Wall clock time and date at job start Tue Mar 31 2020 11:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47019 * 2 1 4 4 C 1.50698 * 109.46976 * 240.00047 * 2 1 3 5 5 H 1.08005 * 119.99782 * 240.00513 * 4 2 1 6 6 C 1.37869 * 120.00191 * 60.00234 * 4 2 1 7 7 N 1.31510 * 120.00210 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00198 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47020 * 59.99637 * 8 6 4 10 10 H 1.48502 * 109.47036 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46842 * 299.99910 * 8 6 4 12 12 N 1.46499 * 109.46680 * 120.00043 * 2 1 3 13 13 C 1.34778 * 120.00301 * 274.99607 * 12 2 1 14 14 O 1.21590 * 119.99825 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99972 * 180.02562 * 13 12 2 16 16 C 1.39940 * 119.99661 * 174.68431 * 15 13 12 17 17 C 1.38928 * 120.04295 * 146.42640 * 16 15 13 18 18 C 1.38117 * 120.04214 * 179.76917 * 17 16 15 19 19 C 1.38220 * 120.12446 * 0.51103 * 18 17 16 20 20 C 1.38765 * 120.07969 * 359.74418 * 19 18 17 21 21 O 1.35896 * 120.01695 * 179.97438 * 20 19 18 22 22 C 1.42905 * 116.99972 * 0.02562 * 21 20 19 23 23 F 1.39896 * 109.47021 * 60.00374 * 22 21 20 24 24 F 1.39901 * 109.46813 * 180.02562 * 22 21 20 25 25 F 1.39894 * 109.47403 * 300.00005 * 22 21 20 26 26 C 1.38624 * 119.95961 * 0.02562 * 20 19 18 27 27 H 1.09001 * 109.47453 * 300.00343 * 1 2 3 28 28 H 1.09005 * 109.47177 * 59.99930 * 1 2 3 29 29 H 1.08999 * 109.47491 * 180.02562 * 1 2 3 30 30 H 0.96998 * 120.00747 * 180.02562 * 7 6 4 31 31 H 0.97003 * 120.00087 * 95.00049 * 12 2 1 32 32 H 0.96994 * 119.99948 * 354.68412 * 15 13 12 33 33 H 1.08004 * 119.97398 * 0.02807 * 17 16 15 34 34 H 1.08000 * 119.94128 * 180.25611 * 18 17 16 35 35 H 1.08002 * 119.95821 * 179.72506 * 19 18 17 36 36 H 1.07997 * 120.05792 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4198 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8575 1.1613 2.4119 15 7 2.5966 -0.6536 3.4575 16 6 2.8362 0.0672 4.6328 17 6 2.6153 -0.5257 5.8696 18 6 2.8562 0.1842 7.0296 19 6 3.3074 1.4890 6.9634 20 6 3.5248 2.0880 5.7307 21 8 3.9679 3.3711 5.6670 22 6 4.1895 4.0433 6.9085 23 9 5.1525 3.3494 7.6490 24 9 4.6397 5.3444 6.6604 25 9 2.9929 4.0943 7.6314 26 6 3.2886 1.3771 4.5643 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7082 1.1609 -3.4843 31 1 2.2489 -1.6318 1.1526 32 1 2.7542 -1.6104 3.4347 33 1 2.2589 -1.5438 5.9240 34 1 2.6879 -0.2797 7.9903 35 1 3.4908 2.0431 7.8721 36 1 3.4575 1.8416 3.6041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154519317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:59 Heat of formation + Delta-G solvation = -193.697061 kcal Electronic energy + Delta-G solvation = -26234.941131 eV Core-core repulsion = 21690.673236 eV Total energy + Delta-G solvation = -4544.267895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.60249 -48.31898 -48.19445 -40.64818 -39.54495 -37.68060 -35.12543 -34.18663 -32.47436 -30.71038 -29.81975 -28.25870 -26.11889 -25.29276 -23.43703 -22.74970 -21.40026 -19.96083 -19.76435 -19.31310 -19.14702 -18.27403 -17.34983 -16.48167 -16.04068 -15.69605 -15.38112 -15.22785 -14.97566 -14.88335 -14.65168 -14.59832 -14.51694 -14.34652 -14.27647 -14.06300 -13.73750 -13.37013 -13.19899 -12.48020 -12.40466 -11.95923 -11.79135 -11.53872 -11.13520 -11.02112 -10.82627 -10.38871 -10.27166 -10.19657 -9.56153 -9.10298 -8.71827 -8.60817 -8.25759 -7.89063 -6.16106 -4.25969 1.09940 1.24501 1.35925 2.64680 3.04995 3.23306 3.29135 3.30566 3.40261 3.63301 3.79238 3.92669 4.28833 4.56127 4.74717 4.87390 4.95009 5.08267 5.16504 5.35475 5.65974 5.90519 6.07617 6.21200 6.26848 6.62604 6.74304 6.92568 6.99793 7.04658 7.14967 7.37736 7.57223 7.76547 7.92335 8.10563 8.64857 8.77193 9.12694 9.41975 10.89871 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002742 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.598638 B =10208.865621 C =10871.358245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.716 5.716 13 C 0.690 3.310 14 O -0.577 6.577 15 N -0.694 5.694 16 C 0.221 3.779 17 C -0.173 4.173 18 C -0.059 4.059 19 C -0.220 4.220 20 C 0.123 3.877 21 O -0.306 6.306 22 C 0.604 3.396 23 F -0.167 7.167 24 F -0.133 7.133 25 F -0.166 7.166 26 C -0.130 4.130 27 H 0.015 0.985 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.407 0.593 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -1.050 20.509 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.366 5.366 13 C 0.390 3.610 14 O -0.454 6.454 15 N -0.342 5.342 16 C 0.124 3.876 17 C -0.194 4.194 18 C -0.078 4.078 19 C -0.239 4.239 20 C 0.081 3.919 21 O -0.226 6.226 22 C 0.513 3.487 23 F -0.149 7.149 24 F -0.115 7.115 25 F -0.148 7.148 26 C -0.151 4.151 27 H 0.034 0.966 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.242 0.758 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.423 0.285 20.089 20.810 hybrid contribution 0.468 -1.185 -0.579 1.399 sum 5.891 -0.900 19.510 20.400 Atomic orbital electron populations 1.22113 0.98460 0.99142 1.01031 1.18716 0.90922 0.93787 0.78738 0.93165 1.21152 1.32749 1.13375 0.90213 0.92079 1.24875 0.94764 0.94948 0.99042 1.69886 1.35593 1.22344 1.24117 0.86483 0.79169 0.79543 0.81740 1.20159 1.21087 1.20153 1.45900 1.68321 1.13472 1.08957 1.16202 0.78713 0.85617 0.80422 1.90921 1.56322 1.14234 1.83925 1.42909 1.69881 1.11510 1.09860 1.17105 0.93950 0.91005 0.85563 1.20914 1.05972 1.01772 0.90719 1.20619 0.96279 0.92762 0.98142 1.21375 1.08819 0.98147 0.95572 1.18408 0.97997 0.80599 0.94926 1.86457 1.81730 1.26969 1.27405 1.19347 0.74917 0.76987 0.77429 1.93286 1.64696 1.79360 1.77574 1.93303 1.88979 1.34990 1.94190 1.93295 1.46923 1.96167 1.78397 1.20409 1.02828 0.94057 0.97797 0.96555 0.89022 0.95470 0.92417 0.78048 0.75757 0.85041 0.84862 0.85225 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.28 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.72 -14.23 5.07 -59.82 -0.30 -14.54 16 13 C 0.69 13.40 8.27 -86.92 -0.72 12.68 16 14 O -0.58 -13.58 13.69 5.29 0.07 -13.50 16 15 N -0.69 -9.89 5.35 -14.24 -0.08 -9.96 16 16 C 0.22 3.12 6.28 -83.71 -0.53 2.60 16 17 C -0.17 -1.87 9.96 -39.37 -0.39 -2.26 16 18 C -0.06 -0.59 10.03 -39.63 -0.40 -0.99 16 19 C -0.22 -2.55 8.26 -39.39 -0.33 -2.88 16 20 C 0.12 1.75 6.48 -39.24 -0.25 1.50 16 21 O -0.31 -4.29 10.37 -19.41 -0.20 -4.49 16 22 C 0.60 6.86 3.42 101.05 0.35 7.20 16 23 F -0.17 -1.74 15.56 2.25 0.04 -1.70 16 24 F -0.13 -1.47 17.53 2.25 0.04 -1.43 16 25 F -0.17 -1.83 15.56 2.25 0.04 -1.79 16 26 C -0.13 -2.07 8.59 -39.25 -0.34 -2.41 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 31 H 0.39 6.44 8.56 -40.82 -0.35 6.09 16 32 H 0.41 4.21 8.83 -40.82 -0.36 3.85 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.31 5.09 -52.49 -0.27 1.04 16 36 H 0.15 2.88 6.41 -52.49 -0.34 2.54 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -30.38 323.43 -6.01 -36.38 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.25 Total: 8.35 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.83 Total: 6.44 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.25 Total: -48.37 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.13 Total: -17.99 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.11 Total: -4.93 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.38 -6.01 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154519317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.313 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds