Wall clock time and date at job start Tue Mar 31 2020 11:34:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46505 * 109.46919 * 2 1
4 4 C 1.36817 * 120.00490 * 262.12873 * 3 2 1
5 5 H 1.07997 * 120.00101 * 197.86196 * 4 3 2
6 6 C 1.39083 * 119.99831 * 17.85945 * 4 3 2
7 7 N 1.31343 * 120.00099 * 20.35939 * 6 4 3
8 8 Si 1.86801 * 119.99844 * 200.36479 * 6 4 3
9 9 H 1.48503 * 109.46865 * 89.99866 * 8 6 4
10 10 H 1.48500 * 109.46938 * 209.99679 * 8 6 4
11 11 H 1.48494 * 109.46961 * 329.99977 * 8 6 4
12 12 C 1.34779 * 119.99473 * 82.12717 * 3 2 1
13 13 O 1.21608 * 119.99738 * 182.04649 * 12 3 2
14 14 C 1.47684 * 120.00342 * 2.05171 * 12 3 2
15 15 N 1.32911 * 119.78967 * 353.71112 * 14 12 3
16 16 C 1.31389 * 121.68729 * 180.02562 * 15 14 12
17 17 C 1.38762 * 121.07095 * 359.97438 * 16 15 14
18 18 C 1.38342 * 119.45534 * 0.25642 * 17 16 15
19 19 C 1.39291 * 118.45095 * 359.50904 * 18 17 16
20 20 O 1.35657 * 120.54149 * 180.23993 * 19 18 17
21 21 C 1.42903 * 117.00124 * 0.24893 * 20 19 18
22 22 C 1.52997 * 109.47149 * 179.97438 * 21 20 19
23 23 F 1.39902 * 109.47021 * 60.00479 * 22 21 20
24 24 F 1.39908 * 109.47194 * 180.02562 * 22 21 20
25 25 F 1.39900 * 109.47591 * 300.00166 * 22 21 20
26 26 H 1.09005 * 109.47138 * 59.99625 * 1 2 3
27 27 H 1.08996 * 109.46696 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47126 * 299.99847 * 1 2 3
29 29 H 1.08998 * 109.47250 * 240.00636 * 2 1 3
30 30 H 1.08994 * 109.47207 * 119.99855 * 2 1 3
31 31 H 0.96990 * 120.00221 * 179.97438 * 7 6 4
32 32 H 1.07998 * 119.46539 * 180.02562 * 16 15 14
33 33 H 1.07994 * 120.26881 * 179.97438 * 17 16 15
34 34 H 1.08003 * 120.77089 * 179.74654 * 18 17 16
35 35 H 1.08997 * 109.47329 * 300.00392 * 21 20 19
36 36 H 1.09008 * 109.46734 * 60.00404 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.3994 1.9723 -1.1736
5 1 3.0171 2.8579 -1.1566
6 6 1.9911 1.4324 -2.3887
7 7 0.9502 0.6328 -2.4354
8 14 2.9235 1.8443 -3.9541
9 1 4.0079 0.8510 -4.1603
10 1 1.9915 1.8068 -5.1096
11 1 3.5121 3.2026 -3.8367
12 6 2.0922 2.0698 1.1563
13 8 2.4621 3.2283 1.1515
14 6 1.7239 1.4175 2.4290
15 7 1.2021 0.1952 2.4178
16 6 0.8608 -0.4198 3.5276
17 6 1.0329 0.1860 4.7641
18 6 1.5678 1.4602 4.8288
19 6 1.9269 2.0903 3.6396
20 8 2.4597 3.3378 3.6540
21 6 2.6334 3.9543 4.9314
22 6 3.2425 5.3458 4.7476
23 9 2.3880 6.1290 3.9642
24 9 3.4132 5.9491 5.9983
25 9 4.4837 5.2314 4.1123
26 1 -0.3634 0.5139 -0.8900
27 1 -0.3632 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 1.8934 -0.5137 -0.8900
30 1 1.8934 -0.5138 0.8899
31 1 0.6653 0.2566 -3.2827
32 1 0.4401 -1.4132 3.4767
33 1 0.7474 -0.3312 5.6681
34 1 1.7072 1.9533 5.7795
35 1 1.6665 4.0431 5.4266
36 1 3.2996 3.3443 5.5417
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084087861.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:34:25
Heat of formation + Delta-G solvation = -145.174699 kcal
Electronic energy + Delta-G solvation = -27551.099842 eV
Core-core repulsion = 23008.936034 eV
Total energy + Delta-G solvation = -4542.163808 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 318.098 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-50.10323 -47.68508 -47.49545 -40.60541 -38.47795 -37.66333 -34.94496 -32.46498
-31.36661 -31.12196 -29.25669 -29.18909 -25.47830 -24.32250 -23.29180 -22.45172
-21.91530 -19.91969 -18.88017 -18.61772 -17.85871 -17.57170 -17.05357 -16.46537
-15.98978 -15.88659 -15.05580 -14.57696 -14.46178 -14.40843 -14.11661 -14.02001
-14.00213 -13.90889 -13.68371 -13.67941 -13.19992 -12.95223 -12.71586 -12.32782
-12.04419 -11.77451 -11.64188 -11.48277 -11.10661 -11.01637 -10.66095 -10.35381
-10.11995 -9.97688 -9.39502 -9.05373 -8.76429 -8.25097 -8.19435 -7.57587
-6.34959 -3.79012 1.07231 1.43557 2.24345 3.09589 3.15251 3.24588
3.30234 3.62318 3.65845 3.88552 4.06688 4.31456 4.47210 4.50588
4.69603 4.73965 4.80705 4.85328 5.08108 5.18417 5.36540 5.41351
5.87317 6.12367 6.12772 6.46631 6.67741 6.91118 6.99512 7.15224
7.27689 7.42854 7.49137 7.99750 8.09852 8.20054 8.56754 9.19083
9.42194 10.07115 10.58585
Molecular weight = 318.10amu
Principal moments of inertia in cm(-1)
A = 0.014098 B = 0.004745 C = 0.003694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1985.560174 B = 5899.248654 C = 7578.265824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.124 3.876
3 N -0.403 5.403
4 C -0.295 4.295
5 H 0.106 0.894
6 C 0.032 3.968
7 N -0.847 5.847
8 Si 0.926 3.074
9 H -0.276 1.276
10 H -0.283 1.283
11 H -0.267 1.267
12 C 0.467 3.533
13 O -0.576 6.576
14 C 0.096 3.904
15 N -0.411 5.411
16 C 0.055 3.945
17 C -0.141 4.141
18 C -0.177 4.177
19 C 0.109 3.891
20 O -0.250 6.250
21 C 0.005 3.995
22 C 0.467 3.533
23 F -0.168 7.168
24 F -0.179 7.179
25 F -0.169 7.169
26 H 0.090 0.910
27 H 0.029 0.971
28 H 0.026 0.974
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.270 0.730
32 H 0.157 0.843
33 H 0.133 0.867
34 H 0.136 0.864
35 H 0.104 0.896
36 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.164 -1.164 15.735 15.778
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.000 4.000
3 N -0.118 5.118
4 C -0.424 4.424
5 H 0.123 0.877
6 C -0.174 4.174
7 N -0.485 5.485
8 Si 0.752 3.248
9 H -0.202 1.202
10 H -0.209 1.209
11 H -0.192 1.192
12 C 0.255 3.745
13 O -0.460 6.460
14 C -0.044 4.044
15 N -0.124 5.124
16 C -0.104 4.104
17 C -0.162 4.162
18 C -0.203 4.203
19 C 0.059 3.941
20 O -0.161 6.161
21 C -0.073 4.073
22 C 0.413 3.587
23 F -0.149 7.149
24 F -0.161 7.161
25 F -0.151 7.151
26 H 0.109 0.891
27 H 0.048 0.952
28 H 0.045 0.955
29 H 0.091 0.909
30 H 0.091 0.909
31 H 0.080 0.920
32 H 0.174 0.826
33 H 0.151 0.849
34 H 0.154 0.846
35 H 0.122 0.878
36 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 0.215 -0.932 14.549 14.581
hybrid contribution 0.337 0.473 0.450 0.735
sum 0.551 -0.459 14.999 15.017
Atomic orbital electron populations
1.22031 0.96388 0.99191 1.01692 1.21691 0.95146 0.82511 1.00611
1.43812 1.51169 1.11486 1.05353 1.19889 1.28169 1.12306 0.82030
0.87670 1.25410 0.95402 0.96973 0.99577 1.70064 1.20509 1.31003
1.26909 0.85924 0.79271 0.79375 0.80217 1.20205 1.20871 1.19174
1.17269 0.88243 0.86331 0.82614 1.90684 1.53910 1.16050 1.85394
1.21512 0.99456 0.90310 0.93087 1.68724 1.08051 1.06643 1.28970
1.22884 0.98998 1.00603 0.87882 1.21932 0.99923 0.94847 0.99525
1.21537 1.04609 0.97414 0.96733 1.19928 0.95172 0.84615 0.94380
1.86491 1.77194 1.27098 1.25295 1.23802 1.03587 0.91024 0.88929
1.19896 0.77224 0.87738 0.73841 1.93261 1.69953 1.76871 1.74865
1.93196 1.95582 1.85138 1.42143 1.93251 1.43474 1.96158 1.82195
0.89128 0.95240 0.95537 0.90880 0.90920 0.91990 0.82581 0.84908
0.84647 0.87834 0.87871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.03 9.03 37.16 0.34 -2.69 16
2 C 0.12 2.91 4.86 -4.04 -0.02 2.89 16
3 N -0.40 -10.74 2.64 -115.94 -0.31 -11.05 16
4 C -0.30 -8.27 9.31 -15.01 -0.14 -8.41 16
5 H 0.11 3.09 7.39 -52.49 -0.39 2.70 16
6 C 0.03 0.83 4.89 -17.45 -0.09 0.74 16
7 N -0.85 -21.74 8.48 55.50 0.47 -21.27 16
8 Si 0.93 20.31 29.60 -169.99 -5.03 15.28 16
9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16
10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16
11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
12 C 0.47 12.30 7.53 -12.40 -0.09 12.20 16
13 O -0.58 -16.81 14.82 -16.59 -0.25 -17.05 16
14 C 0.10 2.04 6.49 -82.89 -0.54 1.51 16
15 N -0.41 -7.70 4.19 -9.72 -0.04 -7.74 16
16 C 0.05 0.77 11.17 -17.55 -0.20 0.57 16
17 C -0.14 -1.66 10.10 -39.35 -0.40 -2.05 16
18 C -0.18 -2.28 9.13 -39.15 -0.36 -2.64 16
19 C 0.11 1.95 6.71 -38.54 -0.26 1.69 16
20 O -0.25 -4.63 8.11 -40.53 -0.33 -4.96 16
21 C 0.00 0.06 4.72 37.16 0.18 0.23 16
22 C 0.47 6.35 3.32 37.16 0.12 6.48 16
23 F -0.17 -2.71 17.26 2.25 0.04 -2.67 16
24 F -0.18 -2.04 17.32 2.25 0.04 -2.01 16
25 F -0.17 -2.68 17.26 2.25 0.04 -2.65 16
26 H 0.09 2.29 5.83 -51.93 -0.30 1.99 16
27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.03 0.58 6.56 -51.93 -0.34 0.24 16
29 H 0.07 1.82 6.29 -51.93 -0.33 1.49 16
30 H 0.07 1.59 5.36 -51.94 -0.28 1.31 16
31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16
32 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16
33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
34 H 0.14 1.21 6.45 -52.48 -0.34 0.87 16
35 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16
36 H 0.10 0.93 7.71 -51.92 -0.40 0.53 16
LS Contribution 314.11 15.07 4.73 4.73
Total: -1.00 -32.49 314.11 -5.26 -37.75
By element:
Atomic # 1 Polarization: 4.27 SS G_CDS: -3.18 Total: 1.09 kcal
Atomic # 6 Polarization: 11.99 SS G_CDS: -1.45 Total: 10.54 kcal
Atomic # 7 Polarization: -40.19 SS G_CDS: 0.12 Total: -40.06 kcal
Atomic # 8 Polarization: -21.43 SS G_CDS: -0.57 Total: -22.01 kcal
Atomic # 9 Polarization: -7.44 SS G_CDS: 0.12 Total: -7.32 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.49 -5.26 -37.75 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084087861.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -107.429 kcal
(2) G-P(sol) polarization free energy of solvation -32.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) -145.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds