Wall clock time and date at job start Tue Mar 31 2020 11:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46953 * 2 1 4 4 C 1.36790 * 119.99937 * 265.03045 * 3 2 1 5 5 H 1.07994 * 119.99991 * 136.21550 * 4 3 2 6 6 C 1.39103 * 120.00295 * 316.21260 * 4 3 2 7 7 N 1.31319 * 120.00224 * 163.80543 * 6 4 3 8 8 Si 1.86809 * 119.99957 * 343.80533 * 6 4 3 9 9 H 1.48501 * 109.46771 * 95.30380 * 8 6 4 10 10 H 1.48488 * 109.47142 * 215.30582 * 8 6 4 11 11 H 1.48499 * 109.46727 * 335.30977 * 8 6 4 12 12 C 1.34774 * 119.99786 * 85.03065 * 3 2 1 13 13 O 1.21564 * 119.99836 * 357.53750 * 12 3 2 14 14 C 1.48006 * 119.99779 * 177.53732 * 12 3 2 15 15 C 1.40056 * 120.90032 * 331.06027 * 14 12 3 16 16 C 1.37934 * 119.12574 * 179.77322 * 15 14 12 17 17 N 1.31933 * 120.98351 * 0.52003 * 16 15 14 18 18 C 1.32207 * 121.98771 * 359.73704 * 17 16 15 19 19 O 1.35689 * 119.61498 * 179.97438 * 18 17 16 20 20 C 1.42897 * 117.00564 * 0.02562 * 19 18 17 21 21 C 1.52993 * 109.47267 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47464 * 59.99857 * 21 20 19 23 23 F 1.39902 * 109.46915 * 180.02562 * 21 20 19 24 24 F 1.39901 * 109.47227 * 299.99492 * 21 20 19 25 25 C 1.38849 * 120.76302 * 359.97438 * 18 17 16 26 26 H 1.08999 * 109.47429 * 55.12682 * 1 2 3 27 27 H 1.08994 * 109.46949 * 175.13394 * 1 2 3 28 28 H 1.09008 * 109.46845 * 295.12524 * 1 2 3 29 29 H 1.08997 * 109.47738 * 120.00179 * 2 1 3 30 30 H 1.09003 * 109.46919 * 240.00160 * 2 1 3 31 31 H 0.97007 * 120.00495 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.43452 * 0.02562 * 15 14 12 33 33 H 1.07996 * 119.50958 * 180.25615 * 16 15 14 34 34 H 1.09001 * 109.46739 * 300.00660 * 20 19 18 35 35 H 1.08999 * 109.46806 * 59.99852 * 20 19 18 36 36 H 1.07995 * 120.52696 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3430 1.9919 -1.1802 5 1 2.0307 3.0089 -1.3658 6 6 3.0756 1.3030 -2.1413 7 7 3.1192 1.7467 -3.3765 8 14 3.9974 -0.2534 -1.6749 9 1 3.1577 -1.4380 -1.9861 10 1 5.2642 -0.3282 -2.4458 11 1 4.3027 -0.2312 -0.2218 12 6 2.1476 2.0503 1.1628 13 8 1.8168 1.5234 2.2072 14 6 2.6922 3.4265 1.1682 15 6 3.6013 3.8440 0.1880 16 6 4.0821 5.1363 0.2252 17 7 3.7059 5.9740 1.1725 18 6 2.8544 5.6223 2.1207 19 8 2.5009 6.5228 3.0721 20 6 3.0861 7.8234 2.9840 21 6 2.5726 8.6927 4.1335 22 9 2.9223 8.1058 5.3543 23 9 3.1452 9.9663 4.0467 24 9 1.1803 8.8013 4.0501 25 6 2.3177 4.3422 2.1541 26 1 -0.3634 0.5876 -0.8431 27 1 -0.3633 -1.0239 -0.0872 28 1 -0.3633 0.4364 0.9305 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.6298 1.2661 -4.0468 32 1 3.9185 3.1643 -0.5891 33 1 4.7802 5.4661 -0.5300 34 1 4.1709 7.7388 3.0493 35 1 2.8140 8.2805 2.0326 36 1 1.6227 4.0588 2.9306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152623677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:34 Heat of formation + Delta-G solvation = -188.754853 kcal Electronic energy + Delta-G solvation = -26576.338822 eV Core-core repulsion = 22032.285237 eV Total energy + Delta-G solvation = -4544.053585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.21465 -48.75072 -48.69681 -41.91563 -40.69647 -38.91796 -37.15099 -34.28423 -33.74318 -32.50318 -31.45968 -30.32571 -27.18615 -25.97438 -24.71227 -24.25180 -23.63374 -21.45353 -20.24783 -19.74969 -19.38891 -19.06479 -18.44579 -17.88872 -17.47428 -17.20899 -16.85060 -16.51775 -15.97793 -15.83263 -15.60349 -15.55526 -15.18756 -15.13200 -14.88750 -14.86350 -14.84556 -14.62210 -14.54962 -14.39764 -13.98976 -13.76451 -13.25890 -13.00639 -12.79740 -12.70986 -12.58622 -12.41719 -11.95322 -11.70168 -11.27467 -11.06600 -10.86653 -10.48658 -9.80003 -9.54089 -8.51952 -6.20227 -0.21336 0.17861 1.06747 1.22434 1.36257 1.45187 1.83896 1.92502 2.17289 2.45619 2.65228 2.73847 2.89572 2.98906 3.10174 3.34187 3.83013 3.98878 4.01322 4.03660 4.09020 4.14685 4.35618 4.38617 4.47780 4.69883 4.79700 4.91275 4.99294 5.22913 5.26910 5.40565 5.44193 5.97120 6.01191 6.18203 6.69914 6.86496 7.24904 7.62488 8.58419 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.003273 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.573512 B = 8552.384311 C = 9193.430730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.088 3.912 3 N -0.455 5.455 4 C -0.343 4.343 5 H 0.088 0.912 6 C 0.046 3.954 7 N -0.880 5.880 8 Si 0.917 3.083 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.509 3.491 13 O -0.608 6.608 14 C -0.042 4.042 15 C -0.150 4.150 16 C 0.132 3.868 17 N -0.526 5.526 18 C 0.304 3.696 19 O -0.304 6.304 20 C 0.026 3.974 21 C 0.469 3.531 22 F -0.182 7.182 23 F -0.166 7.166 24 F -0.183 7.183 25 C -0.150 4.150 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.284 0.716 32 H 0.164 0.836 33 H 0.198 0.802 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 9.230 6.700 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 N -0.174 5.174 4 C -0.471 4.471 5 H 0.106 0.894 6 C -0.161 4.161 7 N -0.515 5.515 8 Si 0.742 3.258 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.194 1.194 12 C 0.299 3.701 13 O -0.494 6.494 14 C -0.053 4.053 15 C -0.170 4.170 16 C -0.023 4.023 17 N -0.251 5.251 18 C 0.126 3.874 19 O -0.213 6.213 20 C -0.051 4.051 21 C 0.415 3.585 22 F -0.164 7.164 23 F -0.147 7.147 24 F -0.164 7.164 25 C -0.172 4.172 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.182 0.818 33 H 0.215 0.785 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.411 9.750 7.223 12.372 hybrid contribution -0.040 -1.307 -0.022 1.308 sum 2.371 8.443 7.202 11.348 Atomic orbital electron populations 1.21925 0.94233 1.02967 1.01542 1.21819 0.96518 0.83845 1.01222 1.43709 1.55860 1.12441 1.05416 1.18907 1.35170 1.01121 0.91858 0.89420 1.25773 0.96016 0.99966 0.94351 1.69710 1.38637 1.41430 1.01738 0.86242 0.79262 0.81113 0.79162 1.18425 1.20482 1.19351 1.18531 0.81253 0.86909 0.83398 1.90626 1.55598 1.70700 1.32514 1.20077 0.96836 0.93526 0.94846 1.23111 0.96517 0.98742 0.98666 1.22861 0.96614 0.88538 0.94274 1.67166 1.14684 1.38470 1.04732 1.19220 0.92684 0.87262 0.88275 1.86139 1.66233 1.21531 1.47354 1.23767 1.01873 0.81851 0.97594 1.20089 0.75583 0.79435 0.83396 1.93217 1.91706 1.83894 1.47572 1.93232 1.84540 1.40732 1.96229 1.93218 1.30781 1.96168 1.96277 1.20965 1.04079 0.90922 1.01203 0.92781 0.89461 0.93371 0.91365 0.91140 0.90544 0.81844 0.78512 0.85420 0.85558 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.20 71.98 0.73 -4.52 16 2 C 0.09 3.58 4.62 86.38 0.40 3.97 16 3 N -0.46 -20.51 2.08 -638.66 -1.33 -21.84 16 4 C -0.34 -16.06 6.41 84.13 0.54 -15.52 16 5 H 0.09 4.43 6.94 -2.91 -0.02 4.41 16 6 C 0.05 2.14 5.09 84.98 0.43 2.57 16 7 N -0.88 -43.12 13.95 21.69 0.30 -42.82 16 8 Si 0.92 37.33 24.93 68.60 1.71 39.04 16 9 H -0.26 -9.98 6.79 99.48 0.68 -9.31 16 10 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.51 23.24 7.43 86.83 0.65 23.88 16 13 O -0.61 -29.87 16.45 -3.92 -0.06 -29.93 16 14 C -0.04 -1.71 5.55 -19.90 -0.11 -1.82 16 15 C -0.15 -5.47 8.02 22.64 0.18 -5.29 16 16 C 0.13 3.89 11.16 84.61 0.94 4.83 16 17 N -0.53 -15.53 9.18 -309.15 -2.84 -18.37 16 18 C 0.30 9.70 7.49 84.78 0.63 10.34 16 19 O -0.30 -8.57 10.00 -90.07 -0.90 -9.48 16 20 C 0.03 0.53 5.27 71.98 0.38 0.91 16 21 C 0.47 9.52 3.32 71.98 0.24 9.76 16 22 F -0.18 -4.19 17.26 44.97 0.78 -3.41 16 23 F -0.17 -3.04 17.32 44.97 0.78 -2.26 16 24 F -0.18 -4.24 17.26 44.97 0.78 -3.47 16 25 C -0.15 -5.49 9.63 22.76 0.22 -5.27 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.07 2.75 7.61 -2.39 -0.02 2.73 16 30 H 0.07 2.82 3.93 -2.39 -0.01 2.81 16 31 H 0.28 12.99 8.31 -92.70 -0.77 12.22 16 32 H 0.16 6.52 5.36 -2.91 -0.02 6.51 16 33 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.13 2.20 8.10 -2.39 -0.02 2.18 16 35 H 0.13 2.23 8.10 -2.39 -0.02 2.21 16 36 H 0.14 5.15 7.97 -2.91 -0.02 5.12 16 Total: -1.00 -55.91 322.44 5.56 -50.35 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.11 Total: 18.34 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 5.24 Total: 23.85 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -3.87 Total: -83.04 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.97 Total: -39.41 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 2.33 Total: -9.13 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 1.71 Total: 39.04 kcal Total: -55.91 5.56 -50.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152623677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.406 kcal (2) G-P(sol) polarization free energy of solvation -55.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds