Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47183 * 270.00047 * 3 2 1 5 5 H 1.48495 * 109.47111 * 30.00181 * 3 2 1 6 6 H 1.48501 * 109.47078 * 150.00421 * 3 2 1 7 7 C 1.37879 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99449 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00333 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47196 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.35896 * 117.00093 * 179.97438 * 11 10 9 13 13 C 1.38823 * 120.01624 * 359.72044 * 12 11 10 14 14 C 1.38183 * 120.09713 * 179.69998 * 13 12 11 15 15 C 1.38152 * 120.12577 * 0.59906 * 14 13 12 16 16 C 1.38943 * 120.03692 * 359.68014 * 15 14 13 17 17 N 1.39724 * 120.04899 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99781 * 213.38655 * 17 16 15 19 19 O 1.21420 * 120.00329 * 5.27741 * 18 17 16 20 20 C 1.48981 * 120.00197 * 185.27471 * 18 17 16 21 21 N 1.31048 * 125.67800 * 359.69556 * 20 18 17 22 22 C 1.34612 * 109.94523 * 179.83143 * 21 20 18 23 23 O 1.21685 * 125.79187 * 180.15925 * 22 21 20 24 24 N 1.34949 * 108.42463 * 0.42892 * 22 21 20 25 25 H 0.96994 * 126.78148 * 179.72098 * 24 22 21 26 26 N 1.36488 * 125.68340 * 180.02562 * 20 18 17 27 27 H 0.97004 * 126.71994 * 359.97438 * 26 20 18 28 28 C 1.38565 * 120.02141 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47289 * 60.00120 * 9 7 2 31 31 H 1.09002 * 109.46885 * 300.00270 * 9 7 2 32 32 H 1.08992 * 109.47362 * 59.99603 * 10 9 7 33 33 H 1.09002 * 109.46965 * 299.99660 * 10 9 7 34 34 H 1.08003 * 119.95195 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.94030 * 180.27952 * 14 13 12 36 36 H 1.08006 * 119.98200 * 179.69938 * 15 14 13 37 37 H 0.97000 * 119.99793 * 33.38521 * 17 16 15 38 38 H 1.08005 * 120.06331 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 8 5.4506 -2.6364 -0.0022 12 6 6.0676 -3.8473 -0.0027 13 6 5.3119 -5.0118 0.0027 14 6 5.9375 -6.2438 -0.0039 15 6 7.3169 -6.3211 -0.0035 16 6 8.0786 -5.1591 -0.0031 17 7 9.4736 -5.2369 -0.0032 18 6 10.2008 -4.3017 0.6394 19 8 9.6444 -3.4467 1.2980 20 6 11.6873 -4.3168 0.5418 21 7 12.4003 -5.1872 -0.1301 22 6 13.7100 -4.9025 -0.0047 23 8 14.6250 -5.5235 -0.5124 24 7 13.8364 -3.8150 0.7843 25 1 14.6634 -3.3846 1.0518 26 7 12.5337 -3.4304 1.1424 27 1 12.2844 -2.6810 1.7057 28 6 7.4513 -3.9202 -0.0032 29 1 -0.4850 0.8400 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8745 -0.6799 -0.8911 32 1 3.6579 -3.1497 -0.8924 33 1 3.6587 -3.1509 0.8875 34 1 4.2334 -4.9547 0.0077 35 1 5.3471 -7.1482 -0.0043 36 1 7.8034 -7.2854 -0.0039 37 1 9.9187 -5.9641 -0.4658 38 1 8.0409 -3.0153 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129880420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = 20.861941 kcal Electronic energy + Delta-G solvation = -24692.010050 eV Core-core repulsion = 20731.195622 eV Total energy + Delta-G solvation = -3960.814427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.99463 -40.97204 -39.53209 -37.84279 -37.40030 -35.19210 -33.84909 -33.36265 -31.62645 -31.20301 -30.07930 -29.36551 -26.10509 -25.18964 -23.14899 -22.51775 -22.16621 -21.39860 -20.47568 -20.09712 -18.68405 -17.99164 -17.22744 -17.13316 -16.79221 -16.39740 -15.95899 -15.87555 -15.66852 -15.49338 -15.19334 -14.83362 -14.16126 -13.66361 -13.40954 -13.27293 -13.02381 -12.63150 -12.10596 -12.02852 -11.97211 -11.71597 -11.46817 -11.33702 -11.01916 -10.82155 -10.63200 -10.47992 -10.21222 -10.02265 -9.85361 -9.39540 -9.37746 -8.65342 -8.53679 -8.02409 -6.16193 -4.17300 -0.04951 0.58967 1.17058 1.45665 2.04234 2.09812 2.83513 3.12800 3.26416 3.33913 3.39129 3.51277 3.69408 3.77426 4.31670 4.36572 4.79254 4.83215 5.02524 5.17930 5.18060 5.21329 5.33048 5.44837 5.51346 5.85362 5.87316 5.97702 6.09847 6.33009 6.35089 6.37676 6.51449 6.65033 6.73721 7.03513 7.08004 7.19607 7.28609 7.54191 7.58787 7.82455 8.35529 8.84368 9.44004 10.96191 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002328 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.925598 B =12025.675636 C =13227.472160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.072 3.928 11 O -0.316 6.316 12 C 0.164 3.836 13 C -0.216 4.216 14 C -0.059 4.059 15 C -0.182 4.182 16 C 0.168 3.832 17 N -0.630 5.630 18 C 0.594 3.406 19 O -0.482 6.482 20 C 0.378 3.622 21 N -0.538 5.538 22 C 0.638 3.362 23 O -0.522 6.522 24 N -0.524 5.524 25 H 0.450 0.550 26 N -0.464 5.464 27 H 0.461 0.539 28 C -0.161 4.161 29 H 0.266 0.734 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.428 0.572 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.845 -10.356 2.831 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C -0.002 4.002 11 O -0.229 6.229 12 C 0.116 3.884 13 C -0.235 4.235 14 C -0.078 4.078 15 C -0.202 4.202 16 C 0.075 3.925 17 N -0.276 5.276 18 C 0.374 3.626 19 O -0.352 6.352 20 C 0.098 3.902 21 N -0.293 5.293 22 C 0.335 3.665 23 O -0.392 6.392 24 N -0.286 5.286 25 H 0.300 0.700 26 N -0.200 5.200 27 H 0.311 0.689 28 C -0.182 4.182 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.267 0.733 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 23.992 -10.464 2.490 26.293 hybrid contribution 1.067 1.703 0.672 2.119 sum 25.059 -8.761 3.162 26.734 Atomic orbital electron populations 1.69888 1.06265 1.27237 1.50104 1.24935 0.94765 0.99216 0.94110 0.86762 0.80468 0.83303 0.78765 1.20067 1.21188 1.18732 1.20826 0.88284 0.94942 1.52436 0.90700 1.19590 0.96931 0.90203 0.97954 1.23130 0.74332 1.02090 1.00678 1.86140 1.24209 1.25642 1.86866 1.18854 0.91523 0.85420 0.92618 1.21498 1.01138 0.92195 1.08651 1.20726 0.93466 0.97306 0.96283 1.20683 0.93965 0.96476 1.09066 1.17165 0.80322 0.93846 1.01120 1.42903 1.05083 1.28043 1.51570 1.16775 0.81953 0.83101 0.80753 1.90971 1.69962 1.35959 1.38345 1.23464 0.93332 0.85349 0.88031 1.71945 1.03517 1.26694 1.27108 1.18192 0.88206 0.79839 0.80258 1.91051 1.42736 1.53500 1.51865 1.47066 0.97854 1.32280 1.51381 0.69996 1.44867 0.96622 1.30444 1.48025 0.68853 1.20217 0.92265 0.97384 1.08298 0.92430 0.95362 0.95821 0.92299 0.92296 0.84636 0.85174 0.85407 0.73257 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 10 C 0.07 1.40 4.68 37.16 0.17 1.58 16 11 O -0.32 -5.88 10.13 -19.41 -0.20 -6.08 16 12 C 0.16 2.55 6.68 -39.24 -0.26 2.29 16 13 C -0.22 -2.90 9.04 -39.39 -0.36 -3.26 16 14 C -0.06 -0.62 10.03 -39.63 -0.40 -1.02 16 15 C -0.18 -1.74 9.96 -39.35 -0.39 -2.13 16 16 C 0.17 1.83 6.27 -83.77 -0.53 1.30 16 17 N -0.63 -5.22 5.33 -10.42 -0.06 -5.27 16 18 C 0.59 5.17 7.61 -11.81 -0.09 5.08 16 19 O -0.48 -5.39 14.78 5.44 0.08 -5.31 16 20 C 0.38 2.82 8.05 -154.45 -1.24 1.58 16 21 N -0.54 -5.21 10.90 -13.98 -0.15 -5.37 16 22 C 0.64 6.73 9.33 -86.91 -0.81 5.92 16 23 O -0.52 -7.51 18.05 5.20 0.09 -7.42 16 24 N -0.52 -2.97 7.47 27.65 0.21 -2.76 16 25 H 0.45 1.06 8.96 -182.32 -1.63 -0.57 16 26 N -0.46 -2.22 7.51 32.59 0.24 -1.98 16 27 H 0.46 0.88 8.96 -182.31 -1.63 -0.75 16 28 C -0.16 -2.22 8.59 -39.23 -0.34 -2.56 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 31 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 32 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 33 H 0.06 1.10 7.65 -51.93 -0.40 0.71 16 34 H 0.14 1.80 6.29 -52.48 -0.33 1.47 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.43 2.63 8.53 -40.82 -0.35 2.28 16 38 H 0.14 2.00 6.42 -52.48 -0.34 1.67 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -35.84 337.81 -9.66 -45.50 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.28 Total: -2.45 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.79 Total: -4.45 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 1.02 Total: -41.42 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.02 Total: -18.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.84 -9.66 -45.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129880420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.360 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds