Wall clock time and date at job start Tue Mar 31 2020 11:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47159 * 2 1 4 4 C 1.50700 * 109.46823 * 240.00516 * 2 1 3 5 5 H 1.08000 * 119.99719 * 239.99524 * 4 2 1 6 6 C 1.37875 * 120.00040 * 59.99992 * 4 2 1 7 7 N 1.31521 * 119.99889 * 179.72613 * 6 4 2 8 8 Si 1.86796 * 120.00169 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46861 * 269.72350 * 8 6 4 10 10 H 1.48493 * 109.46983 * 29.72695 * 8 6 4 11 11 H 1.48502 * 109.47000 * 149.72631 * 8 6 4 12 12 N 1.46496 * 109.47411 * 120.00513 * 2 1 3 13 13 C 1.34785 * 119.99799 * 274.99708 * 12 2 1 14 14 O 1.21595 * 119.99600 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99970 * 179.97438 * 13 12 2 16 16 C 1.40155 * 119.99825 * 174.68910 * 15 13 12 17 17 C 1.38834 * 120.01429 * 326.56106 * 16 15 13 18 18 C 1.38095 * 119.98616 * 179.79170 * 17 16 15 19 19 C 1.38718 * 120.01089 * 0.48890 * 18 17 16 20 20 O 1.35978 * 119.98802 * 179.72430 * 19 18 17 21 21 C 1.42904 * 116.99793 * 0.02562 * 20 19 18 22 22 F 1.39900 * 109.47542 * 59.99512 * 21 20 19 23 23 F 1.39896 * 109.47354 * 180.02562 * 21 20 19 24 24 F 1.39907 * 109.46569 * 299.99722 * 21 20 19 25 25 C 1.38715 * 120.02966 * 359.74265 * 19 18 17 26 26 C 1.38098 * 120.01374 * 0.02562 * 25 19 18 27 27 H 1.08993 * 109.47544 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46809 * 300.00053 * 1 2 3 29 29 H 1.09003 * 109.47277 * 59.99566 * 1 2 3 30 30 H 0.96997 * 120.00082 * 180.27478 * 7 6 4 31 31 H 0.96993 * 120.00462 * 94.99764 * 12 2 1 32 32 H 0.97003 * 120.00083 * 354.70007 * 15 13 12 33 33 H 1.07999 * 120.00679 * 0.02840 * 17 16 15 34 34 H 1.07995 * 119.99834 * 180.23430 * 18 17 16 35 35 H 1.08000 * 119.99396 * 179.97438 * 25 19 18 36 36 H 1.08005 * 120.00538 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4827 7 7 2.1419 -0.8559 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8018 0.8742 -2.7059 10 1 0.8443 2.1743 -1.4889 11 1 0.9817 1.9992 -3.9036 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8575 1.1613 2.4118 15 7 2.5960 -0.6538 3.4576 16 6 2.8359 0.0680 4.6348 17 6 3.2927 1.3772 4.5658 18 6 3.5248 2.0893 5.7259 19 6 3.3112 1.4934 6.9603 20 8 3.5452 2.1932 8.1024 21 6 4.0091 3.5369 7.9564 22 9 3.0624 4.2826 7.2459 23 9 4.1977 4.1052 9.2208 24 9 5.2223 3.5382 7.2595 25 6 2.8593 0.1838 7.0300 26 6 2.6223 -0.5278 5.8704 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.9108 -0.5222 -4.4376 31 1 2.2490 -1.6318 1.1525 32 1 2.7531 -1.6108 3.4349 33 1 3.4629 1.8399 3.6048 34 1 3.8766 3.1089 5.6724 35 1 2.6936 -0.2797 7.9913 36 1 2.2708 -1.5477 5.9249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156595719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:02 Heat of formation + Delta-G solvation = -208.294403 kcal Electronic energy + Delta-G solvation = -26156.655419 eV Core-core repulsion = 21611.754536 eV Total energy + Delta-G solvation = -4544.900884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.48296 -49.19922 -49.08278 -41.80716 -40.85676 -38.84942 -36.91718 -35.49181 -34.38390 -32.18701 -31.86209 -29.77894 -27.22776 -26.91362 -24.62763 -23.95291 -22.78484 -21.62285 -20.77687 -20.32419 -20.19253 -19.77130 -18.78799 -18.23021 -17.69495 -17.16165 -16.56144 -16.27232 -16.14188 -15.96691 -15.75847 -15.58990 -15.53182 -15.47481 -15.19925 -15.11706 -15.08428 -14.86545 -14.36331 -14.29884 -14.12829 -13.91053 -13.62484 -13.39582 -13.17348 -12.77259 -12.28825 -12.14245 -11.64167 -11.36273 -11.26600 -11.08190 -10.86936 -10.12712 -9.96020 -8.94161 -8.37930 -6.43797 0.07628 0.23569 0.44173 1.28576 1.37279 1.46237 1.65628 1.81411 2.05473 2.26726 2.63535 2.74132 2.95761 2.98849 3.30666 3.62741 3.69387 4.03811 4.23034 4.35825 4.46036 4.55325 4.62941 4.71377 4.88854 4.98842 5.09963 5.19333 5.28546 5.32607 5.42485 5.48909 5.61557 5.92802 5.96870 6.27610 6.59003 7.11207 7.22927 7.57171 8.77192 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.002682 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.947889 B =10437.067646 C =10999.413131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.260 3.740 3 H 0.023 0.977 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.937 3.063 9 H -0.259 1.259 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.708 5.708 13 C 0.695 3.305 14 O -0.621 6.621 15 N -0.672 5.672 16 C 0.147 3.853 17 C -0.106 4.106 18 C -0.175 4.175 19 C 0.067 3.933 20 O -0.309 6.309 21 C 0.606 3.394 22 F -0.169 7.169 23 F -0.129 7.129 24 F -0.167 7.167 25 C -0.091 4.091 26 C -0.099 4.099 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.270 0.730 31 H 0.408 0.592 32 H 0.426 0.574 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.175 0.825 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 1.564 25.970 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.155 3.845 3 H 0.041 0.959 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.765 3.235 9 H -0.185 1.185 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.361 5.361 13 C 0.396 3.604 14 O -0.502 6.502 15 N -0.322 5.322 16 C 0.051 3.949 17 C -0.127 4.127 18 C -0.194 4.194 19 C 0.025 3.975 20 O -0.230 6.230 21 C 0.515 3.485 22 F -0.152 7.152 23 F -0.110 7.110 24 F -0.149 7.149 25 C -0.110 4.110 26 C -0.120 4.120 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.265 0.735 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.192 0.808 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.087 2.555 25.884 26.094 hybrid contribution 0.017 0.415 -1.008 1.090 sum 2.105 2.969 24.876 25.141 Atomic orbital electron populations 1.22370 0.97893 1.01786 0.99396 1.18653 0.91002 0.92890 0.81948 0.95880 1.21234 1.32326 1.13707 0.89750 0.92243 1.25518 0.96837 0.99238 0.95361 1.69968 1.46606 1.41963 0.98673 0.86034 0.79853 0.80451 0.77205 1.18498 1.18712 1.22110 1.45128 1.68938 1.14270 1.07719 1.16174 0.78262 0.84933 0.81043 1.90883 1.58246 1.16177 1.84896 1.42457 1.68858 1.12362 1.08510 1.17784 0.98584 0.92350 0.86134 1.20935 0.98533 0.94796 0.98396 1.21363 1.05283 1.01195 0.91574 1.18827 1.03262 0.93055 0.82372 1.86384 1.81616 1.22368 1.32594 1.19312 0.75183 0.79508 0.74496 1.93311 1.65377 1.77725 1.78738 1.93309 1.94843 1.83235 1.39621 1.93305 1.46172 1.96088 1.79354 1.20542 1.00015 0.89618 1.00804 1.21058 1.00381 1.02398 0.88132 0.91435 0.93636 0.94122 0.92031 0.75672 0.73480 0.86479 0.85074 0.80782 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.60 8.96 71.98 0.64 -5.95 16 2 C 0.26 11.96 2.15 44.24 0.10 12.06 16 3 H 0.02 1.20 6.63 -2.39 -0.02 1.19 16 4 C -0.53 -28.15 9.31 25.60 0.24 -27.91 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 6 C 0.03 1.68 5.45 84.65 0.46 2.14 16 7 N -0.93 -55.04 13.96 21.45 0.30 -54.74 16 8 Si 0.94 44.04 24.37 68.60 1.67 45.71 16 9 H -0.26 -11.43 6.88 99.48 0.68 -10.74 16 10 H -0.26 -12.30 6.52 99.48 0.65 -11.65 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 N -0.71 -26.08 5.07 -461.41 -2.34 -28.42 16 13 C 0.70 24.71 8.27 179.05 1.48 26.19 16 14 O -0.62 -27.27 13.70 -4.01 -0.06 -27.33 16 15 N -0.67 -16.63 5.36 -317.05 -1.70 -18.33 16 16 C 0.15 3.57 6.28 38.09 0.24 3.81 16 17 C -0.11 -3.07 8.65 22.38 0.19 -2.87 16 18 C -0.17 -4.40 8.25 22.35 0.18 -4.21 16 19 C 0.07 1.42 6.48 22.50 0.15 1.56 16 20 O -0.31 -6.08 10.38 -93.30 -0.97 -7.05 16 21 C 0.61 11.54 3.42 113.37 0.39 11.93 16 22 F -0.17 -3.56 15.56 44.97 0.70 -2.86 16 23 F -0.13 -2.21 17.53 44.97 0.79 -1.42 16 24 F -0.17 -3.31 15.56 44.97 0.70 -2.61 16 25 C -0.09 -1.44 9.98 22.35 0.22 -1.21 16 26 C -0.10 -1.59 9.96 22.38 0.22 -1.37 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.04 1.77 3.28 -2.39 -0.01 1.76 16 30 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.41 12.59 8.56 -92.71 -0.79 11.80 16 32 H 0.43 6.98 8.83 -92.71 -0.82 6.16 16 33 H 0.12 4.12 6.42 -2.91 -0.02 4.10 16 34 H 0.13 3.21 5.09 -2.91 -0.01 3.20 16 35 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -68.21 316.65 3.10 -65.11 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.51 Total: 17.78 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 4.52 Total: 14.16 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.74 Total: -101.49 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.02 Total: -34.38 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 2.19 Total: -6.89 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.67 Total: 45.71 kcal Total: -68.21 3.10 -65.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156595719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.186 kcal (2) G-P(sol) polarization free energy of solvation -68.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds