Wall clock time and date at job start Tue Mar 31 2020 11:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46919 * 2 1 4 4 C 1.36817 * 120.00490 * 262.12873 * 3 2 1 5 5 H 1.07997 * 120.00101 * 197.86196 * 4 3 2 6 6 C 1.39083 * 119.99831 * 17.85945 * 4 3 2 7 7 N 1.31343 * 120.00099 * 20.35939 * 6 4 3 8 8 Si 1.86801 * 119.99844 * 200.36479 * 6 4 3 9 9 H 1.48503 * 109.46865 * 89.99866 * 8 6 4 10 10 H 1.48500 * 109.46938 * 209.99679 * 8 6 4 11 11 H 1.48494 * 109.46961 * 329.99977 * 8 6 4 12 12 C 1.34779 * 119.99473 * 82.12717 * 3 2 1 13 13 O 1.21608 * 119.99738 * 182.04649 * 12 3 2 14 14 C 1.47684 * 120.00342 * 2.05171 * 12 3 2 15 15 N 1.32911 * 119.78967 * 353.71112 * 14 12 3 16 16 C 1.31389 * 121.68729 * 180.02562 * 15 14 12 17 17 C 1.38762 * 121.07095 * 359.97438 * 16 15 14 18 18 C 1.38342 * 119.45534 * 0.25642 * 17 16 15 19 19 C 1.39291 * 118.45095 * 359.50904 * 18 17 16 20 20 O 1.35657 * 120.54149 * 180.23993 * 19 18 17 21 21 C 1.42903 * 117.00124 * 0.24893 * 20 19 18 22 22 C 1.52997 * 109.47149 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.47021 * 60.00479 * 22 21 20 24 24 F 1.39908 * 109.47194 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.47591 * 300.00166 * 22 21 20 26 26 H 1.09005 * 109.47138 * 59.99625 * 1 2 3 27 27 H 1.08996 * 109.46696 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47126 * 299.99847 * 1 2 3 29 29 H 1.08998 * 109.47250 * 240.00636 * 2 1 3 30 30 H 1.08994 * 109.47207 * 119.99855 * 2 1 3 31 31 H 0.96990 * 120.00221 * 179.97438 * 7 6 4 32 32 H 1.07998 * 119.46539 * 180.02562 * 16 15 14 33 33 H 1.07994 * 120.26881 * 179.97438 * 17 16 15 34 34 H 1.08003 * 120.77089 * 179.74654 * 18 17 16 35 35 H 1.08997 * 109.47329 * 300.00392 * 21 20 19 36 36 H 1.09008 * 109.46734 * 60.00404 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3994 1.9723 -1.1736 5 1 3.0171 2.8579 -1.1566 6 6 1.9911 1.4324 -2.3887 7 7 0.9502 0.6328 -2.4354 8 14 2.9235 1.8443 -3.9541 9 1 4.0079 0.8510 -4.1603 10 1 1.9915 1.8068 -5.1096 11 1 3.5121 3.2026 -3.8367 12 6 2.0922 2.0698 1.1563 13 8 2.4621 3.2283 1.1515 14 6 1.7239 1.4175 2.4290 15 7 1.2021 0.1952 2.4178 16 6 0.8608 -0.4198 3.5276 17 6 1.0329 0.1860 4.7641 18 6 1.5678 1.4602 4.8288 19 6 1.9269 2.0903 3.6396 20 8 2.4597 3.3378 3.6540 21 6 2.6334 3.9543 4.9314 22 6 3.2425 5.3458 4.7476 23 9 2.3880 6.1290 3.9642 24 9 3.4132 5.9491 5.9983 25 9 4.4837 5.2314 4.1123 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.6653 0.2566 -3.2827 32 1 0.4401 -1.4132 3.4767 33 1 0.7474 -0.3312 5.6681 34 1 1.7072 1.9533 5.7795 35 1 1.6665 4.0431 5.4266 36 1 3.2996 3.3443 5.5417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084087861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:24 Heat of formation + Delta-G solvation = -165.663577 kcal Electronic energy + Delta-G solvation = -27551.988307 eV Core-core repulsion = 23008.936034 eV Total energy + Delta-G solvation = -4543.052272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.19859 -48.73740 -48.68770 -41.91270 -40.02860 -39.14767 -36.91287 -34.05931 -32.92276 -32.27189 -31.04896 -30.42187 -27.27407 -25.53803 -24.71033 -23.78780 -23.49695 -21.53598 -19.99638 -19.72781 -19.00863 -18.90000 -18.64656 -18.21614 -17.24381 -17.03956 -16.78553 -15.96762 -15.81149 -15.68225 -15.62608 -15.42973 -15.23343 -15.11125 -14.86032 -14.81925 -14.66819 -14.45367 -14.36891 -13.84781 -13.58070 -13.20666 -12.96195 -12.82653 -12.65069 -12.61408 -12.52027 -12.15101 -12.00971 -11.59358 -10.89019 -10.62387 -10.57168 -9.99693 -9.57728 -9.38993 -8.27588 -5.87280 -0.15983 0.32132 1.20571 1.39202 1.41489 1.53823 2.00876 2.10493 2.28069 2.64162 2.85352 2.89941 2.98795 3.24524 3.29219 3.56535 3.65915 3.88544 3.91092 3.92407 4.15161 4.31661 4.57988 4.81983 4.95796 5.08398 5.10439 5.18774 5.35033 5.41853 5.49278 5.62449 6.03191 6.06704 6.22692 6.58461 6.97471 7.22336 7.50819 8.12849 8.64675 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.004745 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.560174 B = 5899.248654 C = 7578.265824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.134 3.866 3 N -0.426 5.426 4 C -0.349 4.349 5 H 0.069 0.931 6 C 0.005 3.995 7 N -0.861 5.861 8 Si 0.989 3.011 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.279 1.279 12 C 0.458 3.542 13 O -0.623 6.623 14 C 0.039 3.961 15 N -0.434 5.434 16 C 0.048 3.952 17 C -0.099 4.099 18 C -0.162 4.162 19 C 0.104 3.896 20 O -0.297 6.297 21 C 0.001 3.999 22 C 0.463 3.537 23 F -0.190 7.190 24 F -0.163 7.163 25 F -0.189 7.189 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.275 0.725 32 H 0.194 0.806 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.142 0.858 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -3.437 19.632 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.012 3.988 3 N -0.142 5.142 4 C -0.477 4.477 5 H 0.087 0.913 6 C -0.199 4.199 7 N -0.498 5.498 8 Si 0.812 3.188 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.205 1.205 12 C 0.248 3.752 13 O -0.511 6.511 14 C -0.097 4.097 15 N -0.146 5.146 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.188 4.188 19 C 0.054 3.946 20 O -0.209 6.209 21 C -0.076 4.076 22 C 0.409 3.591 23 F -0.171 7.171 24 F -0.145 7.145 25 F -0.171 7.171 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.211 0.789 33 H 0.210 0.790 34 H 0.205 0.795 35 H 0.159 0.841 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.815 -3.223 18.445 18.742 hybrid contribution 0.589 1.157 -0.336 1.341 sum -0.226 -2.066 18.108 18.227 Atomic orbital electron populations 1.21819 0.95619 1.00183 0.99927 1.21683 0.95614 0.81241 1.00292 1.43971 1.52525 1.12503 1.05182 1.19679 1.30778 1.13221 0.84066 0.91262 1.26074 0.95724 0.96659 1.01490 1.70150 1.20634 1.31288 1.27745 0.85027 0.78377 0.78558 0.76860 1.18993 1.19368 1.20454 1.18215 0.86368 0.86131 0.84460 1.90603 1.55315 1.18295 1.86883 1.20712 1.04476 0.92589 0.91924 1.68381 1.08283 1.05913 1.32060 1.23648 0.98174 1.01809 0.87663 1.22634 0.95006 0.93667 1.00598 1.22130 1.02461 0.97620 0.96553 1.20063 0.94979 0.84565 0.94984 1.86405 1.77469 1.27820 1.29189 1.24224 1.06402 0.89766 0.87182 1.20266 0.76341 0.88704 0.73819 1.93217 1.70530 1.77658 1.75717 1.93222 1.95456 1.85047 1.40739 1.93211 1.44798 1.96278 1.82790 0.92284 0.92628 0.95723 0.93031 0.89085 0.91475 0.78900 0.79003 0.79536 0.84069 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 9.03 71.98 0.65 -4.72 16 2 C 0.13 6.57 4.86 86.38 0.42 6.99 16 3 N -0.43 -24.31 2.64 -638.98 -1.68 -25.99 16 4 C -0.35 -21.22 9.31 84.12 0.78 -20.44 16 5 H 0.07 4.54 7.39 -2.91 -0.02 4.52 16 6 C 0.00 0.26 4.89 84.97 0.42 0.67 16 7 N -0.86 -46.06 8.48 21.69 0.18 -45.88 16 8 Si 0.99 43.74 29.60 68.60 2.03 45.77 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.46 25.77 7.53 86.74 0.65 26.42 16 13 O -0.62 -39.43 14.82 16.85 0.25 -39.18 16 14 C 0.04 1.68 6.49 41.90 0.27 1.96 16 15 N -0.43 -15.59 4.19 -184.66 -0.77 -16.36 16 16 C 0.05 1.10 11.17 84.88 0.95 2.05 16 17 C -0.10 -1.60 10.10 22.42 0.23 -1.37 16 18 C -0.16 -3.19 9.13 22.55 0.21 -2.99 16 19 C 0.10 3.53 6.71 22.94 0.15 3.69 16 20 O -0.30 -10.86 8.11 -68.82 -0.56 -11.41 16 21 C 0.00 0.01 4.72 71.98 0.34 0.35 16 22 C 0.46 12.22 3.32 71.98 0.24 12.45 16 23 F -0.19 -6.25 17.26 44.97 0.78 -5.47 16 24 F -0.16 -3.40 17.32 44.97 0.78 -2.62 16 25 F -0.19 -6.13 17.26 44.97 0.78 -5.35 16 26 H 0.06 3.09 5.83 -2.38 -0.01 3.08 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.02 1.10 6.56 -2.39 -0.02 1.08 16 29 H 0.05 2.68 6.29 -2.39 -0.02 2.67 16 30 H 0.09 4.06 5.36 -2.40 -0.01 4.05 16 31 H 0.28 13.60 8.31 -92.72 -0.77 12.83 16 32 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.19 1.76 6.45 -2.91 -0.02 1.74 16 35 H 0.14 1.91 7.69 -2.39 -0.02 1.90 16 36 H 0.14 1.87 7.71 -2.38 -0.02 1.86 16 Total: -1.00 -82.84 314.11 8.23 -74.61 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.15 Total: 6.82 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 5.31 Total: 25.07 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.27 Total: -88.23 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.31 Total: -50.60 kcal Atomic # 9 Polarization: -15.78 SS G_CDS: 2.33 Total: -13.45 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -82.84 8.23 -74.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084087861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.055 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds