Wall clock time and date at job start Tue Mar 31 2020 11:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47582 * 2 1 4 4 C 1.50704 * 109.47320 * 119.99968 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00106 * 4 2 1 6 6 C 1.37869 * 119.99921 * 300.27547 * 4 2 1 7 7 N 1.31521 * 120.00040 * 359.71748 * 6 4 2 8 8 Si 1.86800 * 120.00257 * 179.72517 * 6 4 2 9 9 H 1.48499 * 109.46919 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47323 * 119.99661 * 8 6 4 11 11 H 1.48497 * 109.47242 * 240.00111 * 8 6 4 12 12 N 1.46497 * 109.47023 * 239.99869 * 2 1 3 13 13 C 1.34776 * 120.00313 * 84.99673 * 12 2 1 14 14 O 1.21593 * 119.99462 * 0.02562 * 13 12 2 15 15 N 1.34767 * 120.00560 * 180.02562 * 13 12 2 16 16 C 1.40148 * 120.00574 * 175.38541 * 15 13 12 17 17 C 1.38839 * 120.00336 * 35.08934 * 16 15 13 18 18 C 1.38130 * 120.02320 * 179.97438 * 17 16 15 19 19 C 1.38646 * 120.04218 * 0.02562 * 18 17 16 20 20 O 1.36031 * 119.99735 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99888 * 0.02562 * 20 19 18 22 22 F 1.39908 * 109.47156 * 300.00052 * 21 20 19 23 23 F 1.39898 * 109.47374 * 59.99878 * 21 20 19 24 24 C 1.38907 * 120.00705 * 359.97438 * 19 18 17 25 25 F 1.35105 * 120.00725 * 180.02562 * 24 19 18 26 26 C 1.38280 * 119.97776 * 359.78893 * 24 19 18 27 27 H 1.09000 * 109.47642 * 59.99850 * 1 2 3 28 28 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46802 * 300.00075 * 1 2 3 30 30 H 0.96997 * 119.99983 * 179.97438 * 7 6 4 31 31 H 0.97004 * 120.00355 * 265.00331 * 12 2 1 32 32 H 0.97002 * 120.00079 * 355.37962 * 15 13 12 33 33 H 1.07997 * 119.99015 * 0.02562 * 17 16 15 34 34 H 1.08005 * 119.98358 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.47119 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.01556 * 180.25594 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6946 -0.2427 2.4827 7 7 0.9386 0.8267 2.6034 8 14 2.3109 -1.1277 4.0079 9 1 3.1365 -2.2940 3.6037 10 1 3.1332 -0.1969 4.8220 11 1 1.1527 -1.5961 4.8104 12 7 2.0182 -0.6906 -1.1961 13 6 2.1469 -0.0184 -2.3572 14 8 1.8581 1.1615 -2.4116 15 7 2.5956 -0.6538 -3.4577 16 6 2.6380 0.0184 -4.6867 17 6 2.9405 1.3728 -4.7273 18 6 2.9830 2.0355 -5.9384 19 6 2.7230 1.3492 -7.1147 20 8 2.7645 2.0029 -8.3069 21 6 3.0829 3.3955 -8.2724 22 9 2.1292 4.0732 -7.5051 23 9 4.3490 3.5705 -7.7035 24 6 2.4202 -0.0059 -7.0759 25 9 2.1674 -0.6748 -8.2222 26 6 2.3824 -0.6710 -5.8642 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7007 1.1556 3.4843 31 1 2.2489 -1.6318 -1.1526 32 1 2.8893 -1.5764 -3.3992 33 1 3.1436 1.9082 -3.8116 34 1 3.2188 3.0891 -5.9692 35 1 3.0829 3.7935 -9.2872 36 1 2.1510 -1.7255 -5.8337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156784270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:42 Heat of formation + Delta-G solvation = -209.031515 kcal Electronic energy + Delta-G solvation = -26154.275516 eV Core-core repulsion = 21609.342669 eV Total energy + Delta-G solvation = -4544.932847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.33564 -49.96962 -48.33413 -41.73964 -40.56823 -38.73540 -36.77953 -35.47910 -34.28581 -31.88073 -31.21536 -29.70650 -27.33743 -26.95150 -24.55338 -24.11307 -22.78320 -21.62535 -20.23202 -20.03631 -19.62669 -18.92289 -18.58085 -18.09004 -17.47416 -17.12517 -16.89649 -16.80009 -16.58694 -16.17093 -15.90377 -15.40188 -15.11294 -15.03037 -14.85929 -14.70406 -14.63717 -14.36790 -14.04318 -13.95085 -13.77418 -13.30406 -13.18285 -12.97891 -12.85064 -12.71275 -12.34668 -12.26655 -12.10424 -11.33241 -11.08780 -11.03801 -10.60628 -10.07256 -9.83792 -8.98743 -8.16959 -6.34036 -0.06015 -0.03565 1.44372 1.46088 1.47644 1.58207 1.66125 2.03475 2.41807 2.49922 2.52921 3.00499 3.14154 3.37044 3.45069 3.62470 3.66295 3.86537 3.99031 4.24786 4.31227 4.69057 4.76111 4.93580 4.97225 5.06298 5.10367 5.18345 5.40117 5.47638 5.60044 5.65335 5.83675 5.87279 6.10036 6.21684 6.74043 7.19630 7.34598 7.63602 8.89651 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024862 B = 0.002667 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.937927 B =10494.352512 C =11074.049591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.288 3.712 3 H 0.002 0.998 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.711 5.711 13 C 0.693 3.307 14 O -0.622 6.622 15 N -0.671 5.671 16 C 0.172 3.828 17 C -0.108 4.108 18 C -0.146 4.146 19 C 0.047 3.953 20 O -0.322 6.322 21 C 0.404 3.596 22 F -0.211 7.211 23 F -0.208 7.208 24 C 0.099 3.901 25 F -0.128 7.128 26 C -0.137 4.137 27 H 0.011 0.989 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.427 0.573 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.242 0.758 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -1.908 -22.439 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.020 0.980 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.363 5.363 13 C 0.394 3.606 14 O -0.503 6.503 15 N -0.321 5.321 16 C 0.076 3.924 17 C -0.129 4.129 18 C -0.165 4.165 19 C 0.002 3.998 20 O -0.240 6.240 21 C 0.316 3.684 22 F -0.193 7.193 23 F -0.190 7.190 24 C 0.079 3.921 25 F -0.106 7.106 26 C -0.158 4.158 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.266 0.734 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.257 0.743 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.067 -0.854 -22.419 23.000 hybrid contribution 0.307 -0.580 1.214 1.380 sum 5.374 -1.434 -21.204 21.922 Atomic orbital electron populations 1.21932 0.98420 0.99514 0.99572 1.18274 0.90869 0.91803 0.80591 0.98002 1.21565 1.32466 1.13686 0.90577 0.90603 1.25783 0.94879 0.95604 1.02300 1.70061 1.36950 1.23987 1.24572 0.85283 0.78031 0.78516 0.78404 1.18253 1.21121 1.20569 1.45435 1.68549 1.14071 1.08235 1.16216 0.78349 0.84975 0.81076 1.90868 1.58614 1.16109 1.84675 1.42397 1.67531 1.17172 1.04989 1.17247 0.98741 0.91816 0.84632 1.21227 0.98933 0.94448 0.98295 1.21314 1.03355 1.01167 0.90671 1.18821 1.04180 0.91483 0.85314 1.86654 1.85501 1.23509 1.28304 1.24393 0.71052 0.77182 0.95795 1.93097 1.65686 1.80415 1.80086 1.93084 1.42947 1.94726 1.88250 1.16518 1.06011 0.86935 0.82679 1.91511 1.91939 1.79850 1.47344 1.20796 1.04059 1.02863 0.88117 0.96997 0.94015 0.91425 0.92552 0.75900 0.73416 0.85172 0.83604 0.74287 0.80232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.29 14.51 2.56 44.24 0.11 14.62 16 3 H 0.00 0.12 7.58 -2.39 -0.02 0.11 16 4 C -0.54 -27.90 8.73 25.60 0.22 -27.67 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -51.78 11.31 21.45 0.24 -51.53 16 8 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 9 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.71 -27.92 5.07 -461.42 -2.34 -30.26 16 13 C 0.69 26.76 8.37 179.06 1.50 28.26 16 14 O -0.62 -29.71 13.44 -4.01 -0.05 -29.77 16 15 N -0.67 -18.33 5.35 -317.08 -1.70 -20.03 16 16 C 0.17 4.73 6.30 38.09 0.24 4.97 16 17 C -0.11 -3.38 8.69 22.39 0.19 -3.19 16 18 C -0.15 -3.99 8.25 22.34 0.18 -3.80 16 19 C 0.05 1.18 6.49 22.53 0.15 1.32 16 20 O -0.32 -6.63 10.30 -93.90 -0.97 -7.60 16 21 C 0.40 5.75 5.98 113.37 0.68 6.43 16 22 F -0.21 -4.14 15.58 44.97 0.70 -3.44 16 23 F -0.21 -3.75 15.58 44.97 0.70 -3.05 16 24 C 0.10 2.36 7.31 22.44 0.16 2.53 16 25 F -0.13 -2.98 17.11 44.97 0.77 -2.22 16 26 C -0.14 -2.99 9.94 22.42 0.22 -2.77 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 3.70 6.06 -2.38 -0.01 3.69 16 30 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.41 12.84 8.56 -92.71 -0.79 12.05 16 32 H 0.43 7.92 8.84 -92.71 -0.82 7.10 16 33 H 0.13 4.82 6.22 -2.91 -0.02 4.80 16 34 H 0.15 3.80 5.09 -2.91 -0.01 3.78 16 35 H 0.24 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -70.59 322.64 3.73 -66.86 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.43 Total: 22.12 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 4.78 Total: 15.83 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.79 Total: -101.82 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.02 Total: -37.36 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 2.17 Total: -8.71 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -70.59 3.73 -66.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156784270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.174 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds