Wall clock time and date at job start Tue Mar 31 2020 11:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46771 * 2 1 4 4 C 1.50697 * 109.46787 * 119.99730 * 2 1 3 5 5 H 1.08001 * 119.99998 * 120.00657 * 4 2 1 6 6 C 1.37878 * 120.00453 * 300.00001 * 4 2 1 7 7 N 1.31517 * 119.99476 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47323 * 90.00146 * 8 6 4 10 10 H 1.48504 * 109.46785 * 210.00094 * 8 6 4 11 11 H 1.48505 * 109.47044 * 329.99617 * 8 6 4 12 12 N 1.46495 * 109.47318 * 240.00117 * 2 1 3 13 13 C 1.34773 * 120.00410 * 84.99597 * 12 2 1 14 14 O 1.21594 * 119.99877 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00348 * 180.02562 * 13 12 2 16 16 C 1.40169 * 120.00085 * 185.64365 * 15 13 12 17 17 C 1.38709 * 120.08964 * 24.76241 * 16 15 13 18 18 C 1.38205 * 119.98468 * 180.28432 * 17 16 15 19 19 C 1.38274 * 120.15924 * 359.71922 * 18 17 16 20 20 C 1.38246 * 120.17701 * 0.02562 * 19 18 17 21 21 C 1.38536 * 120.01576 * 359.97438 * 20 19 18 22 22 O 1.35984 * 120.08509 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99733 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.47476 * 59.99807 * 23 22 21 25 25 F 1.39902 * 109.47498 * 180.02562 * 23 22 21 26 26 F 1.39909 * 109.47109 * 299.99735 * 23 22 21 27 27 H 1.09000 * 109.47035 * 299.99822 * 1 2 3 28 28 H 1.08999 * 109.46981 * 60.00602 * 1 2 3 29 29 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 30 30 H 0.97004 * 119.99480 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99967 * 265.00214 * 12 2 1 32 32 H 0.97003 * 119.99581 * 5.63295 * 15 13 12 33 33 H 1.07998 * 120.00744 * 0.02573 * 17 16 15 34 34 H 1.08000 * 119.91977 * 179.74748 * 18 17 16 35 35 H 1.08005 * 119.90947 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.99087 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1616 -2.4117 15 7 2.5959 -0.6537 -3.4577 16 6 2.8424 0.0693 -4.6329 17 6 3.1302 1.4247 -4.5681 18 6 3.3670 2.1367 -5.7287 19 6 3.3236 1.5001 -6.9554 20 6 3.0426 0.1484 -7.0273 21 6 2.8040 -0.5724 -5.8686 22 8 2.5270 -1.9020 -5.9377 23 6 2.4984 -2.4918 -7.2389 24 9 3.7476 -2.3360 -7.8491 25 9 2.2004 -3.8542 -7.1270 26 9 1.5187 -1.8628 -8.0147 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7081 1.1609 3.4844 31 1 2.2491 -1.6317 -1.1526 32 1 2.7485 -1.6114 -3.4363 33 1 3.1651 1.9243 -3.6113 34 1 3.5870 3.1928 -5.6774 35 1 3.5098 2.0604 -7.8598 36 1 3.0099 -0.3459 -7.9870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154356392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:52 Heat of formation + Delta-G solvation = -191.691848 kcal Electronic energy + Delta-G solvation = -26614.310888 eV Core-core repulsion = 22070.129945 eV Total energy + Delta-G solvation = -4544.180943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.65965 -48.38381 -48.24940 -40.81722 -39.34657 -37.60213 -35.23872 -34.29080 -32.48741 -30.46950 -29.90642 -28.24871 -26.19183 -25.28865 -23.40549 -22.73843 -21.29315 -20.00766 -19.81215 -19.37240 -19.24044 -18.27507 -17.54681 -16.49491 -16.11904 -15.56371 -15.37300 -15.23105 -15.00077 -14.76447 -14.74189 -14.68190 -14.59834 -14.43781 -14.30513 -14.07686 -13.65049 -13.45221 -13.06606 -12.47375 -12.36864 -11.91664 -11.78771 -11.58232 -11.11323 -11.04858 -10.83430 -10.43267 -10.27714 -10.26119 -9.47459 -9.09584 -8.79888 -8.60437 -8.17122 -7.77129 -6.16245 -4.25593 1.12953 1.22949 1.29578 2.60712 3.00969 3.22835 3.29835 3.31875 3.44151 3.56905 3.73738 3.93114 4.29117 4.58480 4.61073 4.79899 5.04533 5.16683 5.23928 5.38650 5.64529 5.84795 6.10302 6.33355 6.46227 6.55055 6.74745 6.93691 7.01739 7.05908 7.16206 7.38414 7.58067 7.77060 7.92713 8.10721 8.65458 8.77329 9.12365 9.42276 10.89809 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.003063 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.104174 B = 9138.079531 C = 9952.282405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.715 5.715 13 C 0.694 3.306 14 O -0.580 6.580 15 N -0.688 5.688 16 C 0.192 3.808 17 C -0.103 4.103 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.168 4.168 21 C 0.053 3.947 22 O -0.312 6.312 23 C 0.605 3.395 24 F -0.167 7.167 25 F -0.134 7.134 26 F -0.166 7.166 27 H 0.091 0.909 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.407 0.593 33 H 0.166 0.834 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 -4.425 -20.431 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.366 5.366 13 C 0.394 3.606 14 O -0.458 6.458 15 N -0.335 5.335 16 C 0.093 3.907 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.133 4.133 20 C -0.187 4.187 21 C 0.008 3.992 22 O -0.232 6.232 23 C 0.515 3.485 24 F -0.149 7.149 25 F -0.115 7.115 26 F -0.148 7.148 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.242 0.758 33 H 0.183 0.817 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.446 -3.392 -20.029 20.795 hybrid contribution 0.386 -1.657 0.471 1.766 sum 4.832 -5.049 -19.558 20.769 Atomic orbital electron populations 1.22114 0.98435 0.99189 1.01013 1.18730 0.90945 0.93783 0.78738 0.93110 1.21194 1.32607 1.13354 0.90191 0.92027 1.24875 0.94754 0.94970 0.99040 1.69905 1.35673 1.22432 1.23975 0.86421 0.78605 0.79815 0.82091 1.20531 1.21044 1.19850 1.45911 1.68166 1.13526 1.08952 1.16125 0.78561 0.85540 0.80332 1.90836 1.56664 1.14259 1.84014 1.42819 1.69369 1.11618 1.09685 1.16877 0.99829 0.91770 0.82191 1.21583 0.97807 0.91532 1.01408 1.21167 0.99581 1.00410 0.91651 1.20856 1.00901 0.93245 0.98315 1.21212 1.05265 0.96312 0.95886 1.18302 1.07132 0.79654 0.94107 1.86343 1.86897 1.24198 1.25767 1.19314 0.74690 0.76563 0.77976 1.93292 1.42743 1.95299 1.83564 1.93305 1.93162 1.29385 1.95646 1.93301 1.63394 1.82327 1.75760 0.89008 0.96540 0.95465 0.92504 0.77989 0.75750 0.81702 0.85006 0.85284 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.28 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.71 -14.55 5.07 -59.81 -0.30 -14.85 16 13 C 0.69 13.73 8.33 -86.92 -0.72 13.00 16 14 O -0.58 -13.30 13.18 5.28 0.07 -13.23 16 15 N -0.69 -10.82 5.30 -14.10 -0.07 -10.89 16 16 C 0.19 2.90 6.45 -83.48 -0.54 2.36 16 17 C -0.10 -1.54 8.72 -39.42 -0.34 -1.88 16 18 C -0.11 -1.29 10.04 -39.58 -0.40 -1.68 16 19 C -0.11 -1.19 10.04 -39.57 -0.40 -1.59 16 20 C -0.17 -1.91 8.26 -39.47 -0.33 -2.24 16 21 C 0.05 0.70 6.50 -39.08 -0.25 0.45 16 22 O -0.31 -3.83 9.79 -19.69 -0.19 -4.02 16 23 C 0.61 6.28 3.42 101.05 0.35 6.62 16 24 F -0.17 -1.63 15.57 2.25 0.04 -1.60 16 25 F -0.13 -1.33 17.53 2.25 0.04 -1.29 16 26 F -0.17 -1.72 15.57 2.25 0.04 -1.68 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 6.78 8.56 -40.82 -0.35 6.43 16 32 H 0.41 5.33 8.36 -40.82 -0.34 4.99 16 33 H 0.17 2.85 5.79 -52.49 -0.30 2.54 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.13 1.29 5.10 -52.49 -0.27 1.02 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -29.26 321.68 -6.00 -35.26 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.20 Total: 9.95 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.86 Total: 6.01 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.25 Total: -49.53 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.12 Total: -17.25 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.11 Total: -4.57 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.26 -6.00 -35.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154356392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.431 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds