Wall clock time and date at job start Tue Mar 31 2020 11:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47019 * 2 1 4 4 C 1.50698 * 109.46976 * 240.00047 * 2 1 3 5 5 H 1.08005 * 119.99782 * 240.00513 * 4 2 1 6 6 C 1.37869 * 120.00191 * 60.00234 * 4 2 1 7 7 N 1.31510 * 120.00210 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00198 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47020 * 59.99637 * 8 6 4 10 10 H 1.48502 * 109.47036 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46842 * 299.99910 * 8 6 4 12 12 N 1.46499 * 109.46680 * 120.00043 * 2 1 3 13 13 C 1.34778 * 120.00301 * 274.99607 * 12 2 1 14 14 O 1.21590 * 119.99825 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99972 * 180.02562 * 13 12 2 16 16 C 1.39940 * 119.99661 * 174.68431 * 15 13 12 17 17 C 1.38928 * 120.04295 * 146.42640 * 16 15 13 18 18 C 1.38117 * 120.04214 * 179.76917 * 17 16 15 19 19 C 1.38220 * 120.12446 * 0.51103 * 18 17 16 20 20 C 1.38765 * 120.07969 * 359.74418 * 19 18 17 21 21 O 1.35896 * 120.01695 * 179.97438 * 20 19 18 22 22 C 1.42905 * 116.99972 * 0.02562 * 21 20 19 23 23 F 1.39896 * 109.47021 * 60.00374 * 22 21 20 24 24 F 1.39901 * 109.46813 * 180.02562 * 22 21 20 25 25 F 1.39894 * 109.47403 * 300.00005 * 22 21 20 26 26 C 1.38624 * 119.95961 * 0.02562 * 20 19 18 27 27 H 1.09001 * 109.47453 * 300.00343 * 1 2 3 28 28 H 1.09005 * 109.47177 * 59.99930 * 1 2 3 29 29 H 1.08999 * 109.47491 * 180.02562 * 1 2 3 30 30 H 0.96998 * 120.00747 * 180.02562 * 7 6 4 31 31 H 0.97003 * 120.00087 * 95.00049 * 12 2 1 32 32 H 0.96994 * 119.99948 * 354.68412 * 15 13 12 33 33 H 1.08004 * 119.97398 * 0.02807 * 17 16 15 34 34 H 1.08000 * 119.94128 * 180.25611 * 18 17 16 35 35 H 1.08002 * 119.95821 * 179.72506 * 19 18 17 36 36 H 1.07997 * 120.05792 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4198 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8575 1.1613 2.4119 15 7 2.5966 -0.6536 3.4575 16 6 2.8362 0.0672 4.6328 17 6 2.6153 -0.5257 5.8696 18 6 2.8562 0.1842 7.0296 19 6 3.3074 1.4890 6.9634 20 6 3.5248 2.0880 5.7307 21 8 3.9679 3.3711 5.6670 22 6 4.1895 4.0433 6.9085 23 9 5.1525 3.3494 7.6490 24 9 4.6397 5.3444 6.6604 25 9 2.9929 4.0943 7.6314 26 6 3.2886 1.3771 4.5643 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7082 1.1609 -3.4843 31 1 2.2489 -1.6318 1.1526 32 1 2.7542 -1.6104 3.4347 33 1 2.2589 -1.5438 5.9240 34 1 2.6879 -0.2797 7.9903 35 1 3.4908 2.0431 7.8721 36 1 3.4575 1.8416 3.6041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154519317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:58 Heat of formation + Delta-G solvation = -214.536601 kcal Electronic energy + Delta-G solvation = -26235.844801 eV Core-core repulsion = 21690.673236 eV Total energy + Delta-G solvation = -4545.171566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.50717 -49.22425 -49.08481 -41.83488 -40.82559 -38.84238 -36.84734 -35.58421 -34.33520 -31.75904 -31.26912 -29.73330 -27.33646 -27.05640 -24.65637 -23.80116 -22.88286 -21.62885 -20.80942 -20.23122 -20.21809 -19.72895 -18.52050 -17.85191 -17.42175 -17.12356 -16.63420 -16.38119 -16.26138 -15.87772 -15.81499 -15.67531 -15.54701 -15.49121 -15.28715 -15.20010 -15.11559 -14.53757 -14.40390 -14.30093 -13.84345 -13.39855 -12.98755 -12.87817 -12.80867 -12.72933 -12.57546 -12.26337 -12.14707 -11.46247 -11.16084 -11.10861 -10.60094 -9.88835 -9.73026 -9.14387 -8.17248 -6.34984 0.10364 0.25276 0.41543 1.45943 1.48410 1.55775 1.63838 1.80116 2.09910 2.42356 2.65410 2.71236 2.95593 3.13488 3.40345 3.65900 3.87782 4.05345 4.15963 4.36543 4.58054 4.74710 4.92913 5.01415 5.08627 5.15921 5.21327 5.30562 5.39744 5.53007 5.59196 5.64853 5.83872 5.95603 6.08952 6.22925 6.72582 7.19858 7.33804 7.63556 8.89049 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002742 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.598638 B =10208.865621 C =10871.358245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.262 1.262 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.711 5.711 13 C 0.690 3.310 14 O -0.624 6.624 15 N -0.672 5.672 16 C 0.198 3.802 17 C -0.154 4.154 18 C -0.046 4.046 19 C -0.215 4.215 20 C 0.107 3.893 21 O -0.329 6.329 22 C 0.610 3.390 23 F -0.158 7.158 24 F -0.132 7.132 25 F -0.162 7.162 26 C -0.162 4.162 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.428 0.572 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.147 0.853 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -3.807 22.604 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.363 5.363 13 C 0.391 3.609 14 O -0.504 6.504 15 N -0.321 5.321 16 C 0.101 3.899 17 C -0.174 4.174 18 C -0.064 4.064 19 C -0.234 4.234 20 C 0.064 3.936 21 O -0.250 6.250 22 C 0.520 3.480 23 F -0.140 7.140 24 F -0.114 7.114 25 F -0.144 7.144 26 C -0.183 4.183 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.268 0.732 33 H 0.188 0.812 34 H 0.197 0.803 35 H 0.165 0.835 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.872 -2.538 22.245 23.147 hybrid contribution 0.370 -0.271 -1.077 1.171 sum 6.243 -2.809 21.168 22.248 Atomic orbital electron populations 1.21925 0.98314 0.99574 0.99527 1.18263 0.90972 0.91652 0.80666 0.98383 1.21504 1.32778 1.13728 0.90584 0.90574 1.25801 0.94848 0.95571 1.02341 1.70047 1.36869 1.23921 1.24730 0.85372 0.78586 0.78739 0.77470 1.18678 1.21337 1.19645 1.45440 1.68644 1.14154 1.08064 1.16301 0.78392 0.84989 0.81241 1.90901 1.58156 1.16550 1.84830 1.42476 1.68771 1.12343 1.08549 1.17376 0.95344 0.90655 0.86476 1.21309 1.03858 1.03192 0.89083 1.21187 0.93761 0.91697 0.99762 1.21691 1.07776 0.99097 0.94826 1.18540 0.98878 0.80690 0.95450 1.86412 1.81965 1.27427 1.29163 1.19193 0.75113 0.76859 0.76875 1.93298 1.64360 1.79190 1.77186 1.93305 1.88969 1.34911 1.94182 1.93298 1.46789 1.96149 1.78137 1.20256 1.05608 0.95599 0.96875 0.97072 0.91455 0.93837 0.92519 0.75873 0.73229 0.81247 0.80283 0.83527 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.29 14.79 2.56 44.24 0.11 14.91 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 4 C -0.55 -28.45 8.73 25.60 0.22 -28.23 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.40 11.32 21.44 0.24 -52.16 16 8 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 9 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 12 N -0.71 -28.54 5.07 -461.42 -2.34 -30.89 16 13 C 0.69 27.48 8.27 179.05 1.48 28.96 16 14 O -0.62 -31.19 13.69 -4.00 -0.05 -31.24 16 15 N -0.67 -18.61 5.35 -317.22 -1.70 -20.30 16 16 C 0.20 5.40 6.28 38.13 0.24 5.64 16 17 C -0.15 -2.74 9.96 22.41 0.22 -2.52 16 18 C -0.05 -0.71 10.03 22.24 0.22 -0.49 16 19 C -0.21 -4.46 8.26 22.39 0.18 -4.28 16 20 C 0.11 3.05 6.48 22.49 0.15 3.20 16 21 O -0.33 -9.55 10.37 -92.38 -0.96 -10.51 16 22 C 0.61 13.59 3.42 113.37 0.39 13.98 16 23 F -0.16 -3.09 15.56 44.97 0.70 -2.39 16 24 F -0.13 -2.90 17.53 44.97 0.79 -2.12 16 25 F -0.16 -3.39 15.56 44.97 0.70 -2.69 16 26 C -0.16 -5.40 8.59 22.48 0.19 -5.20 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 3.73 6.07 -2.38 -0.01 3.71 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.41 13.07 8.56 -92.71 -0.79 12.28 16 32 H 0.43 7.87 8.83 -92.71 -0.82 7.05 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.15 2.52 5.09 -2.91 -0.01 2.50 16 36 H 0.11 4.65 6.41 -2.91 -0.02 4.63 16 Total: -1.00 -70.46 323.43 3.50 -66.96 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.44 Total: 20.85 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 4.53 Total: 21.09 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.79 Total: -103.35 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.01 Total: -41.75 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 2.19 Total: -7.19 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -70.46 3.50 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154519317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.578 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds