Wall clock time and date at job start Tue Mar 31 2020 11:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46771 * 2 1 4 4 C 1.50697 * 109.46787 * 119.99730 * 2 1 3 5 5 H 1.08001 * 119.99998 * 120.00657 * 4 2 1 6 6 C 1.37878 * 120.00453 * 300.00001 * 4 2 1 7 7 N 1.31517 * 119.99476 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47323 * 90.00146 * 8 6 4 10 10 H 1.48504 * 109.46785 * 210.00094 * 8 6 4 11 11 H 1.48505 * 109.47044 * 329.99617 * 8 6 4 12 12 N 1.46495 * 109.47318 * 240.00117 * 2 1 3 13 13 C 1.34773 * 120.00410 * 84.99597 * 12 2 1 14 14 O 1.21594 * 119.99877 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00348 * 180.02562 * 13 12 2 16 16 C 1.40169 * 120.00085 * 185.64365 * 15 13 12 17 17 C 1.38709 * 120.08964 * 24.76241 * 16 15 13 18 18 C 1.38205 * 119.98468 * 180.28432 * 17 16 15 19 19 C 1.38274 * 120.15924 * 359.71922 * 18 17 16 20 20 C 1.38246 * 120.17701 * 0.02562 * 19 18 17 21 21 C 1.38536 * 120.01576 * 359.97438 * 20 19 18 22 22 O 1.35984 * 120.08509 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99733 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.47476 * 59.99807 * 23 22 21 25 25 F 1.39902 * 109.47498 * 180.02562 * 23 22 21 26 26 F 1.39909 * 109.47109 * 299.99735 * 23 22 21 27 27 H 1.09000 * 109.47035 * 299.99822 * 1 2 3 28 28 H 1.08999 * 109.46981 * 60.00602 * 1 2 3 29 29 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 30 30 H 0.97004 * 119.99480 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99967 * 265.00214 * 12 2 1 32 32 H 0.97003 * 119.99581 * 5.63295 * 15 13 12 33 33 H 1.07998 * 120.00744 * 0.02573 * 17 16 15 34 34 H 1.08000 * 119.91977 * 179.74748 * 18 17 16 35 35 H 1.08005 * 119.90947 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.99087 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1616 -2.4117 15 7 2.5959 -0.6537 -3.4577 16 6 2.8424 0.0693 -4.6329 17 6 3.1302 1.4247 -4.5681 18 6 3.3670 2.1367 -5.7287 19 6 3.3236 1.5001 -6.9554 20 6 3.0426 0.1484 -7.0273 21 6 2.8040 -0.5724 -5.8686 22 8 2.5270 -1.9020 -5.9377 23 6 2.4984 -2.4918 -7.2389 24 9 3.7476 -2.3360 -7.8491 25 9 2.2004 -3.8542 -7.1270 26 9 1.5187 -1.8628 -8.0147 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7081 1.1609 3.4844 31 1 2.2491 -1.6317 -1.1526 32 1 2.7485 -1.6114 -3.4363 33 1 3.1651 1.9243 -3.6113 34 1 3.5870 3.1928 -5.6774 35 1 3.5098 2.0604 -7.8598 36 1 3.0099 -0.3459 -7.9870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154356392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:51 Heat of formation + Delta-G solvation = -210.741176 kcal Electronic energy + Delta-G solvation = -26615.136928 eV Core-core repulsion = 22070.129945 eV Total energy + Delta-G solvation = -4545.006984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.47392 -49.19161 -49.05815 -41.99423 -40.67393 -38.65725 -36.93642 -35.76157 -34.35977 -31.56156 -31.29943 -29.76780 -27.33546 -27.05884 -24.63299 -23.76831 -22.82970 -21.62442 -20.84008 -20.19706 -20.15595 -19.80608 -18.72307 -17.90226 -17.52948 -16.94138 -16.64619 -16.25550 -16.21422 -15.94215 -15.78557 -15.59434 -15.49819 -15.43572 -15.41060 -15.17141 -15.06558 -14.60390 -14.40819 -14.15099 -13.83886 -13.37628 -12.96852 -12.90158 -12.79723 -12.75067 -12.58510 -12.26575 -12.11665 -11.65010 -11.10894 -11.04654 -10.60464 -9.89658 -9.78826 -8.99329 -8.17454 -6.34515 0.13969 0.21375 0.40658 1.45996 1.46794 1.56569 1.63494 1.76857 2.09291 2.42223 2.66976 2.73394 2.97758 3.13388 3.32969 3.64396 3.72080 4.10363 4.31759 4.37280 4.56053 4.74261 4.89864 4.93123 5.08865 5.18453 5.31514 5.36404 5.42179 5.50171 5.59537 5.64636 5.82310 5.96117 6.08409 6.17650 6.72421 7.13532 7.33452 7.59258 8.89054 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.003063 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.104174 B = 9138.079531 C = 9952.282405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.288 3.712 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.712 5.712 13 C 0.695 3.305 14 O -0.616 6.616 15 N -0.674 5.674 16 C 0.159 3.841 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.168 4.168 21 C 0.055 3.945 22 O -0.321 6.321 23 C 0.611 3.389 24 F -0.161 7.161 25 F -0.130 7.130 26 F -0.164 7.164 27 H 0.069 0.931 28 H 0.011 0.989 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.420 0.580 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -5.628 -22.257 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.023 0.977 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.185 1.185 12 N -0.364 5.364 13 C 0.396 3.604 14 O -0.497 6.497 15 N -0.322 5.322 16 C 0.062 3.938 17 C -0.145 4.145 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.186 4.186 21 C 0.010 3.990 22 O -0.242 6.242 23 C 0.520 3.480 24 F -0.143 7.143 25 F -0.112 7.112 26 F -0.146 7.146 27 H 0.088 0.912 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.257 0.743 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.362 -4.645 -21.918 23.037 hybrid contribution 0.138 -1.237 0.865 1.516 sum 5.501 -5.882 -21.053 22.541 Atomic orbital electron populations 1.21932 0.98369 0.99429 0.99642 1.18305 0.90919 0.91880 0.80432 0.97702 1.21514 1.32709 1.13679 0.90643 0.90858 1.25764 0.94823 0.95585 1.02199 1.70049 1.36800 1.23879 1.24675 0.85333 0.77770 0.79132 0.78021 1.20346 1.20964 1.18500 1.45506 1.68599 1.14096 1.08231 1.16164 0.78302 0.85051 0.80914 1.90820 1.58100 1.15981 1.84753 1.42461 1.68683 1.12093 1.08917 1.17048 1.02173 0.92160 0.82437 1.21456 0.99626 0.91959 1.01449 1.21438 0.98628 1.01465 0.91078 1.21308 0.98178 0.92974 0.99062 1.21559 1.04306 0.96816 0.95958 1.18312 1.06705 0.80128 0.93844 1.86312 1.86881 1.23859 1.27118 1.19189 0.74863 0.76536 0.77391 1.93305 1.42357 1.95269 1.83320 1.93317 1.93161 1.29113 1.95583 1.93307 1.63374 1.82316 1.75561 0.91241 0.96951 0.94224 0.92481 0.76194 0.74309 0.84840 0.82702 0.81309 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 2 C 0.29 14.81 2.56 44.25 0.11 14.92 16 3 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 4 C -0.55 -28.58 8.73 25.60 0.22 -28.35 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.85 11.32 21.45 0.24 -51.61 16 8 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 9 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 N -0.71 -29.59 5.07 -461.41 -2.34 -31.93 16 13 C 0.70 28.41 8.33 179.06 1.49 29.90 16 14 O -0.62 -29.77 13.18 -4.01 -0.05 -29.82 16 15 N -0.67 -21.44 5.30 -316.80 -1.68 -23.12 16 16 C 0.16 4.78 6.45 38.17 0.25 5.03 16 17 C -0.12 -3.77 8.72 22.37 0.20 -3.58 16 18 C -0.11 -2.35 10.04 22.27 0.22 -2.12 16 19 C -0.10 -1.68 10.04 22.28 0.22 -1.46 16 20 C -0.17 -3.32 8.26 22.34 0.18 -3.14 16 21 C 0.05 1.37 6.50 22.59 0.15 1.51 16 22 O -0.32 -7.37 9.79 -93.37 -0.91 -8.28 16 23 C 0.61 11.32 3.42 113.37 0.39 11.71 16 24 F -0.16 -2.71 15.57 44.97 0.70 -2.01 16 25 F -0.13 -2.35 17.53 44.97 0.79 -1.56 16 26 F -0.16 -2.98 15.57 44.97 0.70 -2.28 16 27 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 28 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.40 14.04 8.56 -92.71 -0.79 13.24 16 32 H 0.42 10.88 8.36 -92.71 -0.77 10.10 16 33 H 0.13 4.93 5.79 -2.91 -0.02 4.91 16 34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.15 2.39 5.10 -2.91 -0.01 2.38 16 Total: -1.00 -64.91 321.68 3.63 -61.28 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.39 Total: 26.23 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 4.55 Total: 19.59 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.78 Total: -106.65 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.97 Total: -38.11 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 2.19 Total: -5.85 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -64.91 3.63 -61.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154356392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.466 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds