Wall clock time and date at job start Tue Mar 31 2020 11:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46919 * 2 1 4 4 C 1.36817 * 120.00490 * 262.12873 * 3 2 1 5 5 H 1.07997 * 120.00101 * 197.86196 * 4 3 2 6 6 C 1.39083 * 119.99831 * 17.85945 * 4 3 2 7 7 N 1.31343 * 120.00099 * 20.35939 * 6 4 3 8 8 Si 1.86801 * 119.99844 * 200.36479 * 6 4 3 9 9 H 1.48503 * 109.46865 * 89.99866 * 8 6 4 10 10 H 1.48500 * 109.46938 * 209.99679 * 8 6 4 11 11 H 1.48494 * 109.46961 * 329.99977 * 8 6 4 12 12 C 1.34779 * 119.99473 * 82.12717 * 3 2 1 13 13 O 1.21608 * 119.99738 * 182.04649 * 12 3 2 14 14 C 1.47684 * 120.00342 * 2.05171 * 12 3 2 15 15 N 1.32911 * 119.78967 * 353.71112 * 14 12 3 16 16 C 1.31389 * 121.68729 * 180.02562 * 15 14 12 17 17 C 1.38762 * 121.07095 * 359.97438 * 16 15 14 18 18 C 1.38342 * 119.45534 * 0.25642 * 17 16 15 19 19 C 1.39291 * 118.45095 * 359.50904 * 18 17 16 20 20 O 1.35657 * 120.54149 * 180.23993 * 19 18 17 21 21 C 1.42903 * 117.00124 * 0.24893 * 20 19 18 22 22 C 1.52997 * 109.47149 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.47021 * 60.00479 * 22 21 20 24 24 F 1.39908 * 109.47194 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.47591 * 300.00166 * 22 21 20 26 26 H 1.09005 * 109.47138 * 59.99625 * 1 2 3 27 27 H 1.08996 * 109.46696 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47126 * 299.99847 * 1 2 3 29 29 H 1.08998 * 109.47250 * 240.00636 * 2 1 3 30 30 H 1.08994 * 109.47207 * 119.99855 * 2 1 3 31 31 H 0.96990 * 120.00221 * 179.97438 * 7 6 4 32 32 H 1.07998 * 119.46539 * 180.02562 * 16 15 14 33 33 H 1.07994 * 120.26881 * 179.97438 * 17 16 15 34 34 H 1.08003 * 120.77089 * 179.74654 * 18 17 16 35 35 H 1.08997 * 109.47329 * 300.00392 * 21 20 19 36 36 H 1.09008 * 109.46734 * 60.00404 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3994 1.9723 -1.1736 5 1 3.0171 2.8579 -1.1566 6 6 1.9911 1.4324 -2.3887 7 7 0.9502 0.6328 -2.4354 8 14 2.9235 1.8443 -3.9541 9 1 4.0079 0.8510 -4.1603 10 1 1.9915 1.8068 -5.1096 11 1 3.5121 3.2026 -3.8367 12 6 2.0922 2.0698 1.1563 13 8 2.4621 3.2283 1.1515 14 6 1.7239 1.4175 2.4290 15 7 1.2021 0.1952 2.4178 16 6 0.8608 -0.4198 3.5276 17 6 1.0329 0.1860 4.7641 18 6 1.5678 1.4602 4.8288 19 6 1.9269 2.0903 3.6396 20 8 2.4597 3.3378 3.6540 21 6 2.6334 3.9543 4.9314 22 6 3.2425 5.3458 4.7476 23 9 2.3880 6.1290 3.9642 24 9 3.4132 5.9491 5.9983 25 9 4.4837 5.2314 4.1123 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.6653 0.2566 -3.2827 32 1 0.4401 -1.4132 3.4767 33 1 0.7474 -0.3312 5.6681 34 1 1.7072 1.9533 5.7795 35 1 1.6665 4.0431 5.4266 36 1 3.2996 3.3443 5.5417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084087861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:25 Heat of formation + Delta-G solvation = -145.174699 kcal Electronic energy + Delta-G solvation = -27551.099842 eV Core-core repulsion = 23008.936034 eV Total energy + Delta-G solvation = -4542.163808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.10323 -47.68508 -47.49545 -40.60541 -38.47795 -37.66333 -34.94496 -32.46498 -31.36661 -31.12196 -29.25669 -29.18909 -25.47830 -24.32250 -23.29180 -22.45172 -21.91530 -19.91969 -18.88017 -18.61772 -17.85871 -17.57170 -17.05357 -16.46537 -15.98978 -15.88659 -15.05580 -14.57696 -14.46178 -14.40843 -14.11661 -14.02001 -14.00213 -13.90889 -13.68371 -13.67941 -13.19992 -12.95223 -12.71586 -12.32782 -12.04419 -11.77451 -11.64188 -11.48277 -11.10661 -11.01637 -10.66095 -10.35381 -10.11995 -9.97688 -9.39502 -9.05373 -8.76429 -8.25097 -8.19435 -7.57587 -6.34959 -3.79012 1.07231 1.43557 2.24345 3.09589 3.15251 3.24588 3.30234 3.62318 3.65845 3.88552 4.06688 4.31456 4.47210 4.50588 4.69603 4.73965 4.80705 4.85328 5.08108 5.18417 5.36540 5.41351 5.87317 6.12367 6.12772 6.46631 6.67741 6.91118 6.99512 7.15224 7.27689 7.42854 7.49137 7.99750 8.09852 8.20054 8.56754 9.19083 9.42194 10.07115 10.58585 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.004745 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.560174 B = 5899.248654 C = 7578.265824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.124 3.876 3 N -0.403 5.403 4 C -0.295 4.295 5 H 0.106 0.894 6 C 0.032 3.968 7 N -0.847 5.847 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.467 3.533 13 O -0.576 6.576 14 C 0.096 3.904 15 N -0.411 5.411 16 C 0.055 3.945 17 C -0.141 4.141 18 C -0.177 4.177 19 C 0.109 3.891 20 O -0.250 6.250 21 C 0.005 3.995 22 C 0.467 3.533 23 F -0.168 7.168 24 F -0.179 7.179 25 F -0.169 7.169 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.270 0.730 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -1.164 15.735 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 N -0.118 5.118 4 C -0.424 4.424 5 H 0.123 0.877 6 C -0.174 4.174 7 N -0.485 5.485 8 Si 0.752 3.248 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.192 1.192 12 C 0.255 3.745 13 O -0.460 6.460 14 C -0.044 4.044 15 N -0.124 5.124 16 C -0.104 4.104 17 C -0.162 4.162 18 C -0.203 4.203 19 C 0.059 3.941 20 O -0.161 6.161 21 C -0.073 4.073 22 C 0.413 3.587 23 F -0.149 7.149 24 F -0.161 7.161 25 F -0.151 7.151 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.215 -0.932 14.549 14.581 hybrid contribution 0.337 0.473 0.450 0.735 sum 0.551 -0.459 14.999 15.017 Atomic orbital electron populations 1.22031 0.96388 0.99191 1.01692 1.21691 0.95146 0.82511 1.00611 1.43812 1.51169 1.11486 1.05353 1.19889 1.28169 1.12306 0.82030 0.87670 1.25410 0.95402 0.96973 0.99577 1.70064 1.20509 1.31003 1.26909 0.85924 0.79271 0.79375 0.80217 1.20205 1.20871 1.19174 1.17269 0.88243 0.86331 0.82614 1.90684 1.53910 1.16050 1.85394 1.21512 0.99456 0.90310 0.93087 1.68724 1.08051 1.06643 1.28970 1.22884 0.98998 1.00603 0.87882 1.21932 0.99923 0.94847 0.99525 1.21537 1.04609 0.97414 0.96733 1.19928 0.95172 0.84615 0.94380 1.86491 1.77194 1.27098 1.25295 1.23802 1.03587 0.91024 0.88929 1.19896 0.77224 0.87738 0.73841 1.93261 1.69953 1.76871 1.74865 1.93196 1.95582 1.85138 1.42143 1.93251 1.43474 1.96158 1.82195 0.89128 0.95240 0.95537 0.90880 0.90920 0.91990 0.82581 0.84908 0.84647 0.87834 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.03 37.16 0.34 -2.69 16 2 C 0.12 2.91 4.86 -4.04 -0.02 2.89 16 3 N -0.40 -10.74 2.64 -115.94 -0.31 -11.05 16 4 C -0.30 -8.27 9.31 -15.01 -0.14 -8.41 16 5 H 0.11 3.09 7.39 -52.49 -0.39 2.70 16 6 C 0.03 0.83 4.89 -17.45 -0.09 0.74 16 7 N -0.85 -21.74 8.48 55.50 0.47 -21.27 16 8 Si 0.93 20.31 29.60 -169.99 -5.03 15.28 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.47 12.30 7.53 -12.40 -0.09 12.20 16 13 O -0.58 -16.81 14.82 -16.59 -0.25 -17.05 16 14 C 0.10 2.04 6.49 -82.89 -0.54 1.51 16 15 N -0.41 -7.70 4.19 -9.72 -0.04 -7.74 16 16 C 0.05 0.77 11.17 -17.55 -0.20 0.57 16 17 C -0.14 -1.66 10.10 -39.35 -0.40 -2.05 16 18 C -0.18 -2.28 9.13 -39.15 -0.36 -2.64 16 19 C 0.11 1.95 6.71 -38.54 -0.26 1.69 16 20 O -0.25 -4.63 8.11 -40.53 -0.33 -4.96 16 21 C 0.00 0.06 4.72 37.16 0.18 0.23 16 22 C 0.47 6.35 3.32 37.16 0.12 6.48 16 23 F -0.17 -2.71 17.26 2.25 0.04 -2.67 16 24 F -0.18 -2.04 17.32 2.25 0.04 -2.01 16 25 F -0.17 -2.68 17.26 2.25 0.04 -2.65 16 26 H 0.09 2.29 5.83 -51.93 -0.30 1.99 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.58 6.56 -51.93 -0.34 0.24 16 29 H 0.07 1.82 6.29 -51.93 -0.33 1.49 16 30 H 0.07 1.59 5.36 -51.94 -0.28 1.31 16 31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.21 6.45 -52.48 -0.34 0.87 16 35 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 36 H 0.10 0.93 7.71 -51.92 -0.40 0.53 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -32.49 314.11 -5.26 -37.75 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.18 Total: 1.09 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.45 Total: 10.54 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.12 Total: -40.06 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.57 Total: -22.01 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.12 Total: -7.32 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.49 -5.26 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084087861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.429 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds