Wall clock time and date at job start Tue Mar 31 2020 12:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.36936 * 120.00130 * 264.11143 * 3 2 1 5 5 H 1.08003 * 120.00254 * 188.01642 * 4 3 2 6 6 C 1.38809 * 119.99771 * 8.02300 * 4 3 2 7 7 N 1.31619 * 120.00384 * 25.56420 * 6 4 3 8 8 Si 1.86800 * 120.00007 * 205.56132 * 6 4 3 9 9 H 1.48499 * 109.47002 * 84.98791 * 8 6 4 10 10 H 1.48502 * 109.47320 * 204.98879 * 8 6 4 11 11 H 1.48504 * 109.47073 * 324.98958 * 8 6 4 12 12 C 1.46508 * 119.99933 * 84.11380 * 3 2 1 13 13 C 1.50698 * 109.46804 * 269.99646 * 12 3 2 14 14 N 1.30979 * 126.43699 * 90.00754 * 13 12 3 15 15 C 1.35216 * 105.58199 * 180.02562 * 14 13 12 16 16 C 1.48420 * 126.41754 * 179.97438 * 15 14 13 17 17 C 1.39336 * 120.11554 * 359.72364 * 16 15 14 18 18 C 1.38024 * 119.87189 * 179.69897 * 17 16 15 19 19 C 1.38320 * 120.12311 * 0.60096 * 18 17 16 20 20 N 1.48015 * 119.88006 * 179.69926 * 19 18 17 21 21 O 1.21803 * 119.99916 * 179.97438 * 20 19 18 22 22 O 1.21799 * 119.99925 * 359.97438 * 20 19 18 23 23 C 1.38323 * 120.23646 * 359.67576 * 19 18 17 24 24 C 1.38007 * 120.12670 * 0.02562 * 23 19 18 25 25 N 1.30760 * 107.16921 * 359.97438 * 15 14 13 26 26 O 1.21293 * 110.10294 * 359.97438 * 25 15 14 27 27 H 1.09001 * 109.47327 * 60.00003 * 1 2 3 28 28 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47433 * 299.99914 * 1 2 3 30 30 H 1.08998 * 109.47433 * 240.00086 * 2 1 3 31 31 H 1.09001 * 109.46757 * 119.99493 * 2 1 3 32 32 H 0.97000 * 120.00242 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.46939 * 150.00225 * 12 3 2 34 34 H 1.08996 * 109.47134 * 29.99630 * 12 3 2 35 35 H 1.07998 * 120.06228 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.93420 * 180.29727 * 18 17 16 37 37 H 1.08010 * 119.93250 * 179.97438 * 23 19 18 38 38 H 1.08005 * 120.06746 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3612 1.9862 -1.1796 5 1 2.8414 2.9536 -1.1708 6 6 2.0916 1.3562 -2.3868 7 7 1.1109 0.4821 -2.4684 8 14 3.1207 1.7488 -3.8955 9 1 4.3445 0.9076 -3.8926 10 1 2.3300 1.4680 -5.1208 11 1 3.5057 3.1828 -3.8726 12 6 2.1398 2.1152 1.2621 13 6 0.8490 2.8380 1.5490 14 7 -0.1725 2.3688 2.2213 15 6 -1.0929 3.3594 2.2219 16 6 -2.4331 3.3166 2.8582 17 6 -2.8501 2.1713 3.5334 18 6 -4.0950 2.1392 4.1286 19 6 -4.9330 3.2365 4.0450 20 7 -6.2695 3.1938 4.6796 21 8 -7.0089 4.1590 4.6077 22 8 -6.6299 2.1934 5.2736 23 6 -4.5261 4.3738 3.3710 24 6 -3.2810 4.4191 2.7774 25 7 -0.5810 4.3622 1.5570 26 8 0.5316 4.0787 1.1660 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 0.9223 0.0422 -3.3120 33 1 2.9517 2.8383 1.1851 34 1 2.3518 1.4154 2.0704 35 1 -2.1988 1.3121 3.5948 36 1 -4.4174 1.2538 4.6564 37 1 -5.1846 5.2278 3.3084 38 1 -2.9642 5.3078 2.2517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121035311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:41 Heat of formation + Delta-G solvation = 111.996488 kcal Electronic energy + Delta-G solvation = -25787.809648 eV Core-core repulsion = 21830.947111 eV Total energy + Delta-G solvation = -3956.862537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.45055 -43.34702 -40.62964 -38.24034 -37.76336 -36.80547 -34.62241 -33.27572 -32.70541 -32.39133 -31.25868 -28.33263 -28.16269 -25.60202 -25.13858 -24.48102 -23.56328 -22.76582 -21.93644 -20.53289 -19.81153 -19.17067 -18.90046 -18.70008 -18.60269 -17.30342 -17.05525 -16.46121 -15.96685 -15.68842 -15.52964 -15.39723 -14.99083 -14.67973 -14.29645 -13.99205 -13.76735 -13.55418 -13.19680 -13.07066 -12.86051 -12.72846 -12.68467 -12.54416 -12.40577 -12.38867 -12.35676 -12.14595 -11.98321 -11.82355 -11.48582 -11.16974 -10.59161 -10.46134 -10.32098 -9.11386 -7.92414 -5.27124 -1.54626 -0.21107 -0.17334 0.21870 0.36776 1.25562 1.50381 1.54949 1.60096 1.97179 2.20106 2.32390 2.50114 2.87015 3.22809 3.26475 3.34046 3.57292 3.63538 3.73983 3.97855 4.15217 4.42650 4.50702 4.51870 4.58356 4.67938 4.72131 4.80265 4.96221 4.99000 5.00006 5.04914 5.18458 5.22732 5.27006 5.59251 5.75798 6.06289 6.23717 6.40640 7.06207 7.13114 7.73312 8.11287 9.07955 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002827 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.558872 B = 9903.697170 C =10103.264140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.165 3.835 3 N -0.579 5.579 4 C -0.275 4.275 5 H 0.089 0.911 6 C -0.039 4.039 7 N -0.909 5.909 8 Si 0.962 3.038 9 H -0.282 1.282 10 H -0.304 1.304 11 H -0.271 1.271 12 C 0.219 3.781 13 C 0.196 3.804 14 N -0.493 5.493 15 C 0.180 3.820 16 C 0.033 3.967 17 C -0.075 4.075 18 C -0.044 4.044 19 C -0.046 4.046 20 N 0.030 4.970 21 O -0.171 6.171 22 O -0.170 6.170 23 C -0.044 4.044 24 C -0.086 4.086 25 N -0.394 5.394 26 O 0.066 5.934 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.249 0.751 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 4.061 12.717 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 N -0.298 5.298 4 C -0.404 4.404 5 H 0.107 0.893 6 C -0.236 4.236 7 N -0.553 5.553 8 Si 0.791 3.209 9 H -0.209 1.209 10 H -0.232 1.232 11 H -0.196 1.196 12 C 0.087 3.913 13 C -0.027 4.027 14 N -0.227 5.227 15 C -0.090 4.090 16 C 0.031 3.969 17 C -0.095 4.095 18 C -0.063 4.063 19 C -0.130 4.130 20 N 0.547 4.453 21 O -0.385 6.385 22 O -0.384 6.384 23 C -0.062 4.062 24 C -0.106 4.106 25 N -0.105 5.105 26 O 0.009 5.991 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.742 4.418 12.329 13.929 hybrid contribution -0.195 0.062 -1.213 1.230 sum -4.937 4.480 11.116 12.961 Atomic orbital electron populations 1.22140 0.99218 0.98826 1.00142 1.20899 0.92462 0.83715 0.98902 1.44871 1.72782 1.10017 1.02124 1.19699 1.32214 1.04473 0.84040 0.89342 1.25496 0.98076 0.99933 1.00121 1.70356 1.27459 1.32077 1.25417 0.85375 0.78607 0.78205 0.78756 1.20891 1.23182 1.19635 1.20427 0.85973 0.94707 0.90182 1.32124 1.01562 0.81342 0.87677 1.71925 1.01017 1.27571 1.22206 1.24094 0.97701 0.87396 0.99823 1.17955 0.87700 0.95881 0.95330 1.21335 0.95401 0.97969 0.94778 1.21167 0.91412 0.97703 0.95985 1.21406 0.84613 1.00199 1.06754 1.43788 1.02947 0.99833 0.98699 1.94534 1.51681 1.27396 1.64911 1.94538 1.79419 1.22755 1.41725 1.21104 0.96008 0.97036 0.92090 1.21286 0.91898 0.98739 0.98708 1.74736 0.95920 1.24136 1.15696 1.85261 1.24099 1.32336 1.57385 0.93805 0.95066 0.94238 0.91830 0.93989 0.94159 0.87058 0.86010 0.81712 0.80259 0.80285 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.24 9.58 71.98 0.69 -5.55 16 2 C 0.16 6.99 5.64 86.38 0.49 7.47 16 3 N -0.58 -24.25 2.52 -706.35 -1.78 -26.03 16 4 C -0.28 -13.02 9.70 84.03 0.81 -12.21 16 5 H 0.09 4.02 7.94 -2.91 -0.02 4.00 16 6 C -0.04 -1.97 4.89 84.86 0.41 -1.55 16 7 N -0.91 -48.00 8.61 21.65 0.19 -47.82 16 8 Si 0.96 41.13 29.62 68.60 2.03 43.17 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.22 6.98 6.33 85.63 0.54 7.52 16 13 C 0.20 6.78 7.58 88.36 0.67 7.45 16 14 N -0.49 -16.63 9.52 -302.49 -2.88 -19.51 16 15 C 0.18 5.79 7.80 137.30 1.07 6.86 16 16 C 0.03 0.84 5.88 -20.04 -0.12 0.72 16 17 C -0.07 -1.58 9.70 22.48 0.22 -1.36 16 18 C -0.04 -0.81 9.54 22.24 0.21 -0.60 16 19 C -0.05 -0.95 6.85 36.42 0.25 -0.70 16 20 N 0.03 0.72 4.45 -46.37 -0.21 0.51 16 21 O -0.17 -4.27 18.44 18.88 0.35 -3.92 16 22 O -0.17 -4.26 18.44 18.89 0.35 -3.91 16 23 C -0.04 -0.80 9.54 22.23 0.21 -0.58 16 24 C -0.09 -1.79 9.69 22.48 0.22 -1.58 16 25 N -0.39 -13.74 11.86 -59.12 -0.70 -14.45 16 26 O 0.07 2.40 11.29 74.61 0.84 3.25 16 27 H 0.04 2.26 6.33 -2.39 -0.02 2.24 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.60 5.90 -2.39 -0.01 1.59 16 30 H 0.06 3.10 5.85 -2.39 -0.01 3.08 16 31 H 0.04 1.53 7.98 -2.39 -0.02 1.51 16 32 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 33 H 0.11 3.04 8.03 -2.39 -0.02 3.02 16 34 H 0.12 3.19 7.95 -2.39 -0.02 3.17 16 35 H 0.17 3.35 7.88 -2.91 -0.02 3.32 16 36 H 0.18 2.56 7.60 -2.91 -0.02 2.54 16 37 H 0.18 2.49 7.60 -2.91 -0.02 2.47 16 38 H 0.16 3.13 7.87 -2.91 -0.02 3.11 16 Total: -1.00 -58.76 336.19 4.99 -53.77 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.12 Total: 9.04 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.68 Total: 5.91 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -5.38 Total: -107.30 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: 1.54 Total: -4.59 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.17 kcal Total: -58.76 4.99 -53.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121035311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.769 kcal (2) G-P(sol) polarization free energy of solvation -58.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds