 5.577 15 Si 0.756 3.244 16 H -0.199 1.199 17 H -0.200 1.200 18 H -0.164 1.164 19 C -0.068 4.068 20 C 0.382 3.618 21 F -0.163 7.163 22 F -0.148 7.148 23 F -0.160 7.160 24 C -0.003 4.003 25 N -0.264 5.264 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.196 0.804 30 H 0.172 0.828 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.485 -13.171 4.448 21.565 hybrid contribution 0.908 1.312 0.207 1.609 sum -15.577 -11.860 4.655 20.124 Atomic orbital electron populations 1.23184 0.75333 1.05103 1.02686 1.86223 1.24779 1.23458 1.86768 1.20341 0.90009 0.85034 0.89541 1.21254 0.91802 0.99696 1.07035 1.21592 1.01324 0.89765 0.89257 1.20705 0.96113 0.93755 1.13091 1.18425 0.81720 0.84435 0.79623 1.90758 1.32496 1.80832 1.39691 1.47656 1.29603 1.17629 1.37103 1.19674 0.92675 0.81250 0.96933 1.21429 1.15397 0.98747 1.22091 0.93946 1.25658 0.94140 1.02423 0.95472 1.70010 1.20417 1.32443 1.34805 0.85933 0.80616 0.79100 0.78797 1.19932 1.19984 1.16404 1.23101 0.82325 1.03083 0.98261 1.21290 0.85871 0.79129 0.75466 1.93195 1.94495 1.33594 1.94986 1.93218 1.53199 1.90778 1.77652 1.93021 1.95901 1.92396 1.34716 1.23296 0.91119 0.95183 0.90709 1.67407 1.40356 0.98392 1.20277 0.92278 0.92002 0.85493 0.80384 0.82773 0.92230 0.95189 0.92143 0.84274 0.83910 0.80811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.37 113.37 1.18 1.60 16 2 O -0.31 -5.94 10.46 -87.95 -0.92 -6.86 16 3 C 0.33 7.51 7.49 84.83 0.64 8.15 16 4 C -0.18 -3.78 10.02 22.43 0.22 -3.55 16 5 C 0.01 0.16 9.87 22.70 0.22 0.38 16 6 C -0.23 -7.08 5.05 -19.99 -0.10 -7.18 16 7 C 0.57 22.54 7.25 86.72 0.63 23.17 16 8 O -0.56 -26.84 16.59 -3.96 -0.07 -26.91 16 9 N -0.59 -22.89 2.29 -829.85 -1.90 -24.80 16 10 C 0.22 10.03 4.18 85.63 0.36 10.38 16 11 C -0.54 -29.84 9.94 25.60 0.25 -29.58 16 12 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 13 C 0.02 1.27 5.47 84.65 0.46 1.73 16 14 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 15 Si 0.93 43.01 27.47 68.60 1.88 44.89 16 16 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 19 C 0.06 1.68 5.11 86.38 0.44 2.12 16 20 C 0.44 11.94 2.96 71.98 0.21 12.15 16 21 F -0.18 -5.67 15.27 44.97 0.69 -4.98 16 22 F -0.17 -3.91 17.32 44.97 0.78 -3.14 16 23 F -0.18 -4.98 14.41 44.97 0.65 -4.33 16 24 C 0.15 4.09 8.53 85.03 0.73 4.82 16 25 N -0.54 -13.36 9.18 -307.81 -2.82 -16.19 16 26 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 27 H 0.06 0.85 8.10 -2.38 -0.02 0.84 16 28 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.06 2.60 5.15 -2.39 -0.01 2.59 16 32 H 0.03 1.50 6.77 -2.39 -0.02 1.49 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.14 3.83 8.14 -2.38 -0.02 3.82 16 35 H 0.14 3.46 4.66 -2.39 -0.01 3.44 16 36 H 0.18 4.45 3.52 -2.91 -0.01 4.44 16 Total: -1.00 -70.61 319.00 4.92 -65.69 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.10 Total: 8.99 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 5.24 Total: 24.18 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -4.43 Total: -97.54 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.99 Total: -33.76 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 2.11 Total: -12.45 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -70.61 4.92 -65.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080827192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.170 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds