Wall clock time and date at job start Tue Mar 31 2020 11:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99926 * 2 1 4 4 C 1.50707 * 109.46744 * 269.99752 * 3 2 1 5 5 H 1.07994 * 119.99900 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00054 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99592 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00126 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47114 * 89.99631 * 8 6 4 10 10 H 1.48500 * 109.47231 * 209.99971 * 8 6 4 11 11 H 1.48502 * 109.46915 * 329.99921 * 8 6 4 12 12 C 1.34770 * 120.00422 * 179.97438 * 2 1 3 13 13 O 1.21593 * 120.00361 * 180.02562 * 12 2 1 14 14 N 1.34785 * 119.99664 * 0.02562 * 12 2 1 15 15 C 1.40281 * 120.00015 * 184.44095 * 14 12 2 16 16 C 1.38686 * 120.06357 * 325.32926 * 15 14 12 17 17 C 1.38208 * 120.01138 * 180.27797 * 16 15 14 18 18 C 1.38473 * 120.13269 * 359.97438 * 17 16 15 19 19 F 1.35101 * 119.93581 * 180.02562 * 18 17 16 20 20 C 1.38432 * 120.12614 * 0.02562 * 18 17 16 21 21 C 1.38546 * 119.99227 * 359.97438 * 20 18 17 22 22 O 1.35979 * 120.07118 * 179.97438 * 21 20 18 23 23 C 1.42905 * 116.99468 * 0.02562 * 22 21 20 24 24 F 1.39899 * 109.47221 * 299.99995 * 23 22 21 25 25 F 1.39892 * 109.47528 * 60.00392 * 23 22 21 26 26 H 1.08999 * 109.47374 * 270.00650 * 1 2 3 27 27 H 1.09004 * 109.47107 * 30.00719 * 1 2 3 28 28 H 1.09000 * 109.46979 * 150.00586 * 1 2 3 29 29 H 1.09002 * 109.47317 * 29.99257 * 3 2 1 30 30 H 1.08994 * 109.47350 * 149.99549 * 3 2 1 31 31 H 0.97003 * 120.00006 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99757 * 4.44195 * 14 12 2 33 33 H 1.08005 * 119.99295 * 0.27033 * 16 15 14 34 34 H 1.07995 * 119.93252 * 179.97438 * 17 16 15 35 35 H 1.07999 * 120.00379 * 180.02562 * 20 18 17 36 36 H 1.09007 * 109.46792 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6730 7 7 3.5542 3.6176 -0.6734 8 14 3.4389 3.4162 -3.4341 9 1 2.3092 4.2593 -3.9013 10 1 4.6995 4.1986 -3.4965 11 1 3.5559 2.2188 -4.3047 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1632 -3.5474 0.0951 16 6 3.4087 -3.6804 -0.5003 17 6 4.0931 -4.8778 -0.4113 18 6 3.5381 -5.9466 0.2722 19 9 4.2109 -7.1151 0.3572 20 6 2.2953 -5.8200 0.8687 21 6 1.6047 -4.6220 0.7827 22 8 0.3835 -4.4961 1.3675 23 6 -0.1273 -5.6398 2.0554 24 9 -0.2479 -6.7074 1.1594 25 9 0.7488 -5.9934 3.0870 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5137 29 1 1.6084 2.0285 0.5137 30 1 3.1498 1.1385 0.5139 31 1 4.0317 4.4431 -0.8506 32 1 0.4972 -2.3356 -0.0649 33 1 3.8438 -2.8481 -1.0337 34 1 5.0627 -4.9801 -0.8758 35 1 1.8645 -6.6547 1.4016 36 1 -1.1060 -5.4048 2.4739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085612280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:09 Heat of formation + Delta-G solvation = -197.098672 kcal Electronic energy + Delta-G solvation = -26745.669326 eV Core-core repulsion = 22201.253926 eV Total energy + Delta-G solvation = -4544.415400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.33465 -49.99251 -48.32133 -41.94232 -40.53638 -38.44131 -36.68641 -35.81239 -34.58758 -31.71852 -30.65892 -29.33312 -27.38094 -27.11110 -25.27013 -24.08579 -23.41940 -21.10924 -20.36891 -19.80385 -18.95050 -18.86846 -18.64770 -18.36210 -17.82852 -17.13762 -16.83530 -16.74319 -16.42436 -16.33909 -15.80709 -15.59178 -15.03861 -14.98170 -14.83111 -14.75464 -14.65178 -14.48062 -14.06345 -13.89288 -13.66917 -13.47590 -13.29620 -13.11886 -12.96155 -12.79922 -12.50395 -12.39879 -12.17065 -11.71699 -11.40650 -11.00107 -10.60941 -9.98283 -9.54666 -8.97970 -8.19121 -6.33781 -0.09710 -0.00160 1.39321 1.41888 1.42710 1.51903 1.63811 2.04823 2.39184 2.49160 2.51311 2.98601 3.06571 3.11082 3.48451 3.59276 3.67894 3.81424 3.88680 4.15371 4.31323 4.46338 4.65839 4.72817 4.82799 4.94038 4.98789 5.08849 5.22678 5.33543 5.38951 5.56250 5.77413 5.88370 6.02287 6.08220 6.74887 7.00234 7.32869 7.58433 8.87339 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.003375 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.370446 B = 8294.672143 C = 9214.295471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.275 3.725 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.695 3.305 13 O -0.616 6.616 14 N -0.668 5.668 15 C 0.140 3.860 16 C -0.077 4.077 17 C -0.150 4.150 18 C 0.109 3.891 19 F -0.136 7.136 20 C -0.208 4.208 21 C 0.109 3.891 22 O -0.318 6.318 23 C 0.406 3.594 24 F -0.206 7.206 25 F -0.209 7.209 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.031 0.969 30 H 0.002 0.998 31 H 0.267 0.733 32 H 0.421 0.579 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 -20.206 4.410 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.351 5.351 3 C 0.154 3.846 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.397 3.603 13 O -0.496 6.496 14 N -0.320 5.320 15 C 0.043 3.957 16 C -0.098 4.098 17 C -0.170 4.170 18 C 0.089 3.911 19 F -0.114 7.114 20 C -0.228 4.228 21 C 0.063 3.937 22 O -0.235 6.235 23 C 0.317 3.683 24 F -0.188 7.188 25 F -0.191 7.191 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.262 0.738 33 H 0.158 0.842 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -11.057 -19.833 4.489 23.146 hybrid contribution 0.357 0.136 -0.675 0.776 sum -10.700 -19.697 3.814 22.737 Atomic orbital electron populations 1.21908 0.77864 1.03925 1.02747 1.47351 1.08030 1.04749 1.75009 1.18737 0.91019 0.78795 0.96078 1.21712 1.36786 1.06468 0.93083 0.92821 1.25803 0.94928 0.96444 1.01729 1.70045 1.38943 1.14823 1.32941 0.85436 0.77990 0.78159 0.79328 1.18901 1.20808 1.19863 1.16034 0.85087 0.80962 0.78211 1.90847 1.13547 1.86312 1.58887 1.42436 1.10729 1.01814 1.77005 1.16999 0.94469 0.84472 0.99756 1.21113 0.93451 0.97652 0.97579 1.21187 1.02500 0.91238 1.02043 1.17296 0.91137 0.82241 1.00417 1.91498 1.79600 1.45656 1.94667 1.21290 0.96370 0.98278 1.06845 1.18070 0.86514 0.93464 0.95690 1.86630 1.31010 1.39063 1.66812 1.24398 0.94031 0.74274 0.75602 1.93090 1.96300 1.59328 1.70056 1.93087 1.73886 1.92131 1.60006 0.90888 0.90576 0.89730 0.95152 0.98009 0.92422 0.73834 0.84211 0.82278 0.82347 0.74261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.24 127.77 1.31 3.48 16 2 N -0.62 -25.58 2.86 -869.29 -2.48 -28.06 16 3 C 0.28 14.50 5.16 85.63 0.44 14.94 16 4 C -0.54 -30.54 9.39 25.60 0.24 -30.30 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.57 5.46 84.66 0.46 1.03 16 7 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 8 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.70 29.12 8.13 179.05 1.46 30.57 16 13 O -0.62 -31.41 13.34 -4.01 -0.05 -31.47 16 14 N -0.67 -20.85 5.08 -316.73 -1.61 -22.46 16 15 C 0.14 4.25 6.33 38.14 0.24 4.49 16 16 C -0.08 -2.48 8.70 22.37 0.19 -2.29 16 17 C -0.15 -4.03 10.02 22.32 0.22 -3.81 16 18 C 0.11 2.80 7.30 22.37 0.16 2.96 16 19 F -0.14 -3.39 17.26 44.97 0.78 -2.62 16 20 C -0.21 -5.01 8.23 22.39 0.18 -4.83 16 21 C 0.11 2.73 6.50 22.59 0.15 2.88 16 22 O -0.32 -5.95 9.99 -93.32 -0.93 -6.88 16 23 C 0.41 4.72 5.97 113.37 0.68 5.40 16 24 F -0.21 -3.04 15.58 44.97 0.70 -2.34 16 25 F -0.21 -3.44 15.58 44.97 0.70 -2.74 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.21 8.07 -2.38 -0.02 2.19 16 28 H 0.08 1.76 6.30 -2.39 -0.02 1.75 16 29 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.42 10.07 6.26 -92.71 -0.58 9.49 16 33 H 0.14 5.31 6.18 -2.91 -0.02 5.29 16 34 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.16 3.36 5.10 -2.91 -0.01 3.35 16 36 H 0.24 -0.07 8.14 -2.38 -0.02 -0.08 16 Total: -1.00 -74.83 323.12 5.73 -69.10 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.58 Total: 11.62 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 5.74 Total: 24.53 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.81 Total: -105.49 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.99 Total: -38.35 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 2.18 Total: -7.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -74.83 5.73 -69.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085612280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.002 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds