Wall clock time and date at job start Tue Mar 31 2020 11:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99770 * 2 1 4 4 C 1.50701 * 109.46875 * 180.02562 * 3 2 1 5 5 C 1.35313 * 126.66584 * 89.99575 * 4 3 2 6 6 C 1.42286 * 103.92358 * 180.20447 * 5 4 3 7 7 C 1.48289 * 126.94011 * 179.77886 * 6 5 4 8 8 O 1.21500 * 120.00439 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99726 * 180.02562 * 7 6 5 10 10 C 1.39833 * 119.99885 * 174.78700 * 9 7 6 11 11 C 1.38983 * 120.04012 * 326.13437 * 10 9 7 12 12 C 1.38151 * 120.06681 * 179.76567 * 11 10 9 13 13 C 1.38173 * 120.14064 * 0.51378 * 12 11 10 14 14 C 1.38918 * 120.07493 * 359.73887 * 13 12 11 15 15 O 1.35750 * 120.03168 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99934 * 185.92578 * 15 14 13 17 17 H 1.08004 * 119.99599 * 5.40373 * 16 15 14 18 18 C 1.38648 * 120.00113 * 185.40223 * 16 15 14 19 19 N 1.31559 * 120.00229 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47178 * 90.00227 * 20 18 16 22 22 H 1.48502 * 109.46875 * 210.00294 * 20 18 16 23 23 H 1.48505 * 109.47197 * 329.99887 * 20 18 16 24 24 C 1.38741 * 120.03805 * 146.40977 * 10 9 7 25 25 N 1.31002 * 106.11441 * 359.63890 * 6 5 4 26 26 O 1.20898 * 111.44195 * 0.38814 * 25 6 5 27 27 H 1.09001 * 109.46748 * 59.99883 * 1 2 3 28 28 H 1.09001 * 109.46508 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46757 * 299.99649 * 1 2 3 30 30 H 1.08996 * 109.47015 * 60.00247 * 3 2 1 31 31 H 1.08995 * 109.47247 * 299.99812 * 3 2 1 32 32 H 1.08005 * 128.03737 * 359.95143 * 5 4 3 33 33 H 0.97000 * 120.00710 * 354.78832 * 9 7 6 34 34 H 1.07997 * 119.96351 * 0.02562 * 11 10 9 35 35 H 1.07995 * 119.92962 * 180.25217 * 12 11 10 36 36 H 1.08000 * 119.96204 * 179.76530 * 13 12 11 37 37 H 0.97001 * 119.99601 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.07322 * 359.95918 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3176 1.1228 -1.0864 6 6 5.6256 1.0142 -0.5369 7 6 6.9008 0.9066 -1.2860 8 8 6.8936 0.9061 -2.5009 9 7 8.0679 0.8095 -0.6190 10 6 9.2588 0.5985 -1.3209 11 6 9.2577 -0.1730 -2.4769 12 6 10.4331 -0.3777 -3.1735 13 6 11.6148 0.1746 -2.7178 14 6 11.6236 0.9424 -1.5602 15 8 12.7852 1.4842 -1.1130 16 6 12.7481 2.1139 0.0787 17 1 11.8455 2.0948 0.6716 18 6 13.8685 2.7857 0.5430 19 7 13.8325 3.3997 1.7060 20 14 15.4293 2.8193 -0.4829 21 1 15.4029 3.9979 -1.3858 22 1 16.6094 2.9091 0.4141 23 1 15.5163 1.5773 -1.2925 24 6 10.4438 1.1545 -0.8610 25 7 5.4758 1.0316 0.7645 26 8 4.3108 1.1236 1.0741 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.0330 1.1447 -2.1280 33 1 8.0819 0.8858 0.3479 34 1 8.3364 -0.6094 -2.8333 35 1 10.4290 -0.9743 -4.0737 36 1 12.5327 0.0096 -3.2625 37 1 14.6166 3.8694 2.0309 38 1 10.4481 1.7513 0.0391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090253581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:14 Heat of formation + Delta-G solvation = -2.434660 kcal Electronic energy + Delta-G solvation = -24839.915710 eV Core-core repulsion = 20845.798315 eV Total energy + Delta-G solvation = -3994.117395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.41322 -40.28658 -38.83674 -38.48804 -36.67055 -34.53532 -34.25836 -33.01114 -32.36819 -29.59135 -28.90774 -28.25960 -26.13485 -25.46773 -24.99205 -23.09264 -21.84547 -21.74217 -19.88902 -18.52019 -18.23035 -17.87912 -17.65283 -16.96284 -16.77934 -16.37134 -15.74900 -15.49810 -15.33030 -14.99637 -14.58074 -14.25098 -13.98533 -13.86981 -13.63075 -13.41827 -13.13850 -12.75995 -12.38714 -12.21025 -12.07627 -11.90558 -11.75534 -11.34327 -10.97661 -10.83315 -10.72852 -10.38811 -10.35171 -10.17511 -10.00294 -9.80515 -9.53309 -8.87740 -7.88493 -7.35923 -6.44198 -4.11706 0.74578 1.20904 1.96766 2.23154 2.42867 2.83742 3.07412 3.21520 3.25348 3.39653 3.44678 3.69533 4.13913 4.22148 4.44509 4.46763 4.59359 4.70565 4.81721 4.83086 4.84085 4.98730 5.06250 5.08834 5.17556 5.49404 5.57491 5.85583 5.89358 6.07108 6.12911 6.41667 6.43297 6.78005 6.81965 7.11822 7.14325 7.42001 7.56403 7.69497 7.74479 7.97698 8.05472 8.90878 9.52054 10.63333 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.002417 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.589206 B =11580.373782 C =12548.320960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.145 3.855 4 C -0.042 4.042 5 C -0.151 4.151 6 C -0.026 4.026 7 C 0.598 3.402 8 O -0.501 6.501 9 N -0.651 5.651 10 C 0.176 3.824 11 C -0.198 4.198 12 C -0.063 4.063 13 C -0.197 4.197 14 C 0.174 3.826 15 O -0.214 6.214 16 C -0.391 4.391 17 H 0.105 0.895 18 C 0.064 3.936 19 N -0.878 5.878 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.239 4.239 25 N -0.320 5.320 26 O 0.136 5.864 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.185 0.815 33 H 0.415 0.585 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.280 0.720 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.753 -4.664 -3.417 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.068 3.932 4 C -0.105 4.105 5 C -0.173 4.173 6 C -0.184 4.184 7 C 0.382 3.618 8 O -0.373 6.373 9 N -0.296 5.296 10 C 0.084 3.916 11 C -0.218 4.218 12 C -0.082 4.082 13 C -0.216 4.216 14 C 0.121 3.879 15 O -0.118 6.118 16 C -0.466 4.466 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.261 4.261 25 N -0.018 5.018 26 O 0.056 5.944 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.202 0.798 33 H 0.251 0.749 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.396 -4.763 -3.223 24.093 hybrid contribution 0.047 0.522 -0.326 0.617 sum -23.350 -4.242 -3.549 23.996 Atomic orbital electron populations 1.22832 0.79613 1.03552 1.00498 1.87987 1.20618 1.26240 1.95578 1.20653 0.82941 0.86242 1.03356 1.23926 0.95095 1.05764 0.85717 1.22485 0.89572 1.03634 1.01626 1.23472 0.96766 1.08117 0.90090 1.16820 0.81358 0.77164 0.86452 1.90826 1.86075 1.48263 1.12166 1.43270 1.05149 1.69967 1.11175 1.17386 0.83895 0.96494 0.93850 1.20603 0.98799 1.04517 0.97930 1.20525 0.91334 0.98003 0.98336 1.20274 0.98761 1.04390 0.98202 1.18799 0.85223 0.91816 0.92050 1.83617 1.27975 1.63628 1.36621 1.20729 1.02509 1.31450 0.91926 0.87779 1.24474 0.98840 0.94639 0.96032 1.69649 1.31230 1.32426 1.18312 0.86171 0.80954 0.79837 0.79897 1.19883 1.20758 1.18251 1.20943 0.91379 1.08028 1.05723 1.74234 0.97320 1.14636 1.15591 1.84799 1.11310 1.65007 1.33235 0.93478 0.88990 0.93430 0.90222 0.89192 0.79762 0.74897 0.86114 0.86212 0.86189 0.91017 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.87 10.69 -35.23 -0.38 -3.25 16 3 C 0.15 0.82 6.50 36.01 0.23 1.06 16 4 C -0.04 -0.39 7.10 -35.35 -0.25 -0.64 16 5 C -0.15 -1.62 10.92 -39.07 -0.43 -2.04 16 6 C -0.03 -0.35 7.19 -82.53 -0.59 -0.95 16 7 C 0.60 9.81 7.58 -12.13 -0.09 9.72 16 8 O -0.50 -9.27 14.67 5.37 0.08 -9.19 16 9 N -0.65 -11.01 5.33 -10.61 -0.06 -11.07 16 10 C 0.18 3.45 6.26 -83.75 -0.52 2.92 16 11 C -0.20 -3.72 8.65 -39.34 -0.34 -4.06 16 12 C -0.06 -1.13 10.03 -39.64 -0.40 -1.52 16 13 C -0.20 -3.93 9.99 -39.35 -0.39 -4.32 16 14 C 0.17 4.04 6.64 -39.13 -0.26 3.78 16 15 O -0.21 -5.61 8.58 0.04 0.00 -5.61 16 16 C -0.39 -10.95 9.90 30.88 0.31 -10.65 16 17 H 0.10 2.97 5.53 -52.48 -0.29 2.68 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.29 13.96 55.48 0.77 -24.51 16 20 Si 0.91 21.64 28.62 -169.99 -4.86 16.77 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.24 -5.24 9.05 -39.20 -0.35 -5.60 16 25 N -0.32 -4.26 11.85 33.29 0.39 -3.86 16 26 O 0.14 1.53 11.18 17.23 0.19 1.72 16 27 H 0.05 0.12 8.14 -51.93 -0.42 -0.31 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.19 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.41 6.30 8.58 -40.82 -0.35 5.95 16 34 H 0.12 2.19 6.45 -52.49 -0.34 1.86 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.14 3.11 5.71 -52.49 -0.30 2.81 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -32.85 341.98 -4.58 -37.42 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.80 Total: 5.80 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.08 Total: -9.38 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 1.11 Total: -39.44 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.10 Total: -16.33 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.85 -4.58 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.987 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds