Wall clock time and date at job start Tue Mar 31 2020 11:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 C 1.50694 * 109.47140 * 119.99793 * 2 1 3 5 5 H 1.08004 * 120.00110 * 120.00167 * 4 2 1 6 6 C 1.37884 * 120.00214 * 299.99958 * 4 2 1 7 7 N 1.31518 * 119.99556 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00206 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47182 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47195 * 300.00068 * 8 6 4 11 11 H 1.48501 * 109.47151 * 60.00204 * 8 6 4 12 12 N 1.46500 * 109.47355 * 240.00052 * 2 1 3 13 13 C 1.34777 * 120.00223 * 84.99946 * 12 2 1 14 14 O 1.21596 * 119.99618 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99931 * 180.02562 * 13 12 2 16 16 C 1.40160 * 119.99996 * 175.38034 * 15 13 12 17 17 C 1.38828 * 120.01433 * 214.81004 * 16 15 13 18 18 C 1.38092 * 119.98459 * 179.79001 * 17 16 15 19 19 C 1.38711 * 120.01732 * 0.48197 * 18 17 16 20 20 O 1.35980 * 119.99029 * 179.72516 * 19 18 17 21 21 C 1.42901 * 116.99861 * 0.02562 * 20 19 18 22 22 F 1.39901 * 109.46598 * 60.00154 * 21 20 19 23 23 F 1.39896 * 109.47153 * 179.97438 * 21 20 19 24 24 F 1.39897 * 109.47310 * 300.00580 * 21 20 19 25 25 C 1.38713 * 120.02393 * 359.75312 * 19 18 17 26 26 C 1.38094 * 120.01809 * 0.02562 * 25 19 18 27 27 H 1.08996 * 109.47461 * 300.00486 * 1 2 3 28 28 H 1.08999 * 109.47406 * 60.00544 * 1 2 3 29 29 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.96994 * 119.99627 * 264.99901 * 12 2 1 32 32 H 0.97000 * 120.00231 * 355.37424 * 15 13 12 33 33 H 1.08008 * 120.00883 * 0.02562 * 17 16 15 34 34 H 1.08004 * 119.99574 * 180.23508 * 18 17 16 35 35 H 1.08002 * 119.99316 * 180.02562 * 25 19 18 36 36 H 1.08001 * 120.00975 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 1.8259 -0.4204 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1208 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8574 1.1614 -2.4118 15 7 2.5959 -0.6537 -3.4576 16 6 2.6383 0.0185 -4.6868 17 6 2.3836 -0.6710 -5.8645 18 6 2.4213 -0.0071 -7.0748 19 6 2.7233 1.3461 -7.1149 20 8 2.7657 1.9981 -8.3074 21 6 2.4882 1.2273 -9.4783 22 9 1.1992 0.6909 -9.3887 23 9 2.5738 2.0481 -10.6080 24 9 3.4192 0.1885 -9.5844 25 6 2.9827 2.0345 -5.9389 26 6 2.9409 1.3729 -4.7275 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7087 1.1614 3.4843 31 1 2.2490 -1.6317 -1.1525 32 1 2.8897 -1.5763 -3.3990 33 1 2.1523 -1.7255 -5.8339 34 1 2.2194 -0.5425 -7.9908 35 1 3.2174 3.0882 -5.9706 36 1 3.1432 1.9089 -3.8120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156595583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:00 Heat of formation + Delta-G solvation = -213.247112 kcal Electronic energy + Delta-G solvation = -25938.573071 eV Core-core repulsion = 21393.457422 eV Total energy + Delta-G solvation = -4545.115649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.45550 -49.17359 -49.04224 -41.76903 -40.82365 -38.80174 -36.77783 -35.46109 -34.27850 -32.18885 -31.19712 -29.55299 -27.32221 -26.93882 -24.35286 -24.05910 -22.80215 -21.63553 -20.77986 -20.22368 -20.16897 -19.57659 -18.86586 -17.87456 -17.63085 -16.92616 -16.57323 -16.25369 -16.09468 -15.84397 -15.76248 -15.60083 -15.50606 -15.44626 -15.15769 -15.13679 -15.00060 -14.44069 -14.33772 -14.22952 -13.86672 -13.69639 -13.37610 -12.97883 -12.84538 -12.70994 -12.27888 -12.24650 -12.13664 -11.31721 -11.09774 -11.01409 -10.58534 -10.12526 -9.83187 -8.94297 -8.16134 -6.33340 0.09313 0.21317 0.46594 1.46998 1.48928 1.56501 1.72682 1.81394 2.12110 2.43247 2.63865 2.76077 2.99106 3.14644 3.43079 3.61977 3.70611 4.04439 4.24562 4.42647 4.56099 4.76580 4.87855 4.95122 5.01708 5.11024 5.23558 5.33007 5.42701 5.50790 5.60798 5.67604 5.85366 5.94344 6.10959 6.25815 6.74400 7.23429 7.35402 7.67440 8.90054 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.044897 B = 0.002259 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.506004 B =12389.847384 C =12515.694108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.288 1.288 10 H -0.264 1.264 11 H -0.271 1.271 12 N -0.713 5.713 13 C 0.692 3.308 14 O -0.623 6.623 15 N -0.674 5.674 16 C 0.145 3.855 17 C -0.099 4.099 18 C -0.167 4.167 19 C 0.072 3.928 20 O -0.317 6.317 21 C 0.608 3.392 22 F -0.165 7.165 23 F -0.131 7.131 24 F -0.162 7.162 25 C -0.106 4.106 26 C -0.105 4.105 27 H 0.067 0.933 28 H 0.011 0.989 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.424 0.576 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -5.331 -23.134 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.186 3.814 3 H 0.019 0.981 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.214 1.214 10 H -0.189 1.189 11 H -0.196 1.196 12 N -0.365 5.365 13 C 0.393 3.607 14 O -0.504 6.504 15 N -0.323 5.323 16 C 0.049 3.951 17 C -0.119 4.119 18 C -0.186 4.186 19 C 0.029 3.971 20 O -0.238 6.238 21 C 0.517 3.483 22 F -0.147 7.147 23 F -0.112 7.112 24 F -0.144 7.144 25 C -0.125 4.125 26 C -0.125 4.125 27 H 0.085 0.915 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.240 0.760 32 H 0.263 0.737 33 H 0.185 0.815 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.300 -4.027 -22.992 23.735 hybrid contribution 0.231 -0.861 0.793 1.193 sum 4.532 -4.888 -22.200 23.179 Atomic orbital electron populations 1.21930 0.98465 0.99451 0.99544 1.18245 0.90831 0.91755 0.80618 0.98069 1.21507 1.32662 1.13672 0.90626 0.90667 1.25789 0.94890 0.95589 1.02295 1.70048 1.36897 1.23910 1.24696 0.85390 0.78618 0.78693 0.77576 1.21376 1.18854 1.19590 1.45440 1.68690 1.14033 1.08357 1.16251 0.78365 0.84997 0.81114 1.90858 1.58699 1.16128 1.84716 1.42458 1.67547 1.17054 1.05290 1.17780 0.99825 0.92433 0.85018 1.20911 0.99969 1.01991 0.89067 1.21458 1.04507 0.92298 1.00339 1.18701 1.03775 0.92040 0.82575 1.86401 1.86208 1.38100 1.13041 1.19258 0.74859 0.74954 0.79221 1.93307 1.39426 1.86096 1.95869 1.93309 1.96065 1.73237 1.48636 1.93303 1.66264 1.58953 1.95902 1.20381 1.02566 1.01365 0.88147 1.21193 0.99031 0.94496 0.97804 0.91455 0.96999 0.94086 0.92541 0.76007 0.73703 0.81468 0.82968 0.83224 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 2 C 0.29 14.54 2.56 44.24 0.11 14.66 16 3 H 0.00 0.08 7.58 -2.38 -0.02 0.07 16 4 C -0.55 -27.96 8.73 25.60 0.22 -27.74 16 5 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -51.74 11.32 21.45 0.24 -51.50 16 8 Si 0.97 40.95 29.54 68.60 2.03 42.98 16 9 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 12 N -0.71 -27.99 5.07 -461.42 -2.34 -30.33 16 13 C 0.69 26.56 8.37 179.06 1.50 28.06 16 14 O -0.62 -29.51 13.44 -4.02 -0.05 -29.56 16 15 N -0.67 -18.16 5.35 -317.06 -1.70 -19.85 16 16 C 0.15 3.83 6.30 38.09 0.24 4.07 16 17 C -0.10 -1.94 9.96 22.38 0.22 -1.72 16 18 C -0.17 -3.28 8.25 22.35 0.18 -3.10 16 19 C 0.07 1.62 6.48 22.50 0.15 1.77 16 20 O -0.32 -6.65 10.38 -93.32 -0.97 -7.62 16 21 C 0.61 10.46 3.42 113.37 0.39 10.84 16 22 F -0.16 -2.84 15.56 44.97 0.70 -2.14 16 23 F -0.13 -2.16 17.53 44.97 0.79 -1.37 16 24 F -0.16 -2.60 15.56 44.97 0.70 -1.91 16 25 C -0.11 -2.64 9.98 22.35 0.22 -2.42 16 26 C -0.10 -3.10 8.69 22.38 0.19 -2.90 16 27 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.40 12.84 8.56 -92.71 -0.79 12.04 16 32 H 0.42 7.84 8.84 -92.71 -0.82 7.02 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.15 2.39 5.09 -2.91 -0.01 2.37 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.13 4.61 6.22 -2.91 -0.02 4.59 16 Total: -1.00 -65.31 323.18 3.51 -61.80 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.44 Total: 22.80 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 4.55 Total: 16.70 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -3.79 Total: -101.67 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.02 Total: -37.18 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 2.19 Total: -5.42 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -65.31 3.51 -61.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156595583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.447 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds