Wall clock time and date at job start Tue Mar 31 2020 12:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47183 * 270.00047 * 3 2 1 5 5 H 1.48495 * 109.47111 * 30.00181 * 3 2 1 6 6 H 1.48501 * 109.47078 * 150.00421 * 3 2 1 7 7 C 1.37879 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99449 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00333 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47196 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.35896 * 117.00093 * 179.97438 * 11 10 9 13 13 C 1.38823 * 120.01624 * 359.72044 * 12 11 10 14 14 C 1.38183 * 120.09713 * 179.69998 * 13 12 11 15 15 C 1.38152 * 120.12577 * 0.59906 * 14 13 12 16 16 C 1.38943 * 120.03692 * 359.68014 * 15 14 13 17 17 N 1.39724 * 120.04899 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99781 * 213.38655 * 17 16 15 19 19 O 1.21420 * 120.00329 * 5.27741 * 18 17 16 20 20 C 1.48981 * 120.00197 * 185.27471 * 18 17 16 21 21 N 1.31048 * 125.67800 * 359.69556 * 20 18 17 22 22 C 1.34612 * 109.94523 * 179.83143 * 21 20 18 23 23 O 1.21685 * 125.79187 * 180.15925 * 22 21 20 24 24 N 1.34949 * 108.42463 * 0.42892 * 22 21 20 25 25 H 0.96994 * 126.78148 * 179.72098 * 24 22 21 26 26 N 1.36488 * 125.68340 * 180.02562 * 20 18 17 27 27 H 0.97004 * 126.71994 * 359.97438 * 26 20 18 28 28 C 1.38565 * 120.02141 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47289 * 60.00120 * 9 7 2 31 31 H 1.09002 * 109.46885 * 300.00270 * 9 7 2 32 32 H 1.08992 * 109.47362 * 59.99603 * 10 9 7 33 33 H 1.09002 * 109.46965 * 299.99660 * 10 9 7 34 34 H 1.08003 * 119.95195 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.94030 * 180.27952 * 14 13 12 36 36 H 1.08006 * 119.98200 * 179.69938 * 15 14 13 37 37 H 0.97000 * 119.99793 * 33.38521 * 17 16 15 38 38 H 1.08005 * 120.06331 * 0.02562 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 8 5.4506 -2.6364 -0.0022 12 6 6.0676 -3.8473 -0.0027 13 6 5.3119 -5.0118 0.0027 14 6 5.9375 -6.2438 -0.0039 15 6 7.3169 -6.3211 -0.0035 16 6 8.0786 -5.1591 -0.0031 17 7 9.4736 -5.2369 -0.0032 18 6 10.2008 -4.3017 0.6394 19 8 9.6444 -3.4467 1.2980 20 6 11.6873 -4.3168 0.5418 21 7 12.4003 -5.1872 -0.1301 22 6 13.7100 -4.9025 -0.0047 23 8 14.6250 -5.5235 -0.5124 24 7 13.8364 -3.8150 0.7843 25 1 14.6634 -3.3846 1.0518 26 7 12.5337 -3.4304 1.1424 27 1 12.2844 -2.6810 1.7057 28 6 7.4513 -3.9202 -0.0032 29 1 -0.4850 0.8400 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8745 -0.6799 -0.8911 32 1 3.6579 -3.1497 -0.8924 33 1 3.6587 -3.1509 0.8875 34 1 4.2334 -4.9547 0.0077 35 1 5.3471 -7.1482 -0.0043 36 1 7.8034 -7.2854 -0.0039 37 1 9.9187 -5.9641 -0.4658 38 1 8.0409 -3.0153 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129880420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:01 Heat of formation + Delta-G solvation = -8.248536 kcal Electronic energy + Delta-G solvation = -24693.272375 eV Core-core repulsion = 20731.195622 eV Total energy + Delta-G solvation = -3962.076752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.66446 -41.81100 -40.61637 -38.75244 -38.38079 -36.06672 -35.35094 -34.50638 -32.91511 -32.28494 -31.19981 -30.38345 -27.21206 -26.60216 -24.08153 -23.37994 -23.20882 -22.47996 -21.67866 -20.81781 -19.79662 -18.89673 -18.63035 -17.86833 -17.79239 -17.29106 -16.98833 -16.90243 -16.80912 -16.60519 -16.27174 -16.08302 -15.63241 -14.83394 -14.52417 -14.45891 -14.31835 -14.04801 -13.43772 -13.36285 -12.79636 -12.74317 -12.66706 -12.49544 -12.14172 -12.10286 -11.91328 -11.86189 -11.64550 -11.44338 -11.35438 -11.22455 -10.80320 -10.07818 -9.48102 -9.04893 -8.33617 -6.39879 -0.72459 0.02043 0.28669 0.50254 1.33531 1.34674 1.36572 1.38173 1.50677 2.09277 2.24021 2.33991 2.61190 2.82065 2.94715 3.01439 3.67163 3.92251 4.14753 4.17046 4.20119 4.25751 4.26580 4.40062 4.53353 4.59998 4.70790 4.87152 5.12074 5.17358 5.19573 5.32411 5.40643 5.50665 5.55793 5.76084 5.84868 6.02315 6.17722 6.46405 6.53134 6.60158 6.65991 6.84666 7.25218 8.81832 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002328 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.925598 B =12025.675636 C =13227.472160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.534 4.534 8 H 0.045 0.955 9 C -0.008 4.008 10 C 0.087 3.913 11 O -0.336 6.336 12 C 0.127 3.873 13 C -0.228 4.228 14 C -0.054 4.054 15 C -0.163 4.163 16 C 0.173 3.827 17 N -0.619 5.619 18 C 0.603 3.397 19 O -0.506 6.506 20 C 0.383 3.617 21 N -0.556 5.556 22 C 0.627 3.373 23 O -0.572 6.572 24 N -0.499 5.499 25 H 0.467 0.533 26 N -0.436 5.436 27 H 0.477 0.523 28 C -0.174 4.174 29 H 0.270 0.730 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.441 0.559 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.959 -10.978 3.257 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.572 4.572 8 H 0.063 0.937 9 C -0.045 4.045 10 C 0.012 3.988 11 O -0.250 6.250 12 C 0.081 3.919 13 C -0.247 4.247 14 C -0.072 4.072 15 C -0.183 4.183 16 C 0.079 3.921 17 N -0.267 5.267 18 C 0.383 3.617 19 O -0.378 6.378 20 C 0.103 3.897 21 N -0.312 5.312 22 C 0.324 3.676 23 O -0.445 6.445 24 N -0.261 5.261 25 H 0.321 0.679 26 N -0.173 5.173 27 H 0.331 0.669 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.283 0.717 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 26.138 -11.053 2.957 28.533 hybrid contribution 0.445 1.781 0.586 1.927 sum 26.584 -9.272 3.543 28.376 Atomic orbital electron populations 1.70020 1.08029 1.28435 1.51640 1.25864 0.95616 1.03242 0.93793 0.85706 0.79433 0.78504 0.79351 1.19027 1.20559 1.17494 1.21108 0.90471 0.93915 1.51711 0.93711 1.19453 0.94397 0.92965 0.97727 1.22695 0.75641 0.99423 1.01003 1.86036 1.22959 1.27862 1.88191 1.19123 0.92303 0.84923 0.95593 1.21599 1.00941 0.92840 1.09306 1.21119 0.94272 0.97175 0.94652 1.21140 0.93574 0.97571 1.05975 1.17224 0.81429 0.93272 1.00166 1.42816 1.04147 1.28326 1.51364 1.16769 0.82215 0.82525 0.80141 1.90978 1.70505 1.36850 1.39445 1.23083 0.92755 0.85640 0.88268 1.71847 1.03460 1.27719 1.28140 1.18237 0.88001 0.80581 0.80807 1.91012 1.43909 1.55422 1.54174 1.46855 0.98677 1.30932 1.49610 0.67890 1.44913 0.95869 1.29865 1.46623 0.66859 1.20231 0.91574 0.98358 1.09273 0.92149 0.95589 0.95605 0.91944 0.92139 0.85253 0.81955 0.81434 0.71737 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.95 43.76 27.47 68.60 1.88 45.64 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.53 -30.10 9.66 25.60 0.25 -29.85 16 8 H 0.04 2.71 7.99 -2.91 -0.02 2.69 16 9 C -0.01 -0.38 4.41 29.85 0.13 -0.24 16 10 C 0.09 3.46 4.68 71.98 0.34 3.80 16 11 O -0.34 -12.74 10.13 -92.38 -0.94 -13.67 16 12 C 0.13 3.95 6.68 22.49 0.15 4.10 16 13 C -0.23 -5.93 9.04 22.40 0.20 -5.73 16 14 C -0.05 -0.97 10.03 22.24 0.22 -0.75 16 15 C -0.16 -2.50 9.96 22.42 0.22 -2.28 16 16 C 0.17 3.34 6.27 38.20 0.24 3.58 16 17 N -0.62 -8.74 5.33 -305.21 -1.63 -10.37 16 18 C 0.60 9.31 7.61 87.13 0.66 9.97 16 19 O -0.51 -10.59 14.78 -3.47 -0.05 -10.64 16 20 C 0.38 4.91 8.05 136.97 1.10 6.01 16 21 N -0.56 -9.88 10.90 -316.45 -3.45 -13.33 16 22 C 0.63 12.49 9.33 179.05 1.67 14.16 16 23 O -0.57 -16.38 18.05 -4.30 -0.08 -16.45 16 24 N -0.50 -4.57 7.47 -184.55 -1.38 -5.94 16 25 H 0.47 1.08 8.96 -213.08 -1.91 -0.83 16 26 N -0.44 -3.07 7.51 -50.81 -0.38 -3.45 16 27 H 0.48 0.43 8.96 -213.07 -1.91 -1.48 16 28 C -0.17 -4.68 8.59 22.50 0.19 -4.48 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 31 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 32 H 0.06 2.39 7.67 -2.39 -0.02 2.37 16 33 H 0.06 2.33 7.65 -2.39 -0.02 2.32 16 34 H 0.13 3.45 6.29 -2.91 -0.02 3.43 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.44 4.12 8.53 -92.71 -0.79 3.33 16 38 H 0.13 3.69 6.42 -2.91 -0.02 3.67 16 Total: -1.00 -80.35 337.81 -3.37 -83.72 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.50 Total: 2.24 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.85 Total: -0.50 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -6.54 Total: -90.34 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.07 Total: -40.77 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -80.35 -3.37 -83.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129880420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.472 kcal (2) G-P(sol) polarization free energy of solvation -80.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds