Wall clock time and date at job start Tue Mar 31 2020 11:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 C 1.50696 * 109.46884 * 239.99962 * 2 1 3 5 5 H 1.08001 * 120.00252 * 265.08252 * 4 2 1 6 6 C 1.37880 * 120.00214 * 85.08438 * 4 2 1 7 7 N 1.31518 * 120.00150 * 185.00888 * 6 4 2 8 8 Si 1.86799 * 119.99627 * 5.01230 * 6 4 2 9 9 H 1.48503 * 109.47012 * 94.93404 * 8 6 4 10 10 H 1.48496 * 109.46897 * 214.93220 * 8 6 4 11 11 H 1.48498 * 109.47229 * 334.92999 * 8 6 4 12 12 N 1.46500 * 109.46682 * 119.99908 * 2 1 3 13 13 C 1.34770 * 119.99979 * 275.00064 * 12 2 1 14 14 O 1.21589 * 120.00341 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99786 * 180.02562 * 13 12 2 16 16 C 1.40277 * 120.00015 * 184.43777 * 15 13 12 17 17 C 1.38685 * 120.06418 * 325.36786 * 16 15 13 18 18 C 1.38214 * 120.01155 * 179.97438 * 17 16 15 19 19 C 1.38468 * 120.13454 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.93659 * 179.97438 * 19 18 17 21 21 C 1.38437 * 120.12709 * 359.77027 * 19 18 17 22 22 C 1.38547 * 119.98890 * 0.48192 * 21 19 18 23 23 O 1.35971 * 120.06960 * 179.76566 * 22 21 19 24 24 C 1.42905 * 117.00116 * 359.73021 * 23 22 21 25 25 F 1.39901 * 109.47097 * 59.99541 * 24 23 22 26 26 F 1.39906 * 109.46794 * 299.99876 * 24 23 22 27 27 H 1.09000 * 109.47264 * 305.00799 * 1 2 3 28 28 H 1.09005 * 109.46699 * 65.00307 * 1 2 3 29 29 H 1.08992 * 109.47394 * 185.00196 * 1 2 3 30 30 H 0.96995 * 119.99871 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99642 * 95.00455 * 12 2 1 32 32 H 0.97001 * 120.00171 * 4.43877 * 15 13 12 33 33 H 1.07996 * 119.99510 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.93269 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.00836 * 180.25281 * 21 19 18 36 36 H 1.08994 * 109.46975 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2879 -1.7586 -1.1823 6 6 2.1657 -0.0222 -2.4177 7 7 2.5092 -0.6625 -3.5140 8 14 1.8585 1.8196 -2.4692 9 1 3.1474 2.5409 -2.3148 10 1 1.2410 2.1823 -3.7700 11 1 0.9429 2.1998 -1.3636 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8583 1.1616 2.4116 15 7 2.5966 -0.6535 3.4575 16 6 2.6426 0.0204 4.6869 17 6 2.9378 1.3749 4.7261 18 6 2.9823 2.0379 5.9380 19 6 2.7319 1.3527 7.1149 20 9 2.7770 2.0047 8.2973 21 6 2.4314 0.0018 7.0819 22 6 2.3906 -0.6692 5.8704 23 8 2.1003 -1.9971 5.8365 24 6 1.8536 -2.6395 7.0890 25 9 0.7614 -2.0318 7.7176 26 9 2.9849 -2.5227 7.9038 27 1 -0.3634 0.5896 0.8417 28 1 -0.3633 0.4343 -0.9315 29 1 -0.3634 -1.0237 0.0896 30 1 2.6026 -0.1784 -4.3493 31 1 2.2490 -1.6318 1.1526 32 1 2.8885 -1.5768 3.3993 33 1 3.1331 1.9117 3.8095 34 1 3.2119 3.0928 5.9670 35 1 2.2325 -0.5299 8.0007 36 1 1.6355 -3.6939 6.9198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161216984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:08 Heat of formation + Delta-G solvation = -187.090237 kcal Electronic energy + Delta-G solvation = -26577.347863 eV Core-core repulsion = 22033.366462 eV Total energy + Delta-G solvation = -4543.981402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.71298 -48.99108 -47.69581 -40.75907 -39.31937 -37.46859 -35.27458 -34.29305 -32.43243 -30.75398 -30.22129 -28.50661 -26.45286 -25.29785 -23.51468 -22.79053 -21.31148 -19.99040 -19.50039 -18.87480 -18.47717 -18.26487 -17.35293 -17.05888 -16.55405 -16.02441 -15.73405 -15.58481 -15.16681 -14.89033 -14.63235 -14.29092 -14.20481 -14.08087 -13.99410 -13.81094 -13.36666 -13.13232 -12.88347 -12.62589 -12.51429 -12.36441 -12.02766 -11.56450 -11.48303 -11.19444 -10.85841 -10.56193 -10.18528 -9.90280 -9.61814 -9.24745 -8.96918 -8.74475 -8.33197 -7.85988 -6.26280 -4.29595 0.95039 0.99861 2.14388 2.90676 3.08293 3.23748 3.26618 3.32869 3.40276 3.70676 3.87742 4.12216 4.25995 4.29912 4.52021 4.59785 4.77138 4.86075 5.12829 5.26837 5.49046 5.73465 5.87186 6.12841 6.27996 6.33656 6.43122 6.49924 6.64775 6.80895 6.92360 7.04262 7.29313 7.38453 7.49626 8.19473 8.56197 8.73719 9.00060 9.35216 10.85458 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.003280 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.710193 B = 8535.003788 C = 9412.819524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.249 3.751 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.870 3.130 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.254 1.254 12 N -0.710 5.710 13 C 0.695 3.305 14 O -0.587 6.587 15 N -0.687 5.687 16 C 0.164 3.836 17 C -0.064 4.064 18 C -0.153 4.153 19 C 0.109 3.891 20 F -0.138 7.138 21 C -0.209 4.209 22 C 0.097 3.903 23 O -0.314 6.314 24 C 0.412 3.588 25 F -0.197 7.197 26 F -0.198 7.198 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.409 0.591 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -3.545 21.730 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.696 3.304 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.178 1.178 12 N -0.361 5.361 13 C 0.396 3.604 14 O -0.465 6.465 15 N -0.335 5.335 16 C 0.066 3.934 17 C -0.084 4.084 18 C -0.172 4.172 19 C 0.088 3.912 20 F -0.116 7.116 21 C -0.229 4.229 22 C 0.051 3.949 23 O -0.232 6.232 24 C 0.322 3.678 25 F -0.179 7.179 26 F -0.180 7.180 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.244 0.756 33 H 0.183 0.817 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.167 -2.562 21.329 21.483 hybrid contribution 0.073 0.091 0.365 0.384 sum 0.239 -2.471 21.694 21.836 Atomic orbital electron populations 1.22307 0.98728 1.00111 0.99813 1.19080 0.90665 0.94169 0.81424 0.93089 1.20988 1.45818 0.98358 0.91972 0.90334 1.24865 0.93732 0.98461 0.95236 1.69881 1.46556 1.36407 0.99700 0.86952 0.79570 0.85696 0.78147 1.20051 1.21002 1.17815 1.45766 1.68203 1.13671 1.08489 1.16145 0.78434 0.85446 0.80390 1.90853 1.57496 1.14108 1.84063 1.42654 1.68307 1.16597 1.05932 1.16845 1.02117 0.91939 0.82481 1.21237 0.95936 0.92207 0.99044 1.21096 1.04282 1.01370 0.90489 1.17247 1.02882 0.89807 0.81243 1.91493 1.94080 1.81079 1.44987 1.21144 1.09275 0.94908 0.97602 1.18218 1.01317 0.82307 0.93085 1.86621 1.84820 1.21064 1.30688 1.23398 0.72966 0.96182 0.75267 1.93110 1.55397 1.86180 1.83210 1.93107 1.53401 1.97062 1.74461 0.95121 0.92650 0.93593 0.92232 0.77412 0.75578 0.81693 0.83968 0.83669 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.05 37.16 0.34 -2.91 16 2 C 0.25 5.72 2.09 -69.08 -0.14 5.58 16 3 H 0.05 1.27 5.15 -51.93 -0.27 1.01 16 4 C -0.53 -13.87 9.06 -34.44 -0.31 -14.19 16 5 H 0.08 2.15 8.02 -52.49 -0.42 1.73 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 8 Si 0.87 20.81 26.35 -169.99 -4.48 16.33 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.25 -5.95 5.97 56.52 0.34 -5.62 16 12 N -0.71 -13.54 5.07 -59.81 -0.30 -13.84 16 13 C 0.70 12.82 8.38 -86.92 -0.73 12.09 16 14 O -0.59 -12.63 13.42 5.29 0.07 -12.56 16 15 N -0.69 -9.87 5.20 -14.09 -0.07 -9.94 16 16 C 0.16 2.32 6.33 -83.44 -0.53 1.79 16 17 C -0.06 -0.91 8.70 -39.43 -0.34 -1.25 16 18 C -0.15 -1.89 10.02 -39.51 -0.40 -2.29 16 19 C 0.11 1.37 7.30 -39.42 -0.29 1.08 16 20 F -0.14 -1.73 17.26 2.25 0.04 -1.70 16 21 C -0.21 -2.56 8.23 -39.39 -0.32 -2.89 16 22 C 0.10 1.22 6.50 -39.08 -0.25 0.96 16 23 O -0.31 -3.23 9.99 -19.65 -0.20 -3.43 16 24 C 0.41 2.99 5.98 101.05 0.60 3.60 16 25 F -0.20 -1.82 15.57 2.25 0.04 -1.79 16 26 F -0.20 -1.71 15.60 2.25 0.04 -1.67 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.21 6.90 -51.93 -0.36 0.85 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.39 6.47 8.58 -40.82 -0.35 6.12 16 32 H 0.41 4.70 8.58 -40.82 -0.35 4.35 16 33 H 0.17 2.60 6.19 -52.49 -0.32 2.27 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.15 1.63 5.10 -52.49 -0.27 1.37 16 36 H 0.18 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -31.71 319.01 -4.99 -36.71 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.23 Total: 8.25 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.47 Total: 3.70 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.40 Total: -48.66 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.13 Total: -15.98 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.48 Total: 16.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.71 -4.99 -36.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161216984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.385 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds