Wall clock time and date at job start Tue Mar 31 2020 11:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99770 * 2 1 4 4 C 1.50701 * 109.46875 * 180.02562 * 3 2 1 5 5 C 1.35313 * 126.66584 * 89.99575 * 4 3 2 6 6 C 1.42286 * 103.92358 * 180.20447 * 5 4 3 7 7 C 1.48289 * 126.94011 * 179.77886 * 6 5 4 8 8 O 1.21500 * 120.00439 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99726 * 180.02562 * 7 6 5 10 10 C 1.39833 * 119.99885 * 174.78700 * 9 7 6 11 11 C 1.38983 * 120.04012 * 326.13437 * 10 9 7 12 12 C 1.38151 * 120.06681 * 179.76567 * 11 10 9 13 13 C 1.38173 * 120.14064 * 0.51378 * 12 11 10 14 14 C 1.38918 * 120.07493 * 359.73887 * 13 12 11 15 15 O 1.35750 * 120.03168 * 179.97438 * 14 13 12 16 16 C 1.34833 * 116.99934 * 185.92578 * 15 14 13 17 17 H 1.08004 * 119.99599 * 5.40373 * 16 15 14 18 18 C 1.38648 * 120.00113 * 185.40223 * 16 15 14 19 19 N 1.31559 * 120.00229 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47178 * 90.00227 * 20 18 16 22 22 H 1.48502 * 109.46875 * 210.00294 * 20 18 16 23 23 H 1.48505 * 109.47197 * 329.99887 * 20 18 16 24 24 C 1.38741 * 120.03805 * 146.40977 * 10 9 7 25 25 N 1.31002 * 106.11441 * 359.63890 * 6 5 4 26 26 O 1.20898 * 111.44195 * 0.38814 * 25 6 5 27 27 H 1.09001 * 109.46748 * 59.99883 * 1 2 3 28 28 H 1.09001 * 109.46508 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46757 * 299.99649 * 1 2 3 30 30 H 1.08996 * 109.47015 * 60.00247 * 3 2 1 31 31 H 1.08995 * 109.47247 * 299.99812 * 3 2 1 32 32 H 1.08005 * 128.03737 * 359.95143 * 5 4 3 33 33 H 0.97000 * 120.00710 * 354.78832 * 9 7 6 34 34 H 1.07997 * 119.96351 * 0.02562 * 11 10 9 35 35 H 1.07995 * 119.92962 * 180.25217 * 12 11 10 36 36 H 1.08000 * 119.96204 * 179.76530 * 13 12 11 37 37 H 0.97001 * 119.99601 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.07322 * 359.95918 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3176 1.1228 -1.0864 6 6 5.6256 1.0142 -0.5369 7 6 6.9008 0.9066 -1.2860 8 8 6.8936 0.9061 -2.5009 9 7 8.0679 0.8095 -0.6190 10 6 9.2588 0.5985 -1.3209 11 6 9.2577 -0.1730 -2.4769 12 6 10.4331 -0.3777 -3.1735 13 6 11.6148 0.1746 -2.7178 14 6 11.6236 0.9424 -1.5602 15 8 12.7852 1.4842 -1.1130 16 6 12.7481 2.1139 0.0787 17 1 11.8455 2.0948 0.6716 18 6 13.8685 2.7857 0.5430 19 7 13.8325 3.3997 1.7060 20 14 15.4293 2.8193 -0.4829 21 1 15.4029 3.9979 -1.3858 22 1 16.6094 2.9091 0.4141 23 1 15.5163 1.5773 -1.2925 24 6 10.4438 1.1545 -0.8610 25 7 5.4758 1.0316 0.7645 26 8 4.3108 1.1236 1.0741 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.0330 1.1447 -2.1280 33 1 8.0819 0.8858 0.3479 34 1 8.3364 -0.6094 -2.8333 35 1 10.4290 -0.9743 -4.0737 36 1 12.5327 0.0096 -3.2625 37 1 14.6166 3.8694 2.0309 38 1 10.4481 1.7513 0.0391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090253581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:14 Heat of formation + Delta-G solvation = -25.470435 kcal Electronic energy + Delta-G solvation = -24840.914616 eV Core-core repulsion = 20845.798315 eV Total energy + Delta-G solvation = -3995.116301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.36080 -41.75490 -40.52710 -38.91602 -38.33946 -35.95836 -35.25925 -34.44053 -33.82408 -31.19549 -30.54072 -28.75294 -27.34566 -26.61873 -26.22823 -24.09355 -23.50797 -23.12341 -21.26722 -19.97883 -19.57972 -19.13779 -18.94882 -18.14048 -17.34840 -17.22462 -17.02459 -16.72106 -16.54526 -16.27340 -16.11138 -15.74320 -15.52573 -15.38960 -14.87894 -14.74521 -14.26999 -14.07276 -13.85621 -13.41846 -13.24893 -12.94163 -12.76064 -12.69042 -12.54768 -12.39307 -12.11772 -11.75225 -11.70594 -11.50478 -11.31884 -10.88300 -10.81546 -10.70785 -9.51762 -9.04782 -8.52312 -6.25981 -0.29073 0.24646 0.51577 0.60233 1.31763 1.35993 1.51094 1.53460 1.76627 1.81650 2.27188 2.61515 2.72875 2.94667 3.02755 3.06027 3.38682 3.72497 3.87760 4.01702 4.06807 4.21838 4.32190 4.39743 4.47933 4.52213 4.53278 4.58912 4.67085 4.74039 4.85271 4.96879 5.24128 5.24914 5.35781 5.54569 5.69242 5.81583 6.06527 6.10015 6.13767 6.62593 6.81408 6.82207 7.52666 8.58986 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.002417 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.589206 B =11580.373782 C =12548.320960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.143 3.857 4 C -0.025 4.025 5 C -0.156 4.156 6 C -0.049 4.049 7 C 0.601 3.399 8 O -0.523 6.523 9 N -0.652 5.652 10 C 0.175 3.825 11 C -0.190 4.190 12 C -0.048 4.048 13 C -0.194 4.194 14 C 0.141 3.859 15 O -0.236 6.236 16 C -0.401 4.401 17 H 0.080 0.920 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.253 4.253 25 N -0.339 5.339 26 O 0.143 5.857 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.204 0.796 33 H 0.420 0.580 34 H 0.134 0.866 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.285 0.715 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.721 -5.520 -5.378 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.067 3.933 4 C -0.089 4.089 5 C -0.178 4.178 6 C -0.206 4.206 7 C 0.387 3.613 8 O -0.397 6.397 9 N -0.297 5.297 10 C 0.081 3.919 11 C -0.210 4.210 12 C -0.066 4.066 13 C -0.213 4.213 14 C 0.091 3.909 15 O -0.143 6.143 16 C -0.477 4.477 17 H 0.097 0.903 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.274 4.274 25 N -0.036 5.036 26 O 0.060 5.940 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.221 0.779 33 H 0.257 0.743 34 H 0.152 0.848 35 H 0.184 0.816 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.399 -5.638 -5.188 26.530 hybrid contribution 0.282 0.660 0.225 0.752 sum -25.117 -4.978 -4.963 26.082 Atomic orbital electron populations 1.23013 0.77817 1.04224 1.01904 1.87927 1.22587 1.27171 1.95911 1.20992 0.80186 0.86191 1.05956 1.24608 0.96535 1.03345 0.84365 1.22746 0.88239 1.03837 1.02975 1.23257 0.96518 1.10290 0.90569 1.17108 0.81769 0.76019 0.86367 1.90791 1.86551 1.49302 1.13065 1.43307 1.04833 1.70091 1.11486 1.17475 0.84019 0.96082 0.94296 1.20949 0.99843 1.03149 0.97098 1.21023 0.89718 0.96773 0.99089 1.20618 1.00590 1.03193 0.96902 1.19355 0.84890 0.92951 0.93679 1.83559 1.29515 1.65229 1.35996 1.20665 1.02049 1.32037 0.92918 0.90281 1.25305 1.01972 0.94339 0.97207 1.69732 1.32494 1.33983 1.19915 0.85207 0.77293 0.79746 0.78441 1.19223 1.19193 1.18273 1.20887 0.92447 1.08726 1.05380 1.74242 0.98516 1.15230 1.15565 1.84772 1.10934 1.64193 1.34060 0.91940 0.88817 0.92131 0.87945 0.86242 0.77941 0.74277 0.84847 0.81553 0.84167 0.90515 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.42 -5.16 10.69 -148.98 -1.59 -6.75 16 3 C 0.14 1.17 6.50 71.24 0.46 1.63 16 4 C -0.03 -0.41 7.10 25.01 0.18 -0.24 16 5 C -0.16 -3.08 10.92 22.60 0.25 -2.83 16 6 C -0.05 -1.33 7.19 42.95 0.31 -1.02 16 7 C 0.60 19.62 7.58 86.92 0.66 20.28 16 8 O -0.52 -18.89 14.67 -3.71 -0.05 -18.94 16 9 N -0.65 -22.44 5.33 -305.78 -1.63 -24.07 16 10 C 0.17 6.86 6.26 38.16 0.24 7.10 16 11 C -0.19 -6.77 8.65 22.43 0.19 -6.58 16 12 C -0.05 -1.55 10.03 22.23 0.22 -1.33 16 13 C -0.19 -7.42 9.99 22.42 0.22 -7.19 16 14 C 0.14 6.68 6.64 22.56 0.15 6.83 16 15 O -0.24 -12.77 8.58 -22.77 -0.20 -12.96 16 16 C -0.40 -23.58 9.90 67.92 0.67 -22.91 16 17 H 0.08 4.89 5.53 -2.91 -0.02 4.87 16 18 C 0.01 0.61 5.49 84.83 0.47 1.07 16 19 N -0.92 -55.00 13.96 21.61 0.30 -54.70 16 20 Si 0.97 45.28 28.62 68.60 1.96 47.24 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 C -0.25 -11.52 9.05 22.52 0.20 -11.32 16 25 N -0.34 -8.94 11.85 -49.51 -0.59 -9.52 16 26 O 0.14 3.04 11.18 71.82 0.80 3.85 16 27 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.42 13.36 8.58 -92.71 -0.80 12.57 16 34 H 0.13 4.51 6.45 -2.91 -0.02 4.49 16 35 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.29 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.12 5.73 5.71 -2.91 -0.02 5.72 16 Total: -1.00 -73.83 341.98 4.82 -69.01 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.34 Total: 21.97 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.48 Total: -15.11 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.92 Total: -88.30 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.04 Total: -34.81 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.96 Total: 47.24 kcal Total: -73.83 4.82 -69.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.536 kcal (2) G-P(sol) polarization free energy of solvation -73.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds