Wall clock time and date at job start Tue Mar 31 2020 11:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47159 * 2 1 4 4 C 1.50700 * 109.46823 * 240.00516 * 2 1 3 5 5 H 1.08000 * 119.99719 * 239.99524 * 4 2 1 6 6 C 1.37875 * 120.00040 * 59.99992 * 4 2 1 7 7 N 1.31521 * 119.99889 * 179.72613 * 6 4 2 8 8 Si 1.86796 * 120.00169 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46861 * 269.72350 * 8 6 4 10 10 H 1.48493 * 109.46983 * 29.72695 * 8 6 4 11 11 H 1.48502 * 109.47000 * 149.72631 * 8 6 4 12 12 N 1.46496 * 109.47411 * 120.00513 * 2 1 3 13 13 C 1.34785 * 119.99799 * 274.99708 * 12 2 1 14 14 O 1.21595 * 119.99600 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99970 * 179.97438 * 13 12 2 16 16 C 1.40155 * 119.99825 * 174.68910 * 15 13 12 17 17 C 1.38834 * 120.01429 * 326.56106 * 16 15 13 18 18 C 1.38095 * 119.98616 * 179.79170 * 17 16 15 19 19 C 1.38718 * 120.01089 * 0.48890 * 18 17 16 20 20 O 1.35978 * 119.98802 * 179.72430 * 19 18 17 21 21 C 1.42904 * 116.99793 * 0.02562 * 20 19 18 22 22 F 1.39900 * 109.47542 * 59.99512 * 21 20 19 23 23 F 1.39896 * 109.47354 * 180.02562 * 21 20 19 24 24 F 1.39907 * 109.46569 * 299.99722 * 21 20 19 25 25 C 1.38715 * 120.02966 * 359.74265 * 19 18 17 26 26 C 1.38098 * 120.01374 * 0.02562 * 25 19 18 27 27 H 1.08993 * 109.47544 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46809 * 300.00053 * 1 2 3 29 29 H 1.09003 * 109.47277 * 59.99566 * 1 2 3 30 30 H 0.96997 * 120.00082 * 180.27478 * 7 6 4 31 31 H 0.96993 * 120.00462 * 94.99764 * 12 2 1 32 32 H 0.97003 * 120.00083 * 354.70007 * 15 13 12 33 33 H 1.07999 * 120.00679 * 0.02840 * 17 16 15 34 34 H 1.07995 * 119.99834 * 180.23430 * 18 17 16 35 35 H 1.08000 * 119.99396 * 179.97438 * 25 19 18 36 36 H 1.08005 * 120.00538 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4827 7 7 2.1419 -0.8559 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8018 0.8742 -2.7059 10 1 0.8443 2.1743 -1.4889 11 1 0.9817 1.9992 -3.9036 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8575 1.1613 2.4118 15 7 2.5960 -0.6538 3.4576 16 6 2.8359 0.0680 4.6348 17 6 3.2927 1.3772 4.5658 18 6 3.5248 2.0893 5.7259 19 6 3.3112 1.4934 6.9603 20 8 3.5452 2.1932 8.1024 21 6 4.0091 3.5369 7.9564 22 9 3.0624 4.2826 7.2459 23 9 4.1977 4.1052 9.2208 24 9 5.2223 3.5382 7.2595 25 6 2.8593 0.1838 7.0300 26 6 2.6223 -0.5278 5.8704 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.9108 -0.5222 -4.4376 31 1 2.2490 -1.6318 1.1525 32 1 2.7531 -1.6108 3.4349 33 1 3.4629 1.8399 3.6048 34 1 3.8766 3.1089 5.6724 35 1 2.6936 -0.2797 7.9913 36 1 2.2708 -1.5477 5.9249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156595719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:03 Heat of formation + Delta-G solvation = -186.047576 kcal Electronic energy + Delta-G solvation = -26155.690724 eV Core-core repulsion = 21611.754536 eV Total energy + Delta-G solvation = -4543.936189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.66573 -48.40524 -48.24568 -40.71162 -39.72187 -37.77381 -35.27577 -34.22700 -32.45055 -31.27457 -30.26365 -28.64924 -26.05610 -25.22921 -23.53734 -22.92424 -21.37295 -20.09914 -19.89818 -19.36868 -19.34726 -18.38909 -17.66494 -16.77382 -16.35829 -15.53174 -15.45492 -15.38886 -15.06769 -14.86056 -14.72284 -14.65905 -14.60784 -14.37190 -14.31304 -14.11942 -13.53556 -13.47889 -13.29756 -13.08125 -12.73602 -12.49422 -12.23504 -11.87384 -11.37425 -11.36167 -10.84924 -10.25791 -10.12701 -9.89021 -9.54849 -9.29079 -9.20677 -8.82188 -8.35517 -7.89235 -6.25737 -4.28951 1.01433 1.14970 1.27610 2.62640 2.91908 3.20561 3.29402 3.33114 3.37332 3.55238 3.69112 3.82484 4.27533 4.52687 4.53591 4.67722 4.86939 5.08818 5.09212 5.27724 5.54219 5.74122 6.05065 6.15194 6.19291 6.26146 6.32248 6.45410 6.50913 6.74512 6.91759 6.97083 7.20880 7.36704 7.46056 8.19541 8.50965 8.71951 8.95780 9.34634 10.86315 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.002682 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.947889 B =10437.067646 C =10999.413131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.253 3.747 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.294 1.294 12 N -0.709 5.709 13 C 0.694 3.306 14 O -0.583 6.583 15 N -0.693 5.693 16 C 0.170 3.830 17 C -0.082 4.082 18 C -0.165 4.165 19 C 0.071 3.929 20 O -0.312 6.312 21 C 0.603 3.397 22 F -0.164 7.164 23 F -0.135 7.135 24 F -0.166 7.166 25 C -0.101 4.101 26 C -0.121 4.121 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.406 0.594 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 2.484 23.450 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.150 3.850 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.186 1.186 11 H -0.221 1.221 12 N -0.361 5.361 13 C 0.394 3.606 14 O -0.461 6.461 15 N -0.341 5.341 16 C 0.073 3.927 17 C -0.102 4.102 18 C -0.184 4.184 19 C 0.028 3.972 20 O -0.232 6.232 21 C 0.512 3.488 22 F -0.146 7.146 23 F -0.117 7.117 24 F -0.148 7.148 25 C -0.120 4.120 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.242 0.758 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.940 3.522 23.306 23.753 hybrid contribution -0.352 0.149 -0.373 0.534 sum 2.588 3.671 22.933 23.369 Atomic orbital electron populations 1.22484 0.99336 1.00889 0.99420 1.19047 0.90000 0.94433 0.81554 0.93207 1.21011 1.33410 1.14593 0.88448 0.90162 1.24817 0.95480 0.96720 0.95468 1.69864 1.44725 1.40142 0.98085 0.86875 0.80508 0.83554 0.77560 1.20271 1.18580 1.22094 1.45484 1.68462 1.13735 1.08375 1.16126 0.78513 0.85491 0.80426 1.90901 1.56670 1.14328 1.84159 1.42829 1.70010 1.11546 1.09725 1.17562 0.97210 0.92547 0.85338 1.21106 0.96415 0.93552 0.99176 1.21393 1.04644 1.01115 0.91291 1.18605 1.03528 0.92255 0.82781 1.86381 1.81659 1.22197 1.32989 1.19360 0.75373 0.79687 0.74362 1.93318 1.65156 1.77623 1.78541 1.93292 1.94901 1.83373 1.40120 1.93306 1.46126 1.96100 1.79249 1.20078 1.01970 0.90603 0.99319 1.20690 1.02653 1.01047 0.89836 0.92813 0.94444 0.93363 0.92201 0.77291 0.75811 0.83298 0.84870 0.84273 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.25 5.84 2.15 -69.09 -0.15 5.69 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 4 C -0.54 -14.08 9.31 -34.44 -0.32 -14.40 16 5 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 8 Si 0.89 21.36 24.37 -169.99 -4.14 17.22 16 9 H -0.28 -6.45 6.88 56.52 0.39 -6.06 16 10 H -0.26 -6.26 6.52 56.52 0.37 -5.89 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.71 -13.27 5.07 -59.81 -0.30 -13.58 16 13 C 0.69 12.51 8.27 -86.91 -0.72 11.79 16 14 O -0.58 -12.63 13.70 5.28 0.07 -12.55 16 15 N -0.69 -9.16 5.36 -14.18 -0.08 -9.23 16 16 C 0.17 2.21 6.28 -83.61 -0.53 1.69 16 17 C -0.08 -1.18 8.65 -39.41 -0.34 -1.52 16 18 C -0.17 -2.10 8.25 -39.46 -0.33 -2.43 16 19 C 0.07 0.82 6.48 -39.23 -0.25 0.57 16 20 O -0.31 -3.40 10.38 -19.67 -0.20 -3.60 16 21 C 0.60 6.09 3.42 101.05 0.35 6.44 16 22 F -0.16 -1.77 15.56 2.25 0.04 -1.74 16 23 F -0.14 -1.26 17.53 2.25 0.04 -1.22 16 24 F -0.17 -1.70 15.56 2.25 0.04 -1.66 16 25 C -0.10 -0.99 9.98 -39.46 -0.39 -1.39 16 26 C -0.12 -1.21 9.96 -39.41 -0.39 -1.60 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.05 1.09 3.28 -51.93 -0.17 0.92 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.39 6.29 8.56 -40.82 -0.35 5.94 16 32 H 0.41 3.88 8.83 -40.82 -0.36 3.52 16 33 H 0.15 2.46 6.42 -52.49 -0.34 2.12 16 34 H 0.13 1.59 5.09 -52.49 -0.27 1.33 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -31.01 316.65 -4.96 -35.97 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.12 Total: 7.10 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.84 Total: 3.69 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.39 Total: -47.97 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.13 Total: -16.15 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.11 Total: -4.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.01 -4.96 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156595719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.080 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds