Wall clock time and date at job start Tue Mar 31 2020 11:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47582 * 2 1 4 4 C 1.50704 * 109.47320 * 119.99968 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00106 * 4 2 1 6 6 C 1.37869 * 119.99921 * 300.27547 * 4 2 1 7 7 N 1.31521 * 120.00040 * 359.71748 * 6 4 2 8 8 Si 1.86800 * 120.00257 * 179.72517 * 6 4 2 9 9 H 1.48499 * 109.46919 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47323 * 119.99661 * 8 6 4 11 11 H 1.48497 * 109.47242 * 240.00111 * 8 6 4 12 12 N 1.46497 * 109.47023 * 239.99869 * 2 1 3 13 13 C 1.34776 * 120.00313 * 84.99673 * 12 2 1 14 14 O 1.21593 * 119.99462 * 0.02562 * 13 12 2 15 15 N 1.34767 * 120.00560 * 180.02562 * 13 12 2 16 16 C 1.40148 * 120.00574 * 175.38541 * 15 13 12 17 17 C 1.38839 * 120.00336 * 35.08934 * 16 15 13 18 18 C 1.38130 * 120.02320 * 179.97438 * 17 16 15 19 19 C 1.38646 * 120.04218 * 0.02562 * 18 17 16 20 20 O 1.36031 * 119.99735 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99888 * 0.02562 * 20 19 18 22 22 F 1.39908 * 109.47156 * 300.00052 * 21 20 19 23 23 F 1.39898 * 109.47374 * 59.99878 * 21 20 19 24 24 C 1.38907 * 120.00705 * 359.97438 * 19 18 17 25 25 F 1.35105 * 120.00725 * 180.02562 * 24 19 18 26 26 C 1.38280 * 119.97776 * 359.78893 * 24 19 18 27 27 H 1.09000 * 109.47642 * 59.99850 * 1 2 3 28 28 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46802 * 300.00075 * 1 2 3 30 30 H 0.96997 * 119.99983 * 179.97438 * 7 6 4 31 31 H 0.97004 * 120.00355 * 265.00331 * 12 2 1 32 32 H 0.97002 * 120.00079 * 355.37962 * 15 13 12 33 33 H 1.07997 * 119.99015 * 0.02562 * 17 16 15 34 34 H 1.08005 * 119.98358 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.47119 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.01556 * 180.25594 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6946 -0.2427 2.4827 7 7 0.9386 0.8267 2.6034 8 14 2.3109 -1.1277 4.0079 9 1 3.1365 -2.2940 3.6037 10 1 3.1332 -0.1969 4.8220 11 1 1.1527 -1.5961 4.8104 12 7 2.0182 -0.6906 -1.1961 13 6 2.1469 -0.0184 -2.3572 14 8 1.8581 1.1615 -2.4116 15 7 2.5956 -0.6538 -3.4577 16 6 2.6380 0.0184 -4.6867 17 6 2.9405 1.3728 -4.7273 18 6 2.9830 2.0355 -5.9384 19 6 2.7230 1.3492 -7.1147 20 8 2.7645 2.0029 -8.3069 21 6 3.0829 3.3955 -8.2724 22 9 2.1292 4.0732 -7.5051 23 9 4.3490 3.5705 -7.7035 24 6 2.4202 -0.0059 -7.0759 25 9 2.1674 -0.6748 -8.2222 26 6 2.3824 -0.6710 -5.8642 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7007 1.1556 3.4843 31 1 2.2489 -1.6318 -1.1526 32 1 2.8893 -1.5764 -3.3992 33 1 3.1436 1.9082 -3.8116 34 1 3.2188 3.0891 -5.9692 35 1 3.0829 3.7935 -9.2872 36 1 2.1510 -1.7255 -5.8337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156784270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:43 Heat of formation + Delta-G solvation = -187.312452 kcal Electronic energy + Delta-G solvation = -26153.333707 eV Core-core repulsion = 21609.342669 eV Total energy + Delta-G solvation = -4543.991038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.61129 -48.95373 -47.59774 -40.46819 -39.41234 -37.57493 -35.03229 -34.10262 -32.43799 -30.80624 -29.69083 -28.31034 -26.13940 -25.29686 -23.39535 -22.95096 -21.26005 -19.97894 -19.33620 -18.85495 -18.31693 -18.18158 -17.57898 -16.60815 -16.24520 -15.92434 -15.82133 -15.52121 -15.05640 -14.66917 -14.58473 -14.29553 -14.12377 -14.04283 -13.84862 -13.69592 -13.34934 -13.07251 -12.91920 -12.46438 -12.30920 -12.22178 -11.73239 -11.39304 -11.13370 -11.03132 -10.79576 -10.36403 -10.28338 -9.97720 -9.52472 -9.09714 -8.99393 -8.62102 -8.16131 -7.78496 -6.17409 -4.26953 0.99507 1.05903 2.23269 2.95706 3.18226 3.20804 3.29064 3.31433 3.32752 3.80443 3.99160 4.06363 4.28052 4.34586 4.60283 4.75549 4.89095 5.06351 5.15434 5.20151 5.43944 5.77655 6.00058 6.20532 6.27000 6.57300 6.73362 6.92359 6.97404 7.03590 7.14546 7.37157 7.56901 7.75724 7.91790 8.09835 8.64484 8.76502 9.11950 9.41142 10.88626 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024862 B = 0.002667 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.937927 B =10494.352512 C =11074.049591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.716 5.716 13 C 0.693 3.307 14 O -0.580 6.580 15 N -0.694 5.694 16 C 0.191 3.809 17 C -0.092 4.092 18 C -0.141 4.141 19 C 0.043 3.957 20 O -0.317 6.317 21 C 0.412 3.588 22 F -0.196 7.196 23 F -0.198 7.198 24 C 0.106 3.894 25 F -0.131 7.131 26 C -0.161 4.161 27 H 0.016 0.984 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.406 0.594 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.182 0.818 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 0.037 -21.010 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.366 5.366 13 C 0.393 3.607 14 O -0.457 6.457 15 N -0.342 5.342 16 C 0.094 3.906 17 C -0.113 4.113 18 C -0.160 4.160 19 C -0.002 4.002 20 O -0.235 6.235 21 C 0.322 3.678 22 F -0.178 7.178 23 F -0.180 7.180 24 C 0.086 3.914 25 F -0.109 7.109 26 C -0.183 4.183 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.241 0.759 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.198 0.802 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.429 1.151 -20.930 21.424 hybrid contribution 0.473 -1.268 0.927 1.640 sum 4.903 -0.117 -20.002 20.595 Atomic orbital electron populations 1.22111 0.98437 0.99176 1.01041 1.18723 0.90927 0.93789 0.78753 0.93153 1.21234 1.32495 1.13400 0.90197 0.91976 1.24883 0.94769 0.94970 0.99075 1.69913 1.35712 1.22442 1.23887 0.86370 0.78585 0.79506 0.82482 1.19748 1.20837 1.20853 1.45889 1.68241 1.13392 1.09116 1.16149 0.78644 0.85521 0.80373 1.90882 1.56969 1.14033 1.83865 1.42848 1.68528 1.16512 1.06296 1.17191 0.97164 0.92017 0.84241 1.21367 0.97585 0.93594 0.98708 1.21348 1.02897 1.00949 0.90845 1.18710 1.05486 0.91089 0.84896 1.86635 1.85688 1.21810 1.29343 1.23361 0.72115 0.78639 0.93724 1.93125 1.65061 1.80294 1.79334 1.93105 1.42261 1.94834 1.87809 1.16401 1.05861 0.86846 0.82332 1.91501 1.91963 1.79978 1.47501 1.20617 1.06495 1.01612 0.89542 0.96533 0.95467 0.89008 0.92541 0.78025 0.75894 0.82397 0.83877 0.80173 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.15 0.34 -3.30 16 2 C 0.28 6.90 2.56 -69.09 -0.18 6.72 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.38 11.31 55.43 0.63 -23.75 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.72 -14.15 5.07 -59.82 -0.30 -14.45 16 13 C 0.69 13.29 8.37 -86.93 -0.73 12.57 16 14 O -0.58 -13.32 13.44 5.28 0.07 -13.24 16 15 N -0.69 -9.88 5.35 -14.19 -0.08 -9.96 16 16 C 0.19 2.72 6.30 -83.62 -0.53 2.19 16 17 C -0.09 -1.40 8.69 -39.40 -0.34 -1.75 16 18 C -0.14 -1.92 8.25 -39.47 -0.33 -2.25 16 19 C 0.04 0.56 6.49 -39.18 -0.25 0.31 16 20 O -0.32 -3.57 10.30 -19.84 -0.20 -3.77 16 21 C 0.41 3.33 5.98 101.05 0.60 3.94 16 22 F -0.20 -2.02 15.58 2.25 0.04 -1.98 16 23 F -0.20 -1.90 15.58 2.25 0.04 -1.87 16 24 C 0.11 1.38 7.31 -39.32 -0.29 1.09 16 25 F -0.13 -1.70 17.11 2.25 0.04 -1.66 16 26 C -0.16 -1.95 9.94 -39.35 -0.39 -2.34 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 6.44 8.56 -40.82 -0.35 6.09 16 32 H 0.41 4.26 8.84 -40.82 -0.36 3.90 16 33 H 0.16 2.73 6.22 -52.49 -0.33 2.41 16 34 H 0.14 1.82 5.09 -52.48 -0.27 1.55 16 35 H 0.18 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -31.59 322.64 -5.66 -37.25 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -3.24 Total: 8.61 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.48 Total: 4.78 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.25 Total: -48.16 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.13 Total: -17.02 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.59 -5.66 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156784270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.060 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds