Wall clock time and date at job start Tue Mar 31 2020 11:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47140 * 119.99793 * 2 1 3 5 5 H 1.08004 * 120.00110 * 120.00167 * 4 2 1 6 6 C 1.37884 * 120.00214 * 299.99958 * 4 2 1 7 7 N 1.31518 * 119.99556 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47182 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47195 * 300.00068 * 8 6 4 11 11 H 1.48501 * 109.47151 * 60.00204 * 8 6 4 12 12 N 1.46500 * 109.47355 * 240.00052 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.99946 * 12 2 1 14 14 O 1.21596 * 119.99618 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99931 * 180.02562 * 13 12 2 16 16 C 1.40160 * 119.99996 * 175.38034 * 15 13 12 17 17 C 1.38828 * 120.01433 * 214.81004 * 16 15 13 18 18 C 1.38092 * 119.98459 * 179.79001 * 17 16 15 19 19 C 1.38711 * 120.01732 * 0.48197 * 18 17 16 20 20 O 1.35980 * 119.99029 * 179.72516 * 19 18 17 21 21 C 1.42901 * 116.99861 * 0.02562 * 20 19 18 22 22 F 1.39901 * 109.46598 * 60.00154 * 21 20 19 23 23 F 1.39896 * 109.47153 * 179.97438 * 21 20 19 24 24 F 1.39897 * 109.47310 * 300.00580 * 21 20 19 25 25 C 1.38713 * 120.02393 * 359.75312 * 19 18 17 26 26 C 1.38094 * 120.01809 * 0.02562 * 25 19 18 27 27 H 1.08996 * 109.47461 * 300.00486 * 1 2 3 28 28 H 1.08999 * 109.47406 * 60.00544 * 1 2 3 29 29 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.96994 * 119.99627 * 264.99901 * 12 2 1 32 32 H 0.97000 * 120.00231 * 355.37424 * 15 13 12 33 33 H 1.08008 * 120.00883 * 0.02562 * 17 16 15 34 34 H 1.08004 * 119.99574 * 180.23508 * 18 17 16 35 35 H 1.08002 * 119.99316 * 180.02562 * 25 19 18 36 36 H 1.08001 * 120.00975 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 1.8259 -0.4204 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1208 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8574 1.1614 -2.4118 15 7 2.5959 -0.6537 -3.4576 16 6 2.6383 0.0185 -4.6868 17 6 2.3836 -0.6710 -5.8645 18 6 2.4213 -0.0071 -7.0748 19 6 2.7233 1.3461 -7.1149 20 8 2.7657 1.9981 -8.3074 21 6 2.4882 1.2273 -9.4783 22 9 1.1992 0.6909 -9.3887 23 9 2.5738 2.0481 -10.6080 24 9 3.4192 0.1885 -9.5844 25 6 2.9827 2.0345 -5.9389 26 6 2.9409 1.3729 -4.7275 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7087 1.1614 3.4843 31 1 2.2490 -1.6317 -1.1525 32 1 2.8897 -1.5763 -3.3990 33 1 2.1523 -1.7255 -5.8339 34 1 2.2194 -0.5425 -7.9908 35 1 3.2174 3.0882 -5.9706 36 1 3.1432 1.9089 -3.8120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156595583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:01 Heat of formation + Delta-G solvation = -193.843492 kcal Electronic energy + Delta-G solvation = -25937.731667 eV Core-core repulsion = 21393.457422 eV Total energy + Delta-G solvation = -4544.274245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.68469 -48.41440 -48.27173 -40.62435 -39.61171 -37.65679 -35.05104 -34.10628 -32.43937 -31.21046 -29.64923 -28.18354 -26.07286 -25.29474 -23.29058 -22.89933 -21.35457 -20.03820 -19.83685 -19.39029 -19.23075 -18.18993 -17.63734 -16.78122 -16.02708 -15.49094 -15.38328 -15.16159 -15.04999 -14.81809 -14.73122 -14.64836 -14.50244 -14.36774 -14.25519 -14.18564 -13.49681 -13.39456 -13.15852 -12.79026 -12.44549 -12.40717 -11.76181 -11.30290 -11.14606 -11.02033 -10.80418 -10.38939 -10.27571 -10.00913 -9.53728 -9.11980 -9.10503 -8.61513 -8.16737 -7.77554 -6.17048 -4.26712 1.11675 1.18162 1.29833 2.61439 3.05293 3.22506 3.28347 3.29793 3.40432 3.54991 3.74122 3.88655 4.28103 4.50631 4.61671 4.81137 5.03290 5.15563 5.18775 5.43377 5.61108 5.81015 5.95694 6.25840 6.41283 6.53926 6.74193 6.92648 7.00735 7.05409 7.15978 7.38136 7.56720 7.76569 7.92625 8.10121 8.65334 8.77277 9.13762 9.41327 10.88929 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.044897 B = 0.002259 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.506004 B =12389.847384 C =12515.694108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.696 5.696 16 C 0.169 3.831 17 C -0.117 4.117 18 C -0.169 4.169 19 C 0.071 3.929 20 O -0.310 6.310 21 C 0.603 3.397 22 F -0.166 7.166 23 F -0.135 7.135 24 F -0.167 7.167 25 C -0.100 4.100 26 C -0.086 4.086 27 H 0.091 0.909 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.404 0.596 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -2.982 -21.800 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.393 3.607 14 O -0.459 6.459 15 N -0.344 5.344 16 C 0.072 3.928 17 C -0.138 4.138 18 C -0.188 4.188 19 C 0.028 3.972 20 O -0.231 6.231 21 C 0.512 3.488 22 F -0.148 7.148 23 F -0.117 7.117 24 F -0.149 7.149 25 C -0.120 4.120 26 C -0.107 4.107 27 H 0.110 0.890 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.239 0.761 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.753 -1.616 -21.594 21.977 hybrid contribution 0.373 -1.648 0.548 1.777 sum 4.127 -3.265 -21.046 21.694 Atomic orbital electron populations 1.22110 0.98478 0.99140 1.01003 1.18699 0.90893 0.93757 0.78758 0.93190 1.21159 1.32698 1.13355 0.90235 0.92108 1.24883 0.94773 0.94962 0.99050 1.69893 1.35620 1.22353 1.24105 0.86482 0.79147 0.79559 0.81740 1.21094 1.20166 1.20165 1.45887 1.68320 1.13367 1.09194 1.16166 0.78625 0.85523 0.80404 1.90873 1.57066 1.14084 1.83909 1.42876 1.68590 1.16422 1.06502 1.17591 0.98146 0.92452 0.84614 1.20643 1.02088 1.00623 0.90432 1.21178 1.05455 0.92664 0.99536 1.18632 1.04477 0.91583 0.82489 1.86419 1.86240 1.37543 1.12851 1.19370 0.74833 0.74962 0.79648 1.93302 1.39483 1.86163 1.95898 1.93293 1.96085 1.73281 1.49020 1.93291 1.66423 1.59252 1.95968 1.20349 1.02512 1.00728 0.88363 1.21362 0.97444 0.93735 0.98120 0.89039 0.96555 0.95497 0.92428 0.78082 0.76069 0.84835 0.84986 0.84246 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.28 6.90 2.56 -69.09 -0.18 6.73 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.72 -14.13 5.07 -59.82 -0.30 -14.44 16 13 C 0.69 13.19 8.37 -86.92 -0.73 12.47 16 14 O -0.58 -13.22 13.44 5.28 0.07 -13.15 16 15 N -0.70 -9.79 5.35 -14.19 -0.08 -9.87 16 16 C 0.17 2.32 6.30 -83.61 -0.53 1.80 16 17 C -0.12 -1.32 9.96 -39.42 -0.39 -1.71 16 18 C -0.17 -1.90 8.25 -39.46 -0.33 -2.23 16 19 C 0.07 0.86 6.48 -39.23 -0.25 0.60 16 20 O -0.31 -3.53 10.38 -19.68 -0.20 -3.73 16 21 C 0.60 5.86 3.42 101.05 0.35 6.21 16 22 F -0.17 -1.64 15.56 2.25 0.04 -1.61 16 23 F -0.14 -1.25 17.53 2.25 0.04 -1.21 16 24 F -0.17 -1.57 15.56 2.25 0.04 -1.53 16 25 C -0.10 -1.27 9.98 -39.46 -0.39 -1.66 16 26 C -0.09 -1.25 8.69 -39.41 -0.34 -1.60 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.42 8.56 -40.82 -0.35 6.07 16 32 H 0.40 4.23 8.84 -40.82 -0.36 3.87 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.13 1.28 5.09 -52.48 -0.27 1.01 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.16 2.63 6.22 -52.49 -0.33 2.30 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -29.57 323.18 -6.02 -35.58 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.24 Total: 8.72 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.85 Total: 4.94 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.25 Total: -48.02 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.13 Total: -16.88 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.11 Total: -4.34 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.57 -6.02 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156595583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.260 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds