Wall clock time and date at job start Tue Mar 31 2020 12:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.36936 * 120.00130 * 264.11143 * 3 2 1 5 5 H 1.08003 * 120.00254 * 188.01642 * 4 3 2 6 6 C 1.38809 * 119.99771 * 8.02300 * 4 3 2 7 7 N 1.31619 * 120.00384 * 25.56420 * 6 4 3 8 8 Si 1.86800 * 120.00007 * 205.56132 * 6 4 3 9 9 H 1.48499 * 109.47002 * 84.98791 * 8 6 4 10 10 H 1.48502 * 109.47320 * 204.98879 * 8 6 4 11 11 H 1.48504 * 109.47073 * 324.98958 * 8 6 4 12 12 C 1.46508 * 119.99933 * 84.11380 * 3 2 1 13 13 C 1.50698 * 109.46804 * 269.99646 * 12 3 2 14 14 N 1.30979 * 126.43699 * 90.00754 * 13 12 3 15 15 C 1.35216 * 105.58199 * 180.02562 * 14 13 12 16 16 C 1.48420 * 126.41754 * 179.97438 * 15 14 13 17 17 C 1.39336 * 120.11554 * 359.72364 * 16 15 14 18 18 C 1.38024 * 119.87189 * 179.69897 * 17 16 15 19 19 C 1.38320 * 120.12311 * 0.60096 * 18 17 16 20 20 N 1.48015 * 119.88006 * 179.69926 * 19 18 17 21 21 O 1.21803 * 119.99916 * 179.97438 * 20 19 18 22 22 O 1.21799 * 119.99925 * 359.97438 * 20 19 18 23 23 C 1.38323 * 120.23646 * 359.67576 * 19 18 17 24 24 C 1.38007 * 120.12670 * 0.02562 * 23 19 18 25 25 N 1.30760 * 107.16921 * 359.97438 * 15 14 13 26 26 O 1.21293 * 110.10294 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47327 * 60.00003 * 1 2 3 28 28 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47433 * 299.99914 * 1 2 3 30 30 H 1.08998 * 109.47433 * 240.00086 * 2 1 3 31 31 H 1.09001 * 109.46757 * 119.99493 * 2 1 3 32 32 H 0.97000 * 120.00242 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.46939 * 150.00225 * 12 3 2 34 34 H 1.08996 * 109.47134 * 29.99630 * 12 3 2 35 35 H 1.07998 * 120.06228 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.93420 * 180.29727 * 18 17 16 37 37 H 1.08010 * 119.93250 * 179.97438 * 23 19 18 38 38 H 1.08005 * 120.06746 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3612 1.9862 -1.1796 5 1 2.8414 2.9536 -1.1708 6 6 2.0916 1.3562 -2.3868 7 7 1.1109 0.4821 -2.4684 8 14 3.1207 1.7488 -3.8955 9 1 4.3445 0.9076 -3.8926 10 1 2.3300 1.4680 -5.1208 11 1 3.5057 3.1828 -3.8726 12 6 2.1398 2.1152 1.2621 13 6 0.8490 2.8380 1.5490 14 7 -0.1725 2.3688 2.2213 15 6 -1.0929 3.3594 2.2219 16 6 -2.4331 3.3166 2.8582 17 6 -2.8501 2.1713 3.5334 18 6 -4.0950 2.1392 4.1286 19 6 -4.9330 3.2365 4.0450 20 7 -6.2695 3.1938 4.6796 21 8 -7.0089 4.1590 4.6077 22 8 -6.6299 2.1934 5.2736 23 6 -4.5261 4.3738 3.3710 24 6 -3.2810 4.4191 2.7774 25 7 -0.5810 4.3622 1.5570 26 8 0.5316 4.0787 1.1660 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 0.9223 0.0422 -3.3120 33 1 2.9517 2.8383 1.1851 34 1 2.3518 1.4154 2.0704 35 1 -2.1988 1.3121 3.5948 36 1 -4.4174 1.2538 4.6564 37 1 -5.1846 5.2278 3.3084 38 1 -2.9642 5.3078 2.2517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121035311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:42 Heat of formation + Delta-G solvation = 125.379688 kcal Electronic energy + Delta-G solvation = -25787.229309 eV Core-core repulsion = 21830.947111 eV Total energy + Delta-G solvation = -3956.282198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -45.06099 -42.35646 -39.68298 -36.74848 -36.63118 -35.46173 -33.25526 -31.85519 -31.78866 -30.96984 -29.63338 -27.12030 -26.74632 -24.13960 -23.81061 -23.34864 -22.39536 -21.33273 -20.48666 -19.58295 -18.81338 -17.73403 -17.69171 -17.62872 -16.92603 -16.11871 -15.61093 -15.20697 -15.03847 -14.27863 -14.11170 -13.89966 -13.78978 -13.68908 -13.17092 -12.45742 -12.14626 -12.00290 -11.89689 -11.73577 -11.71205 -11.60333 -11.37477 -11.32022 -11.05570 -10.96454 -10.72906 -10.66201 -10.39595 -10.21706 -9.87105 -9.73174 -9.55665 -9.13902 -8.66739 -7.37952 -6.11304 -3.44452 -0.54011 0.65596 0.91022 1.18373 1.69152 2.48561 3.20774 3.23482 3.30433 3.31881 3.34345 3.53307 3.99758 4.17694 4.23859 4.24367 4.57332 4.75284 4.98731 5.03955 5.11768 5.18376 5.34401 5.44810 5.55936 5.79416 5.89816 5.92498 6.01300 6.16379 6.21219 6.38249 6.40097 6.72804 6.90889 6.94752 7.39890 7.44960 7.53141 7.87377 7.99269 8.51549 8.86251 9.44242 9.86104 10.90270 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002827 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.558872 B = 9903.697170 C =10103.264140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 N -0.561 5.561 4 C -0.275 4.275 5 H 0.085 0.915 6 C 0.010 3.990 7 N -0.881 5.881 8 Si 0.910 3.090 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.219 3.781 13 C 0.197 3.803 14 N -0.490 5.490 15 C 0.174 3.826 16 C 0.058 3.942 17 C -0.080 4.080 18 C -0.054 4.054 19 C -0.043 4.043 20 N 0.030 4.970 21 O -0.163 6.163 22 O -0.160 6.160 23 C -0.054 4.054 24 C -0.092 4.092 25 N -0.381 5.381 26 O 0.082 5.918 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.032 0.968 30 H 0.093 0.907 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 3.599 11.094 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 N -0.280 5.280 4 C -0.403 4.403 5 H 0.103 0.897 6 C -0.190 4.190 7 N -0.523 5.523 8 Si 0.738 3.262 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.086 3.914 13 C -0.026 4.026 14 N -0.224 5.224 15 C -0.095 4.095 16 C 0.056 3.944 17 C -0.100 4.100 18 C -0.073 4.073 19 C -0.126 4.126 20 N 0.549 4.451 21 O -0.378 6.378 22 O -0.376 6.376 23 C -0.073 4.073 24 C -0.112 4.112 25 N -0.090 5.090 26 O 0.022 5.978 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.176 0.824 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.588 3.931 10.684 12.274 hybrid contribution -0.163 0.129 -0.907 0.930 sum -4.751 4.060 9.777 11.604 Atomic orbital electron populations 1.22329 0.98777 0.98869 1.01934 1.21053 0.92948 0.83283 0.99091 1.44929 1.71954 1.09575 1.01510 1.19461 1.32989 1.04780 0.83106 0.89697 1.24915 0.97044 0.99120 0.97965 1.70200 1.26014 1.30360 1.25709 0.86196 0.80081 0.78344 0.81552 1.20944 1.21715 1.20220 1.20204 0.86298 0.93797 0.91150 1.32259 1.01627 0.81158 0.87529 1.71923 1.00927 1.27471 1.22075 1.23568 0.96825 0.88207 1.00924 1.17804 0.88533 0.94239 0.93787 1.21314 0.95033 0.98458 0.95196 1.21004 0.92270 0.97295 0.96748 1.21239 0.85234 0.99469 1.06691 1.43616 1.02582 1.00038 0.98839 1.94536 1.51200 1.27351 1.64714 1.94540 1.79074 1.22668 1.41345 1.20927 0.96367 0.96708 0.93309 1.21237 0.91957 0.99097 0.98945 1.74744 0.96112 1.23409 1.14736 1.85291 1.23552 1.31903 1.57030 0.89919 0.95881 0.94907 0.88921 0.96720 0.93124 0.89307 0.88858 0.82130 0.82292 0.82397 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.58 37.16 0.36 -3.14 16 2 C 0.16 3.46 5.64 -4.04 -0.02 3.43 16 3 N -0.56 -12.05 2.52 -174.61 -0.44 -12.49 16 4 C -0.27 -6.55 9.70 -15.06 -0.15 -6.70 16 5 H 0.09 1.96 7.94 -52.48 -0.42 1.55 16 6 C 0.01 0.24 4.89 -17.43 -0.09 0.16 16 7 N -0.88 -22.64 8.61 55.49 0.48 -22.16 16 8 Si 0.91 19.72 29.62 -169.99 -5.04 14.69 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 C 0.22 3.73 6.33 -5.19 -0.03 3.70 16 13 C 0.20 3.56 7.58 -12.99 -0.10 3.46 16 14 N -0.49 -8.66 9.52 -9.88 -0.09 -8.76 16 15 C 0.17 2.92 7.80 -156.12 -1.22 1.71 16 16 C 0.06 0.79 5.88 -104.89 -0.62 0.17 16 17 C -0.08 -0.93 9.70 -39.25 -0.38 -1.31 16 18 C -0.05 -0.57 9.54 -39.63 -0.38 -0.95 16 19 C -0.04 -0.49 6.85 -79.89 -0.55 -1.04 16 20 N 0.03 0.39 4.45 33.99 0.15 0.54 16 21 O -0.16 -2.19 18.44 -29.46 -0.54 -2.74 16 22 O -0.16 -2.17 18.44 -29.46 -0.54 -2.71 16 23 C -0.05 -0.56 9.54 -39.63 -0.38 -0.94 16 24 C -0.09 -1.05 9.69 -39.26 -0.38 -1.43 16 25 N -0.38 -6.83 11.86 30.97 0.37 -6.46 16 26 O 0.08 1.54 11.29 18.04 0.20 1.74 16 27 H 0.08 2.11 6.33 -51.93 -0.33 1.78 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.68 5.90 -51.93 -0.31 0.37 16 30 H 0.09 2.23 5.85 -51.93 -0.30 1.93 16 31 H 0.01 0.28 7.98 -51.93 -0.41 -0.13 16 32 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.09 1.32 8.03 -51.93 -0.42 0.91 16 34 H 0.09 1.37 7.95 -51.93 -0.41 0.96 16 35 H 0.16 1.81 7.88 -52.49 -0.41 1.39 16 36 H 0.16 1.37 7.60 -52.48 -0.40 0.97 16 37 H 0.16 1.33 7.60 -52.48 -0.40 0.93 16 38 H 0.15 1.64 7.87 -52.48 -0.41 1.23 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -27.30 336.19 -8.10 -35.40 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.78 Total: 0.76 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.93 Total: -2.89 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.46 Total: -49.32 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -0.88 Total: -3.71 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.04 Total: 14.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.30 -8.10 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121035311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.781 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds