Wall clock time and date at job start Tue Mar 31 2020 11:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99926 * 2 1 4 4 C 1.50707 * 109.46744 * 269.99752 * 3 2 1 5 5 H 1.07994 * 119.99900 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00054 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99592 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00126 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47114 * 89.99631 * 8 6 4 10 10 H 1.48500 * 109.47231 * 209.99971 * 8 6 4 11 11 H 1.48502 * 109.46915 * 329.99921 * 8 6 4 12 12 C 1.34770 * 120.00422 * 179.97438 * 2 1 3 13 13 O 1.21593 * 120.00361 * 180.02562 * 12 2 1 14 14 N 1.34785 * 119.99664 * 0.02562 * 12 2 1 15 15 C 1.40281 * 120.00015 * 184.44095 * 14 12 2 16 16 C 1.38686 * 120.06357 * 325.32926 * 15 14 12 17 17 C 1.38208 * 120.01138 * 180.27797 * 16 15 14 18 18 C 1.38473 * 120.13269 * 359.97438 * 17 16 15 19 19 F 1.35101 * 119.93581 * 180.02562 * 18 17 16 20 20 C 1.38432 * 120.12614 * 0.02562 * 18 17 16 21 21 C 1.38546 * 119.99227 * 359.97438 * 20 18 17 22 22 O 1.35979 * 120.07118 * 179.97438 * 21 20 18 23 23 C 1.42905 * 116.99468 * 0.02562 * 22 21 20 24 24 F 1.39899 * 109.47221 * 299.99995 * 23 22 21 25 25 F 1.39892 * 109.47528 * 60.00392 * 23 22 21 26 26 H 1.08999 * 109.47374 * 270.00650 * 1 2 3 27 27 H 1.09004 * 109.47107 * 30.00719 * 1 2 3 28 28 H 1.09000 * 109.46979 * 150.00586 * 1 2 3 29 29 H 1.09002 * 109.47317 * 29.99257 * 3 2 1 30 30 H 1.08994 * 109.47350 * 149.99549 * 3 2 1 31 31 H 0.97003 * 120.00006 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99757 * 4.44195 * 14 12 2 33 33 H 1.08005 * 119.99295 * 0.27033 * 16 15 14 34 34 H 1.07995 * 119.93252 * 179.97438 * 17 16 15 35 35 H 1.07999 * 120.00379 * 180.02562 * 20 18 17 36 36 H 1.09007 * 109.46792 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6730 7 7 3.5542 3.6176 -0.6734 8 14 3.4389 3.4162 -3.4341 9 1 2.3092 4.2593 -3.9013 10 1 4.6995 4.1986 -3.4965 11 1 3.5559 2.2188 -4.3047 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1632 -3.5474 0.0951 16 6 3.4087 -3.6804 -0.5003 17 6 4.0931 -4.8778 -0.4113 18 6 3.5381 -5.9466 0.2722 19 9 4.2109 -7.1151 0.3572 20 6 2.2953 -5.8200 0.8687 21 6 1.6047 -4.6220 0.7827 22 8 0.3835 -4.4961 1.3675 23 6 -0.1273 -5.6398 2.0554 24 9 -0.2479 -6.7074 1.1594 25 9 0.7488 -5.9934 3.0870 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5137 29 1 1.6084 2.0285 0.5137 30 1 3.1498 1.1385 0.5139 31 1 4.0317 4.4431 -0.8506 32 1 0.4972 -2.3356 -0.0649 33 1 3.8438 -2.8481 -1.0337 34 1 5.0627 -4.9801 -0.8758 35 1 1.8645 -6.6547 1.4016 36 1 -1.1060 -5.4048 2.4739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085612280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:09 Heat of formation + Delta-G solvation = -175.291792 kcal Electronic energy + Delta-G solvation = -26744.723708 eV Core-core repulsion = 22201.253926 eV Total energy + Delta-G solvation = -4543.469783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.67328 -48.91202 -47.65700 -40.69084 -39.25754 -37.38991 -35.03765 -34.35361 -32.57044 -30.65263 -29.28641 -27.65927 -26.43643 -25.80239 -23.60852 -22.92065 -22.11523 -19.63059 -19.43021 -18.84124 -18.23403 -17.67575 -17.13113 -16.85120 -16.55387 -15.95963 -15.66883 -15.50697 -15.02706 -14.82813 -14.65459 -14.20804 -14.16532 -14.01055 -13.96414 -13.72351 -13.17785 -13.14258 -12.87797 -12.69048 -12.41587 -12.20592 -11.99985 -11.76891 -11.39033 -11.23041 -10.94321 -10.60808 -10.20072 -10.07866 -9.68940 -9.37092 -8.87104 -8.46349 -8.00467 -7.62392 -6.07076 -4.12134 1.04274 1.08920 2.20031 3.02759 3.12414 3.28488 3.35541 3.37314 3.40299 3.85153 3.92154 4.19278 4.30116 4.33350 4.47155 4.60524 4.83473 4.92273 5.26852 5.32247 5.45822 5.57179 5.80083 5.83307 5.95819 6.08987 6.24089 6.43525 6.52307 6.70775 7.03914 7.29277 7.43632 7.59373 7.90109 8.18966 8.48593 8.88072 9.13813 9.53309 11.00815 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003375 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.370446 B = 8294.672143 C = 9214.295471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.609 5.609 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.699 3.301 13 O -0.569 6.569 14 N -0.689 5.689 15 C 0.165 3.835 16 C -0.063 4.063 17 C -0.152 4.152 18 C 0.107 3.893 19 F -0.138 7.138 20 C -0.209 4.209 21 C 0.094 3.906 22 O -0.315 6.315 23 C 0.412 3.588 24 F -0.199 7.199 25 F -0.197 7.197 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.168 0.832 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -18.774 4.658 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.344 5.344 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.401 3.599 13 O -0.445 6.445 14 N -0.339 5.339 15 C 0.067 3.933 16 C -0.084 4.084 17 C -0.171 4.171 18 C 0.086 3.914 19 F -0.117 7.117 20 C -0.229 4.229 21 C 0.048 3.952 22 O -0.233 6.233 23 C 0.322 3.678 24 F -0.181 7.181 25 F -0.179 7.179 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.988 -18.348 4.730 20.972 hybrid contribution -0.221 -0.179 -0.833 0.880 sum -9.209 -18.527 3.897 21.053 Atomic orbital electron populations 1.21608 0.81524 1.02403 1.00546 1.47498 1.05830 1.06222 1.74859 1.19286 0.92424 0.76720 0.97577 1.21444 1.36663 1.06325 0.92303 0.92426 1.24925 0.95298 0.96363 0.97442 1.69929 1.38282 1.14349 1.30747 0.86490 0.77688 0.78588 0.84603 1.20669 1.21072 1.19901 1.15894 0.85533 0.79979 0.78522 1.90879 1.11272 1.85425 1.56947 1.42849 1.10230 1.03027 1.77791 1.16871 0.94035 0.84196 0.98149 1.21301 0.92692 0.97611 0.96783 1.21108 1.01955 0.91952 1.02093 1.17242 0.90978 0.82347 1.00789 1.91488 1.79598 1.45889 1.94733 1.21114 0.96633 0.98018 1.07156 1.18207 0.85683 0.94466 0.96846 1.86611 1.32567 1.37099 1.67008 1.23377 0.92628 0.75382 0.76441 1.93103 1.96337 1.58947 1.69684 1.93108 1.73122 1.92084 1.59580 0.93508 0.90167 0.93145 0.94674 0.93562 0.92662 0.75666 0.81501 0.83952 0.83743 0.80056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.85 16 2 N -0.61 -12.52 2.86 -188.73 -0.54 -13.06 16 3 C 0.26 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.70 14.38 8.13 -86.92 -0.71 13.67 16 13 O -0.57 -13.82 13.34 5.28 0.07 -13.75 16 14 N -0.69 -10.98 5.08 -14.08 -0.07 -11.05 16 15 C 0.16 2.55 6.33 -83.44 -0.53 2.02 16 16 C -0.06 -1.00 8.70 -39.43 -0.34 -1.34 16 17 C -0.15 -2.05 10.02 -39.51 -0.40 -2.45 16 18 C 0.11 1.44 7.30 -39.42 -0.29 1.15 16 19 F -0.14 -1.84 17.26 2.25 0.04 -1.81 16 20 C -0.21 -2.72 8.23 -39.40 -0.32 -3.04 16 21 C 0.09 1.26 6.50 -39.08 -0.25 1.01 16 22 O -0.32 -3.42 9.99 -19.67 -0.20 -3.61 16 23 C 0.41 3.13 5.97 101.05 0.60 3.74 16 24 F -0.20 -1.78 15.58 2.25 0.04 -1.74 16 25 F -0.20 -1.90 15.58 2.25 0.04 -1.86 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.05 0.60 6.30 -51.93 -0.33 0.27 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.41 5.27 6.26 -40.82 -0.26 5.02 16 33 H 0.17 2.97 6.18 -52.48 -0.32 2.65 16 34 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.14 1.71 5.10 -52.49 -0.27 1.44 16 36 H 0.18 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -33.22 323.12 -5.32 -38.54 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.21 Total: 2.50 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -2.07 Total: 9.89 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.13 Total: -49.46 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.13 Total: -17.37 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.22 -5.32 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085612280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.748 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds