Wall clock time and date at job start Tue Mar 31 2020 11:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 C 1.50700 * 109.46776 * 239.99980 * 2 1 3 5 5 H 1.08004 * 120.00117 * 274.94182 * 4 2 1 6 6 C 1.37876 * 120.00142 * 94.94313 * 4 2 1 7 7 N 1.31515 * 120.00086 * 184.89193 * 6 4 2 8 8 Si 1.86799 * 119.99918 * 4.89224 * 6 4 2 9 9 H 1.48495 * 109.47470 * 94.87855 * 8 6 4 10 10 H 1.48503 * 109.47041 * 214.87937 * 8 6 4 11 11 H 1.48504 * 109.47086 * 334.87977 * 8 6 4 12 12 N 1.46499 * 109.46778 * 120.00225 * 2 1 3 13 13 C 1.34779 * 119.99721 * 274.99150 * 12 2 1 14 14 O 1.21588 * 120.00351 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99869 * 180.02562 * 13 12 2 16 16 C 1.40146 * 120.00305 * 184.58150 * 15 13 12 17 17 C 1.38836 * 120.00867 * 144.92218 * 16 15 13 18 18 C 1.38127 * 120.02555 * 179.97438 * 17 16 15 19 19 C 1.38645 * 120.03691 * 0.02562 * 18 17 16 20 20 O 1.36030 * 119.99381 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00196 * 359.97438 * 20 19 18 22 22 F 1.39901 * 109.47010 * 300.00399 * 21 20 19 23 23 F 1.39904 * 109.47037 * 59.99934 * 21 20 19 24 24 C 1.38893 * 120.01622 * 359.97438 * 19 18 17 25 25 F 1.35102 * 120.01738 * 180.02562 * 24 19 18 26 26 C 1.38285 * 119.97204 * 359.78947 * 24 19 18 27 27 H 1.09004 * 109.46796 * 295.01206 * 1 2 3 28 28 H 1.08999 * 109.47094 * 55.01210 * 1 2 3 29 29 H 1.08998 * 109.47135 * 175.01201 * 1 2 3 30 30 H 0.97006 * 120.00127 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00558 * 95.00175 * 12 2 1 32 32 H 0.97003 * 120.00168 * 4.58293 * 15 13 12 33 33 H 1.08004 * 119.98636 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.98444 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.47611 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.01841 * 180.25437 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1363 -1.7854 -1.2288 6 6 2.3591 0.0119 -2.3585 7 7 2.7051 -0.6134 -3.4625 8 14 2.3103 1.8789 -2.3187 9 1 3.6667 2.4033 -2.0185 10 1 1.8627 2.3906 -3.6390 11 1 1.3625 2.3269 -1.2669 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8577 1.1614 2.4118 15 7 2.5968 -0.6535 3.4574 16 6 2.6400 0.0189 4.6863 17 6 2.3808 -0.6693 5.8639 18 6 2.4238 -0.0071 7.0753 19 6 2.7255 1.3455 7.1165 20 8 2.7671 1.9969 8.3099 21 6 2.4891 1.2254 9.4802 22 9 1.2003 0.6887 9.3896 23 9 3.4204 0.1868 9.5862 24 6 2.9851 2.0356 5.9394 25 9 3.2796 3.3535 5.9795 26 6 2.9470 1.3721 4.7268 27 1 -0.3633 0.4345 0.9313 28 1 -0.3633 0.5893 -0.8419 29 1 -0.3633 -1.0238 -0.0894 30 1 2.9347 -0.1052 -4.2562 31 1 2.2490 -1.6318 1.1527 32 1 2.8905 -1.5761 3.3989 33 1 2.1453 -1.7229 5.8327 34 1 2.2224 -0.5432 7.9910 35 1 2.5561 1.8641 10.3609 36 1 3.1528 1.9071 3.8114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156784408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:44 Heat of formation + Delta-G solvation = -210.351541 kcal Electronic energy + Delta-G solvation = -26242.968175 eV Core-core repulsion = 21697.978087 eV Total energy + Delta-G solvation = -4544.990088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.31274 -49.99548 -48.29778 -41.75278 -40.60041 -38.75757 -36.79764 -35.47291 -34.37427 -31.91559 -31.71354 -29.84821 -27.33096 -26.99954 -24.50211 -23.99768 -22.69777 -21.64485 -20.28450 -20.17391 -19.47038 -18.94616 -18.90213 -18.24097 -17.52072 -17.28825 -16.93573 -16.81513 -16.50623 -16.18500 -15.83224 -15.39070 -15.14286 -15.02612 -14.83797 -14.72682 -14.60906 -14.55173 -14.34133 -14.07002 -13.85106 -13.46644 -13.13635 -13.04799 -13.01388 -12.77813 -12.51141 -12.40587 -11.85326 -11.33083 -11.19326 -11.09079 -10.83128 -10.05638 -9.89448 -8.99752 -8.39377 -6.45475 -0.06913 -0.01502 1.28562 1.35651 1.46209 1.46600 1.64969 2.00749 2.27267 2.47670 2.52144 2.92780 3.03421 3.36555 3.44940 3.65649 3.69848 3.86797 3.99646 4.33248 4.37748 4.47641 4.72761 4.75630 4.83997 4.90609 4.99794 5.10801 5.18156 5.36092 5.45908 5.50367 5.71754 5.88042 5.92216 6.26992 6.61012 7.13145 7.22367 7.56621 8.75358 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.002817 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.316581 B = 9935.787549 C =10401.705389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.248 3.752 3 H 0.034 0.966 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.923 3.077 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.253 1.253 12 N -0.709 5.709 13 C 0.693 3.307 14 O -0.623 6.623 15 N -0.671 5.671 16 C 0.171 3.829 17 C -0.101 4.101 18 C -0.139 4.139 19 C 0.049 3.951 20 O -0.328 6.328 21 C 0.407 3.593 22 F -0.206 7.206 23 F -0.204 7.204 24 C 0.084 3.916 25 F -0.140 7.140 26 C -0.144 4.144 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.271 0.729 31 H 0.406 0.594 32 H 0.428 0.572 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.236 0.764 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 -1.041 28.226 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.144 3.856 3 H 0.052 0.948 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.178 1.178 12 N -0.362 5.362 13 C 0.393 3.607 14 O -0.504 6.504 15 N -0.321 5.321 16 C 0.074 3.926 17 C -0.122 4.122 18 C -0.158 4.158 19 C 0.004 3.996 20 O -0.246 6.246 21 C 0.319 3.681 22 F -0.188 7.188 23 F -0.186 7.186 24 C 0.064 3.936 25 F -0.119 7.119 26 C -0.165 4.165 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.268 0.732 33 H 0.195 0.805 34 H 0.183 0.817 35 H 0.252 0.748 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.066 0.191 27.988 27.989 hybrid contribution 0.378 0.083 -0.791 0.880 sum 0.312 0.274 27.197 27.201 Atomic orbital electron populations 1.22125 0.97170 1.01320 0.99412 1.18888 0.91815 0.93109 0.81749 0.94832 1.21174 1.44261 0.94926 0.95849 0.92171 1.25572 0.93754 1.02230 0.95041 1.69973 1.46572 1.37692 1.02465 0.86096 0.79356 0.81670 0.78118 1.20181 1.20169 1.17754 1.45565 1.68500 1.14262 1.07856 1.16272 0.78330 0.84976 0.81100 1.90866 1.58851 1.15970 1.84731 1.42434 1.67372 1.17177 1.05089 1.17316 0.98825 0.90898 0.85531 1.21083 0.99828 1.02501 0.88758 1.21420 1.02462 0.91188 1.00706 1.18811 1.04123 0.92512 0.84152 1.86681 1.85766 1.39078 1.13090 1.24293 0.71255 0.81998 0.90598 1.93089 1.41163 1.88013 1.96531 1.93087 1.66701 1.62767 1.96065 1.16820 1.06606 0.78363 0.91860 1.91470 1.91228 1.32024 1.97173 1.21116 1.02844 0.95946 0.96632 0.94582 0.93325 0.92227 0.91999 0.75818 0.73210 0.80489 0.81689 0.74822 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.47 71.98 0.68 -5.24 16 2 C 0.25 11.37 2.20 44.25 0.10 11.46 16 3 H 0.03 1.70 4.50 -2.39 -0.01 1.69 16 4 C -0.52 -27.40 9.05 25.60 0.23 -27.17 16 5 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 6 C 0.03 1.92 5.47 84.65 0.46 2.38 16 7 N -0.93 -54.38 13.96 21.45 0.30 -54.09 16 8 Si 0.92 43.95 27.31 68.60 1.87 45.82 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.25 -11.91 6.36 99.48 0.63 -11.28 16 12 N -0.71 -26.43 5.07 -461.40 -2.34 -28.77 16 13 C 0.69 25.19 8.37 179.05 1.50 26.69 16 14 O -0.62 -27.92 13.45 -3.99 -0.05 -27.98 16 15 N -0.67 -17.29 5.35 -317.08 -1.70 -18.99 16 16 C 0.17 4.43 6.30 38.09 0.24 4.67 16 17 C -0.10 -1.88 9.96 22.39 0.22 -1.66 16 18 C -0.14 -2.66 8.25 22.34 0.18 -2.47 16 19 C 0.05 1.17 6.49 22.52 0.15 1.32 16 20 O -0.33 -6.47 10.29 -93.89 -0.97 -7.44 16 21 C 0.41 4.33 5.98 113.37 0.68 5.01 16 22 F -0.21 -2.84 15.58 44.97 0.70 -2.14 16 23 F -0.20 -2.64 15.58 44.97 0.70 -1.94 16 24 C 0.08 2.48 7.31 22.44 0.16 2.64 16 25 F -0.14 -4.48 17.11 44.97 0.77 -3.71 16 26 C -0.14 -4.53 8.67 22.42 0.19 -4.34 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 31 H 0.41 12.67 8.61 -92.71 -0.80 11.87 16 32 H 0.43 7.41 8.84 -92.71 -0.82 6.59 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.17 2.46 5.09 -2.91 -0.01 2.45 16 35 H 0.24 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.14 5.09 6.24 -2.91 -0.02 5.07 16 Total: -1.00 -72.60 322.05 3.58 -69.02 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.51 Total: 16.92 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 4.80 Total: 13.29 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -3.74 Total: -101.84 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.02 Total: -35.42 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 2.17 Total: -7.79 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.87 Total: 45.82 kcal Total: -72.60 3.58 -69.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156784408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.333 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds