Wall clock time and date at job start Tue Mar 31 2020 11:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46914 * 2 1 4 4 C 1.50691 * 109.47356 * 120.00293 * 2 1 3 5 5 H 1.07999 * 120.00415 * 119.99488 * 4 2 1 6 6 C 1.37878 * 120.00253 * 300.27868 * 4 2 1 7 7 N 1.31522 * 119.99832 * 359.71823 * 6 4 2 8 8 Si 1.86800 * 120.00459 * 179.72424 * 6 4 2 9 9 H 1.48501 * 109.46899 * 89.99454 * 8 6 4 10 10 H 1.48498 * 109.47276 * 209.99585 * 8 6 4 11 11 H 1.48499 * 109.47052 * 329.99611 * 8 6 4 12 12 N 1.46505 * 109.46613 * 240.00435 * 2 1 3 13 13 C 1.34773 * 119.99908 * 85.00529 * 12 2 1 14 14 O 1.21587 * 120.00360 * 359.97438 * 13 12 2 15 15 N 1.34774 * 119.99630 * 179.97438 * 13 12 2 16 16 C 1.39940 * 120.00125 * 175.38118 * 15 13 12 17 17 C 1.38921 * 120.04399 * 214.81872 * 16 15 13 18 18 C 1.38131 * 120.04371 * 179.76665 * 17 16 15 19 19 C 1.38211 * 120.11897 * 0.50705 * 18 17 16 20 20 C 1.38765 * 120.08853 * 359.74783 * 19 18 17 21 21 O 1.35894 * 120.02703 * 179.97438 * 20 19 18 22 22 C 1.42902 * 116.99642 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.47303 * 59.99671 * 22 21 20 24 24 F 1.39900 * 109.47175 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.47178 * 299.99898 * 22 21 20 26 26 C 1.38635 * 119.95326 * 359.97438 * 20 19 18 27 27 H 1.09000 * 109.47866 * 59.99479 * 1 2 3 28 28 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47131 * 299.99779 * 1 2 3 30 30 H 0.96997 * 119.99976 * 180.02562 * 7 6 4 31 31 H 0.96998 * 119.99795 * 264.99237 * 12 2 1 32 32 H 0.97002 * 120.00386 * 355.37692 * 15 13 12 33 33 H 1.08005 * 119.98266 * 0.02562 * 17 16 15 34 34 H 1.07999 * 119.93912 * 180.25616 * 18 17 16 35 35 H 1.08001 * 119.95732 * 179.76902 * 19 18 17 36 36 H 1.08004 * 120.05802 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1313 6 6 1.6946 -0.2428 2.4827 7 7 0.9385 0.8265 2.6034 8 14 2.3109 -1.1279 4.0078 9 1 3.6178 -0.5547 4.4186 10 1 1.3286 -0.9598 5.1087 11 1 2.4764 -2.5730 3.7085 12 7 2.0182 -0.6906 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8575 1.1615 -2.4118 15 7 2.5966 -0.6533 -3.4575 16 6 2.6390 0.0179 -4.6847 17 6 2.3849 -0.6715 -5.8637 18 6 2.4220 -0.0079 -7.0746 19 6 2.7221 1.3405 -7.1176 20 6 2.9819 2.0332 -5.9436 21 8 3.2773 3.3589 -5.9873 22 6 3.3024 3.9757 -7.2761 23 9 2.0455 3.8505 -7.8776 24 9 3.6212 5.3309 -7.1384 25 9 4.2657 3.3493 -8.0743 26 6 2.9399 1.3717 -4.7259 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7011 1.1557 3.4845 31 1 2.2489 -1.6317 -1.1528 32 1 2.8909 -1.5757 -3.3989 33 1 2.1541 -1.7262 -5.8332 34 1 2.2202 -0.5447 -7.9898 35 1 2.7541 1.8559 -8.0661 36 1 3.1415 1.9093 -3.8111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154519203.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:56 Heat of formation + Delta-G solvation = -213.854510 kcal Electronic energy + Delta-G solvation = -26228.716817 eV Core-core repulsion = 21683.574829 eV Total energy + Delta-G solvation = -4545.141988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.50443 -49.22258 -49.08210 -41.82994 -40.81982 -38.83610 -36.84720 -35.57825 -34.33526 -31.75273 -31.26135 -29.72622 -27.33635 -27.05144 -24.63578 -23.79434 -22.89042 -21.63684 -20.79904 -20.23368 -20.22024 -19.71821 -18.52068 -17.82641 -17.43270 -17.07796 -16.66179 -16.38190 -16.23692 -15.89425 -15.87003 -15.65176 -15.54953 -15.49144 -15.28933 -15.19760 -15.09920 -14.53994 -14.38495 -14.30734 -13.83758 -13.37521 -12.97033 -12.89225 -12.80899 -12.74189 -12.59317 -12.25881 -12.11594 -11.44483 -11.11269 -11.08246 -10.60348 -9.90207 -9.71441 -9.15537 -8.17284 -6.34816 0.10402 0.26283 0.41946 1.46249 1.46965 1.57239 1.64367 1.80228 2.10668 2.42425 2.64520 2.71524 2.95598 3.13575 3.41235 3.66510 3.87848 4.07143 4.17116 4.37042 4.60200 4.75160 4.93050 5.01961 5.08973 5.17334 5.22912 5.30951 5.39859 5.53481 5.59809 5.65590 5.84018 5.96449 6.09237 6.23164 6.73085 7.20446 7.33980 7.64245 8.89200 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.002696 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.225684 B =10383.607507 C =11024.898501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.710 5.710 13 C 0.690 3.310 14 O -0.624 6.624 15 N -0.672 5.672 16 C 0.195 3.805 17 C -0.152 4.152 18 C -0.048 4.048 19 C -0.214 4.214 20 C 0.105 3.895 21 O -0.329 6.329 22 C 0.610 3.390 23 F -0.162 7.162 24 F -0.132 7.132 25 F -0.159 7.159 26 C -0.161 4.161 27 H 0.010 0.990 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.428 0.572 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.147 0.853 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -4.146 -22.890 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.363 5.363 13 C 0.391 3.609 14 O -0.505 6.505 15 N -0.321 5.321 16 C 0.098 3.902 17 C -0.173 4.173 18 C -0.066 4.066 19 C -0.233 4.233 20 C 0.062 3.938 21 O -0.249 6.249 22 C 0.519 3.481 23 F -0.144 7.144 24 F -0.114 7.114 25 F -0.141 7.141 26 C -0.183 4.183 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.268 0.732 33 H 0.187 0.813 34 H 0.197 0.803 35 H 0.164 0.836 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.621 -2.875 -22.553 23.200 hybrid contribution 0.380 -0.224 1.046 1.135 sum 5.001 -3.100 -21.507 22.297 Atomic orbital electron populations 1.21921 0.98350 0.99556 0.99510 1.18264 0.90940 0.91681 0.80682 0.98348 1.21536 1.32580 1.13768 0.90562 0.90533 1.25810 0.94831 0.95623 1.02360 1.70061 1.36880 1.24014 1.24646 0.85315 0.77651 0.79249 0.77924 1.20500 1.21086 1.18154 1.45429 1.68594 1.14049 1.08221 1.16301 0.78443 0.84946 0.81232 1.90884 1.58609 1.16288 1.84681 1.42438 1.67334 1.17092 1.05272 1.17386 0.96642 0.90530 0.85602 1.21321 1.03632 1.02523 0.89830 1.21183 0.94312 0.92145 0.98935 1.21695 1.07893 0.97777 0.95920 1.18575 1.00337 0.79392 0.95454 1.86413 1.86003 1.24746 1.27758 1.19200 0.74899 0.76678 0.77285 1.93300 1.41833 1.95591 1.83666 1.93305 1.92702 1.29920 1.95441 1.93299 1.64232 1.82315 1.74219 1.20413 1.06450 0.95303 0.96093 0.97107 0.93868 0.91448 0.92541 0.75871 0.73249 0.81271 0.80325 0.83564 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.29 14.75 2.56 44.24 0.11 14.87 16 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.10 16 4 C -0.55 -28.29 8.73 25.60 0.22 -28.06 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.74 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.36 11.31 21.45 0.24 -52.11 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 12 N -0.71 -28.45 5.07 -461.43 -2.34 -30.79 16 13 C 0.69 27.40 8.37 179.06 1.50 28.90 16 14 O -0.62 -31.07 13.44 -3.99 -0.05 -31.13 16 15 N -0.67 -18.56 5.34 -317.24 -1.70 -20.26 16 16 C 0.19 5.30 6.30 38.13 0.24 5.54 16 17 C -0.15 -2.71 9.96 22.41 0.22 -2.49 16 18 C -0.05 -0.74 10.03 22.24 0.22 -0.51 16 19 C -0.21 -4.44 8.26 22.39 0.18 -4.25 16 20 C 0.10 2.99 6.48 22.49 0.15 3.13 16 21 O -0.33 -9.51 10.37 -92.36 -0.96 -10.47 16 22 C 0.61 13.55 3.42 113.37 0.39 13.94 16 23 F -0.16 -3.39 15.56 44.97 0.70 -2.69 16 24 F -0.13 -2.89 17.53 44.97 0.79 -2.11 16 25 F -0.16 -3.09 15.56 44.97 0.70 -2.39 16 26 C -0.16 -5.36 8.63 22.49 0.19 -5.16 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 3.73 6.06 -2.39 -0.01 3.72 16 30 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.41 13.02 8.56 -92.71 -0.79 12.22 16 32 H 0.43 7.89 8.84 -92.71 -0.82 7.07 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 2.51 5.09 -2.91 -0.01 2.50 16 36 H 0.12 4.86 6.22 -2.91 -0.02 4.84 16 Total: -1.00 -70.17 323.14 3.52 -66.65 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.44 Total: 20.98 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 4.55 Total: 20.97 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.79 Total: -103.16 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.01 Total: -41.59 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 2.19 Total: -7.18 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -70.17 3.52 -66.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154519203.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.204 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds