Wall clock time and date at job start Tue Mar 31 2020 11:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46953 * 2 1 4 4 C 1.36790 * 119.99937 * 265.03045 * 3 2 1 5 5 H 1.07994 * 119.99991 * 136.21550 * 4 3 2 6 6 C 1.39103 * 120.00295 * 316.21260 * 4 3 2 7 7 N 1.31319 * 120.00224 * 163.80543 * 6 4 3 8 8 Si 1.86809 * 119.99957 * 343.80533 * 6 4 3 9 9 H 1.48501 * 109.46771 * 95.30380 * 8 6 4 10 10 H 1.48488 * 109.47142 * 215.30582 * 8 6 4 11 11 H 1.48499 * 109.46727 * 335.30977 * 8 6 4 12 12 C 1.34774 * 119.99786 * 85.03065 * 3 2 1 13 13 O 1.21564 * 119.99836 * 357.53750 * 12 3 2 14 14 C 1.48006 * 119.99779 * 177.53732 * 12 3 2 15 15 C 1.40056 * 120.90032 * 331.06027 * 14 12 3 16 16 C 1.37934 * 119.12574 * 179.77322 * 15 14 12 17 17 N 1.31933 * 120.98351 * 0.52003 * 16 15 14 18 18 C 1.32207 * 121.98771 * 359.73704 * 17 16 15 19 19 O 1.35689 * 119.61498 * 179.97438 * 18 17 16 20 20 C 1.42897 * 117.00564 * 0.02562 * 19 18 17 21 21 C 1.52993 * 109.47267 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47464 * 59.99857 * 21 20 19 23 23 F 1.39902 * 109.46915 * 180.02562 * 21 20 19 24 24 F 1.39901 * 109.47227 * 299.99492 * 21 20 19 25 25 C 1.38849 * 120.76302 * 359.97438 * 18 17 16 26 26 H 1.08999 * 109.47429 * 55.12682 * 1 2 3 27 27 H 1.08994 * 109.46949 * 175.13394 * 1 2 3 28 28 H 1.09008 * 109.46845 * 295.12524 * 1 2 3 29 29 H 1.08997 * 109.47738 * 120.00179 * 2 1 3 30 30 H 1.09003 * 109.46919 * 240.00160 * 2 1 3 31 31 H 0.97007 * 120.00495 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.43452 * 0.02562 * 15 14 12 33 33 H 1.07996 * 119.50958 * 180.25615 * 16 15 14 34 34 H 1.09001 * 109.46739 * 300.00660 * 20 19 18 35 35 H 1.08999 * 109.46806 * 59.99852 * 20 19 18 36 36 H 1.07995 * 120.52696 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3430 1.9919 -1.1802 5 1 2.0307 3.0089 -1.3658 6 6 3.0756 1.3030 -2.1413 7 7 3.1192 1.7467 -3.3765 8 14 3.9974 -0.2534 -1.6749 9 1 3.1577 -1.4380 -1.9861 10 1 5.2642 -0.3282 -2.4458 11 1 4.3027 -0.2312 -0.2218 12 6 2.1476 2.0503 1.1628 13 8 1.8168 1.5234 2.2072 14 6 2.6922 3.4265 1.1682 15 6 3.6013 3.8440 0.1880 16 6 4.0821 5.1363 0.2252 17 7 3.7059 5.9740 1.1725 18 6 2.8544 5.6223 2.1207 19 8 2.5009 6.5228 3.0721 20 6 3.0861 7.8234 2.9840 21 6 2.5726 8.6927 4.1335 22 9 2.9223 8.1058 5.3543 23 9 3.1452 9.9663 4.0467 24 9 1.1803 8.8013 4.0501 25 6 2.3177 4.3422 2.1541 26 1 -0.3634 0.5876 -0.8431 27 1 -0.3633 -1.0239 -0.0872 28 1 -0.3633 0.4364 0.9305 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.6298 1.2661 -4.0468 32 1 3.9185 3.1643 -0.5891 33 1 4.7802 5.4661 -0.5300 34 1 4.1709 7.7388 3.0493 35 1 2.8140 8.2805 2.0326 36 1 1.6227 4.0588 2.9306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152623677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:34 Heat of formation + Delta-G solvation = -172.402301 kcal Electronic energy + Delta-G solvation = -26575.629722 eV Core-core repulsion = 22032.285237 eV Total energy + Delta-G solvation = -4543.344485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.30244 -47.86226 -47.74863 -40.52617 -39.12126 -37.59363 -35.37812 -32.59893 -32.17333 -31.28619 -29.96998 -29.12058 -25.44999 -24.50402 -23.55105 -22.89437 -22.23000 -19.94625 -18.88023 -18.82482 -18.14193 -18.02118 -16.90394 -16.47721 -16.09183 -15.82061 -15.36958 -14.99627 -14.70880 -14.62226 -14.31837 -14.21683 -14.17783 -13.93017 -13.92533 -13.75151 -13.54643 -13.23476 -13.21649 -12.76601 -12.32793 -12.12264 -11.97264 -11.66268 -11.39416 -11.37037 -11.08912 -10.88737 -10.24364 -10.05977 -9.65697 -9.46291 -9.38797 -8.81747 -8.25875 -7.96233 -6.70947 -4.36903 1.25452 1.55320 2.09803 2.89666 2.90823 3.07092 3.13946 3.52357 3.55773 3.79237 3.91037 4.02710 4.21035 4.27159 4.47615 4.70437 4.86285 4.99915 5.34293 5.39886 5.52860 5.66710 5.81218 5.92901 6.01527 6.04852 6.26532 6.37111 6.50814 6.62718 6.76366 6.84803 7.13994 7.28536 7.81192 7.99609 8.05972 8.66434 9.03650 9.39331 10.36330 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.003273 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.573512 B = 8552.384311 C = 9193.430730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.448 5.448 4 C -0.351 4.351 5 H 0.109 0.891 6 C 0.070 3.930 7 N -0.849 5.849 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.258 1.258 12 C 0.515 3.485 13 O -0.584 6.584 14 C -0.021 4.021 15 C -0.141 4.141 16 C 0.114 3.886 17 N -0.538 5.538 18 C 0.294 3.706 19 O -0.296 6.296 20 C 0.030 3.970 21 C 0.462 3.538 22 F -0.175 7.175 23 F -0.174 7.174 24 F -0.175 7.175 25 C -0.139 4.139 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.280 0.720 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 8.577 6.702 11.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.167 5.167 4 C -0.478 4.478 5 H 0.126 0.874 6 C -0.140 4.140 7 N -0.482 5.482 8 Si 0.701 3.299 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.182 1.182 12 C 0.305 3.695 13 O -0.469 6.469 14 C -0.032 4.032 15 C -0.161 4.161 16 C -0.039 4.039 17 N -0.262 5.262 18 C 0.116 3.884 19 O -0.205 6.205 20 C -0.047 4.047 21 C 0.408 3.592 22 F -0.157 7.157 23 F -0.156 7.156 24 F -0.157 7.157 25 C -0.161 4.161 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.713 9.089 7.222 11.735 hybrid contribution 0.182 -1.234 -0.091 1.251 sum 1.895 7.855 7.131 10.777 Atomic orbital electron populations 1.21999 0.96072 1.01054 1.02453 1.21652 0.94867 0.84746 1.01242 1.43584 1.55697 1.11750 1.05699 1.19152 1.35185 1.01750 0.91729 0.87376 1.25437 0.95790 0.98114 0.94641 1.69668 1.37506 1.40058 1.00993 0.86904 0.79813 0.82960 0.80214 1.19710 1.20959 1.18207 1.18101 0.81772 0.85909 0.83747 1.90663 1.54558 1.69815 1.31862 1.20158 0.95520 0.94219 0.93289 1.23275 0.95970 0.97666 0.99169 1.22378 0.97399 0.89908 0.94258 1.67002 1.15186 1.39016 1.05038 1.19275 0.93398 0.87507 0.88214 1.86170 1.65996 1.20286 1.48041 1.23482 1.00953 0.83546 0.96766 1.20189 0.75997 0.79254 0.83802 1.93226 1.91690 1.83709 1.47062 1.93212 1.84729 1.41321 1.96300 1.93228 1.30049 1.96114 1.96275 1.20997 1.03521 0.90096 1.01482 0.91928 0.92791 0.92496 0.91359 0.91256 0.90980 0.80300 0.82091 0.87178 0.87109 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.20 37.16 0.38 -2.47 16 2 C 0.10 2.00 4.62 -4.04 -0.02 1.98 16 3 N -0.45 -10.02 2.08 -115.83 -0.24 -10.26 16 4 C -0.35 -8.13 6.41 -15.02 -0.10 -8.23 16 5 H 0.11 2.67 6.94 -52.49 -0.36 2.30 16 6 C 0.07 1.63 5.09 -17.45 -0.09 1.54 16 7 N -0.85 -20.86 13.95 55.50 0.77 -20.08 16 8 Si 0.87 18.43 24.93 -169.99 -4.24 14.19 16 9 H -0.27 -5.55 6.79 56.52 0.38 -5.17 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 12 C 0.52 11.59 7.43 -12.26 -0.09 11.49 16 13 O -0.58 -14.12 16.45 5.31 0.09 -14.04 16 14 C -0.02 -0.42 5.55 -104.68 -0.58 -1.00 16 15 C -0.14 -2.59 8.02 -39.01 -0.31 -2.91 16 16 C 0.11 1.82 11.16 -17.62 -0.20 1.62 16 17 N -0.54 -8.61 9.18 -13.39 -0.12 -8.73 16 18 C 0.29 4.92 7.49 -17.16 -0.13 4.79 16 19 O -0.30 -4.43 10.00 -18.77 -0.19 -4.62 16 20 C 0.03 0.35 5.27 37.15 0.20 0.54 16 21 C 0.46 5.14 3.32 37.15 0.12 5.26 16 22 F -0.18 -2.15 17.26 2.25 0.04 -2.11 16 23 F -0.17 -1.79 17.32 2.25 0.04 -1.75 16 24 F -0.18 -2.16 17.26 2.25 0.04 -2.12 16 25 C -0.14 -2.56 9.63 -38.82 -0.37 -2.93 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 30 H 0.07 1.42 3.93 -51.93 -0.20 1.22 16 31 H 0.28 6.44 8.31 -40.82 -0.34 6.11 16 32 H 0.18 3.55 5.36 -52.48 -0.28 3.27 16 33 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.11 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.14 2.60 7.97 -52.49 -0.42 2.18 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -26.47 322.44 -3.49 -29.96 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.35 Total: 5.02 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -1.19 Total: 9.68 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.41 Total: -39.07 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.10 Total: -18.66 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.12 Total: -5.99 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.24 Total: 14.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.47 -3.49 -29.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152623677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.438 kcal (2) G-P(sol) polarization free energy of solvation -26.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds