Wall clock time and date at job start Tue Mar 31 2020 11:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21291 * 119.99575 * 2 1 4 4 C 1.46850 * 120.00237 * 179.97438 * 2 1 3 5 5 C 1.40038 * 120.11623 * 354.48855 * 4 2 1 6 6 C 1.36590 * 120.01200 * 179.97438 * 5 4 2 7 7 C 1.39079 * 120.23917 * 0.25007 * 6 5 4 8 8 O 1.35668 * 119.88224 * 179.72583 * 7 6 5 9 9 C 1.42900 * 116.99845 * 359.97438 * 8 7 6 10 10 C 1.52996 * 109.46660 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.47496 * 304.99922 * 10 9 8 12 12 C 1.47195 * 109.47672 * 65.00300 * 10 9 8 13 13 N 8.76837 * 120.58449 * 162.77360 * 2 1 3 14 14 C 1.53010 * 109.46814 * 185.00295 * 10 9 8 15 15 C 1.50702 * 109.47039 * 175.00070 * 14 10 9 16 16 H 1.08004 * 119.99844 * 0.02562 * 15 14 10 17 17 C 1.37871 * 120.00238 * 179.97438 * 15 14 10 18 18 N 1.31523 * 119.99566 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00263 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46861 * 60.00432 * 19 17 15 21 21 H 1.48507 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47536 * 300.00291 * 19 17 15 23 23 C 1.39083 * 120.23271 * 359.49345 * 7 6 5 24 24 N 1.48009 * 120.00511 * 180.27956 * 23 7 6 25 25 O 1.21802 * 119.99611 * 180.22824 * 24 23 7 26 26 O 1.21796 * 120.00647 * 0.22941 * 24 23 7 27 27 C 1.37655 * 119.98549 * 0.50624 * 23 7 6 28 28 H 1.09000 * 109.46742 * 185.08769 * 1 2 3 29 29 H 1.08998 * 109.47614 * 305.08658 * 1 2 3 30 30 H 1.08998 * 109.46964 * 65.09453 * 1 2 3 31 31 H 1.08006 * 119.99722 * 359.95237 * 5 4 2 32 32 H 1.07998 * 119.87657 * 179.97438 * 6 5 4 33 33 H 1.08991 * 109.47470 * 300.00016 * 9 8 7 34 34 H 1.09001 * 109.46653 * 60.00118 * 9 8 7 35 35 H 1.08994 * 109.46741 * 294.99718 * 14 10 9 36 36 H 1.08997 * 109.46935 * 55.00070 * 14 10 9 37 37 H 0.97001 * 119.99708 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.11832 * 179.76640 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 1.5485 -2.4831 0.1175 6 6 2.2336 -3.6647 0.1172 7 6 3.6200 -3.6706 0.0064 8 8 4.2936 -4.8482 0.0125 9 6 3.5152 -6.0402 0.1364 10 6 4.4416 -7.2577 0.1236 11 1 5.0605 -7.2340 -0.7734 12 6 5.3044 -7.2305 1.3158 13 7 5.9685 -7.2099 2.2355 14 6 3.6024 -8.5371 0.1304 15 6 4.5089 -9.7332 -0.0059 16 1 5.5769 -9.5948 -0.0888 17 6 3.9752 -11.0043 -0.0239 18 7 2.6748 -11.1729 0.0774 19 14 5.0988 -12.4869 -0.1937 20 1 6.0553 -12.5156 0.9418 21 1 4.2843 -13.7286 -0.1869 22 1 5.8499 -12.3951 -1.4714 23 6 4.3178 -2.4737 -0.1156 24 7 5.7926 -2.4861 -0.2394 25 8 6.4039 -1.4376 -0.3421 26 8 6.3951 -3.5446 -0.2388 27 6 3.6369 -1.2773 -0.1164 28 1 -0.3633 -1.0236 0.0911 29 1 -0.3634 0.5907 0.8409 30 1 -0.3633 0.4328 -0.9321 31 1 0.4723 -2.4830 0.2082 32 1 1.6971 -4.5977 0.2079 33 1 2.9597 -6.0157 1.0738 34 1 2.8170 -6.1064 -0.6981 35 1 3.0505 -8.6045 1.0679 36 1 2.9009 -8.5159 -0.7035 37 1 2.2992 -12.0671 0.0644 38 1 4.1769 -0.3465 -0.2072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153840640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:15 Heat of formation + Delta-G solvation = -49.712240 kcal Electronic energy + Delta-G solvation = -25366.319059 eV Core-core repulsion = 21370.151555 eV Total energy + Delta-G solvation = -3996.167505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.31182 -41.70633 -40.59540 -38.87420 -37.87709 -37.52940 -35.67504 -34.06603 -33.50296 -32.21316 -30.49009 -29.05889 -27.45376 -26.02415 -24.60686 -23.87845 -23.23418 -21.59869 -20.12494 -19.76213 -19.12830 -18.75219 -18.55003 -18.37053 -17.42253 -17.38238 -16.77167 -16.50858 -16.07970 -16.01193 -15.67656 -15.22362 -14.83651 -14.57009 -14.29773 -14.01402 -13.87549 -13.75630 -13.46026 -13.20407 -13.03186 -12.95499 -12.71882 -12.66723 -12.53443 -12.48976 -12.33358 -12.28557 -12.08366 -11.89746 -11.57452 -11.27764 -10.95635 -10.89560 -10.54088 -9.85558 -8.21036 -6.27189 -1.26679 -0.67773 0.17341 0.33127 1.14362 1.41990 1.44028 1.49342 1.57399 1.94104 2.00009 2.25803 2.42553 2.83209 3.09858 3.17605 3.19378 3.33036 3.63400 3.66084 3.83789 3.89333 4.12429 4.28504 4.37196 4.44468 4.57004 4.66878 4.72641 4.74574 4.78289 4.79359 5.09979 5.21457 5.28093 5.44574 5.58742 5.76590 5.83316 6.18989 6.42638 6.44983 6.73360 6.85471 7.41247 8.89206 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002893 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.819705 B = 9675.331799 C =10824.226484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.404 3.596 3 O -0.503 6.503 4 C -0.216 4.216 5 C 0.046 3.954 6 C -0.212 4.212 7 C 0.223 3.777 8 O -0.298 6.298 9 C 0.058 3.942 10 C 0.019 3.981 11 H 0.125 0.875 12 C 0.250 3.750 13 N -0.505 5.505 14 C 0.044 3.956 15 C -0.543 4.543 16 H 0.049 0.951 17 C 0.020 3.980 18 N -0.916 5.916 19 Si 0.940 3.060 20 H -0.285 1.285 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.119 4.119 24 N 0.038 4.962 25 O -0.195 6.195 26 O -0.177 6.177 27 C 0.025 3.975 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.213 0.787 32 H 0.198 0.802 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.265 0.735 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 19.322 -3.381 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.286 3.714 3 O -0.382 6.382 4 C -0.218 4.218 5 C 0.028 3.972 6 C -0.231 4.231 7 C 0.171 3.829 8 O -0.208 6.208 9 C -0.017 4.017 10 C -0.002 4.002 11 H 0.143 0.857 12 C -0.066 4.066 13 N -0.182 5.182 14 C 0.006 3.994 15 C -0.582 4.582 16 H 0.068 0.932 17 C -0.180 4.180 18 N -0.556 5.556 19 Si 0.767 3.233 20 H -0.211 1.211 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.204 4.204 24 N 0.549 4.451 25 O -0.404 6.404 26 O -0.390 6.390 27 C 0.006 3.994 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.229 0.771 32 H 0.215 0.785 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.282 19.696 -1.952 23.836 hybrid contribution 1.536 -1.175 -0.276 1.954 sum -11.746 18.521 -2.228 22.045 Atomic orbital electron populations 1.22319 0.88816 1.07539 1.06340 1.22932 0.93772 0.85654 0.69086 1.90602 1.73283 1.35504 1.38800 1.20697 0.91495 0.97918 1.11731 1.22052 1.03618 0.88154 0.83329 1.21675 0.89281 1.03625 1.08485 1.19387 0.92454 0.84123 0.86896 1.86391 1.37626 1.13079 1.83730 1.23494 0.93466 0.78508 1.06189 1.19271 0.94584 0.96078 0.90307 0.85726 1.29451 0.92798 0.90187 0.94183 1.80968 1.11755 1.11635 1.13815 1.18980 0.94275 0.87470 0.98697 1.21464 0.93760 0.92325 1.50605 0.93227 1.25538 0.96147 1.01331 0.94941 1.69968 1.11483 1.23326 1.50803 0.85876 0.79156 0.79541 0.78766 1.21084 1.20556 1.19123 1.20637 0.78430 0.95677 1.25694 1.43739 1.04261 1.00083 0.97049 1.94485 1.69439 1.21711 1.54782 1.94644 1.70137 1.19688 1.54486 1.21182 0.95180 0.95643 0.87414 0.86293 0.87659 0.87090 0.77082 0.78477 0.88310 0.84681 0.96520 0.92783 0.92566 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.32 10.19 71.24 0.73 0.41 16 2 C 0.40 4.88 7.21 27.94 0.20 5.08 16 3 O -0.50 -10.99 17.10 -3.06 -0.05 -11.04 16 4 C -0.22 -2.71 5.87 -20.15 -0.12 -2.83 16 5 C 0.05 0.24 9.39 22.32 0.21 0.45 16 6 C -0.21 -2.10 8.96 22.09 0.20 -1.90 16 7 C 0.22 4.65 6.68 22.67 0.15 4.80 16 8 O -0.30 -7.71 7.87 -68.67 -0.54 -8.25 16 9 C 0.06 1.22 4.09 71.98 0.29 1.52 16 10 C 0.02 0.61 2.45 -12.60 -0.03 0.58 16 11 H 0.13 3.86 8.14 -2.38 -0.02 3.84 16 12 C 0.25 9.98 13.70 89.46 1.23 11.21 16 13 N -0.50 -22.71 18.53 19.99 0.37 -22.34 16 14 C 0.04 1.75 4.42 29.85 0.13 1.88 16 15 C -0.54 -26.89 8.60 25.60 0.22 -26.67 16 16 H 0.05 2.50 7.59 -2.91 -0.02 2.48 16 17 C 0.02 1.04 5.46 84.65 0.46 1.51 16 18 N -0.92 -48.60 13.29 21.45 0.28 -48.32 16 19 Si 0.94 41.73 29.54 68.60 2.03 43.75 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.12 -3.02 6.86 36.44 0.25 -2.77 16 24 N 0.04 1.27 4.45 -46.31 -0.21 1.07 16 25 O -0.20 -6.73 18.45 18.88 0.35 -6.38 16 26 O -0.18 -6.73 17.24 25.62 0.44 -6.29 16 27 C 0.03 0.52 9.10 22.57 0.21 0.72 16 28 H 0.12 -0.66 5.61 -2.39 -0.01 -0.67 16 29 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.21 -1.19 5.93 -2.91 -0.02 -1.20 16 32 H 0.20 0.69 6.27 -2.91 -0.02 0.67 16 33 H 0.10 1.72 7.65 -2.39 -0.02 1.70 16 34 H 0.14 1.78 7.65 -2.39 -0.02 1.76 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 38 H 0.15 3.48 7.21 -2.91 -0.02 3.46 16 Total: -1.00 -78.47 347.67 7.92 -70.54 By element: Atomic # 1 Polarization: -7.86 SS G_CDS: 1.12 Total: -6.74 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 4.13 Total: -6.01 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: 0.45 Total: -69.59 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: 0.20 Total: -31.96 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -78.47 7.92 -70.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153840640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.829 kcal (2) G-P(sol) polarization free energy of solvation -78.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds