Wall clock time and date at job start Tue Mar 31 2020 11:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 C 1.50696 * 109.46884 * 239.99962 * 2 1 3 5 5 H 1.08001 * 120.00252 * 265.08252 * 4 2 1 6 6 C 1.37880 * 120.00214 * 85.08438 * 4 2 1 7 7 N 1.31518 * 120.00150 * 185.00888 * 6 4 2 8 8 Si 1.86799 * 119.99627 * 5.01230 * 6 4 2 9 9 H 1.48503 * 109.47012 * 94.93404 * 8 6 4 10 10 H 1.48496 * 109.46897 * 214.93220 * 8 6 4 11 11 H 1.48498 * 109.47229 * 334.92999 * 8 6 4 12 12 N 1.46500 * 109.46682 * 119.99908 * 2 1 3 13 13 C 1.34770 * 119.99979 * 275.00064 * 12 2 1 14 14 O 1.21589 * 120.00341 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99786 * 180.02562 * 13 12 2 16 16 C 1.40277 * 120.00015 * 184.43777 * 15 13 12 17 17 C 1.38685 * 120.06418 * 325.36786 * 16 15 13 18 18 C 1.38214 * 120.01155 * 179.97438 * 17 16 15 19 19 C 1.38468 * 120.13454 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.93659 * 179.97438 * 19 18 17 21 21 C 1.38437 * 120.12709 * 359.77027 * 19 18 17 22 22 C 1.38547 * 119.98890 * 0.48192 * 21 19 18 23 23 O 1.35971 * 120.06960 * 179.76566 * 22 21 19 24 24 C 1.42905 * 117.00116 * 359.73021 * 23 22 21 25 25 F 1.39901 * 109.47097 * 59.99541 * 24 23 22 26 26 F 1.39906 * 109.46794 * 299.99876 * 24 23 22 27 27 H 1.09000 * 109.47264 * 305.00799 * 1 2 3 28 28 H 1.09005 * 109.46699 * 65.00307 * 1 2 3 29 29 H 1.08992 * 109.47394 * 185.00196 * 1 2 3 30 30 H 0.96995 * 119.99871 * 179.97438 * 7 6 4 31 31 H 0.97006 * 119.99642 * 95.00455 * 12 2 1 32 32 H 0.97001 * 120.00171 * 4.43877 * 15 13 12 33 33 H 1.07996 * 119.99510 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.93269 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.00836 * 180.25281 * 21 19 18 36 36 H 1.08994 * 109.46975 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2879 -1.7586 -1.1823 6 6 2.1657 -0.0222 -2.4177 7 7 2.5092 -0.6625 -3.5140 8 14 1.8585 1.8196 -2.4692 9 1 3.1474 2.5409 -2.3148 10 1 1.2410 2.1823 -3.7700 11 1 0.9429 2.1998 -1.3636 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8583 1.1616 2.4116 15 7 2.5966 -0.6535 3.4575 16 6 2.6426 0.0204 4.6869 17 6 2.9378 1.3749 4.7261 18 6 2.9823 2.0379 5.9380 19 6 2.7319 1.3527 7.1149 20 9 2.7770 2.0047 8.2973 21 6 2.4314 0.0018 7.0819 22 6 2.3906 -0.6692 5.8704 23 8 2.1003 -1.9971 5.8365 24 6 1.8536 -2.6395 7.0890 25 9 0.7614 -2.0318 7.7176 26 9 2.9849 -2.5227 7.9038 27 1 -0.3634 0.5896 0.8417 28 1 -0.3633 0.4343 -0.9315 29 1 -0.3634 -1.0237 0.0896 30 1 2.6026 -0.1784 -4.3493 31 1 2.2490 -1.6318 1.1526 32 1 2.8885 -1.5768 3.3993 33 1 3.1331 1.9117 3.8095 34 1 3.2119 3.0928 5.9670 35 1 2.2325 -0.5299 8.0007 36 1 1.6355 -3.6939 6.9198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161216984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:07 Heat of formation + Delta-G solvation = -209.240924 kcal Electronic energy + Delta-G solvation = -26578.308389 eV Core-core repulsion = 22033.366462 eV Total energy + Delta-G solvation = -4544.941928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.34640 -49.99121 -48.33346 -41.90593 -40.52656 -38.45612 -36.89249 -35.65563 -34.37223 -31.90051 -31.63217 -29.73173 -27.26584 -27.14281 -24.65489 -23.79207 -22.76263 -21.59958 -20.39805 -20.04511 -19.62525 -18.92148 -18.47636 -18.37023 -17.84466 -17.13004 -16.95301 -16.73810 -16.37821 -16.14788 -15.92542 -15.54835 -15.10744 -14.96721 -14.92596 -14.82101 -14.66326 -14.57469 -14.29633 -14.05009 -13.66237 -13.42503 -13.31866 -13.04581 -12.93705 -12.77245 -12.41605 -12.34338 -11.79665 -11.43608 -11.20661 -11.11309 -10.80117 -10.00367 -9.88791 -9.00277 -8.35617 -6.41425 -0.09480 0.00353 1.32573 1.39239 1.42148 1.50421 1.63495 2.02732 2.31281 2.46879 2.49992 3.00264 3.06585 3.31327 3.48490 3.59381 3.66606 3.82242 3.90127 4.19210 4.44993 4.51289 4.72614 4.75802 4.85393 4.91308 5.06736 5.11246 5.31758 5.34810 5.39923 5.49538 5.69917 5.86313 5.92900 6.28149 6.63079 7.11560 7.24972 7.56825 8.79281 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.003280 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.710193 B = 8535.003788 C = 9412.819524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.255 3.745 3 H 0.033 0.967 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.033 3.967 7 N -0.932 5.932 8 Si 0.923 3.077 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.247 1.247 12 N -0.710 5.710 13 C 0.698 3.302 14 O -0.618 6.618 15 N -0.669 5.669 16 C 0.140 3.860 17 C -0.074 4.074 18 C -0.150 4.150 19 C 0.108 3.892 20 F -0.137 7.137 21 C -0.211 4.211 22 C 0.107 3.893 23 O -0.318 6.318 24 C 0.406 3.594 25 F -0.209 7.209 26 F -0.206 7.206 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.270 0.730 31 H 0.405 0.595 32 H 0.423 0.577 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -3.891 23.614 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.151 3.849 3 H 0.051 0.949 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.167 4.167 7 N -0.570 5.570 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.171 1.171 12 N -0.362 5.362 13 C 0.399 3.601 14 O -0.499 6.499 15 N -0.318 5.318 16 C 0.044 3.956 17 C -0.095 4.095 18 C -0.169 4.169 19 C 0.088 3.912 20 F -0.115 7.115 21 C -0.230 4.230 22 C 0.061 3.939 23 O -0.236 6.236 24 C 0.317 3.683 25 F -0.191 7.191 26 F -0.188 7.188 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.241 0.759 32 H 0.261 0.739 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.257 -2.951 23.270 23.458 hybrid contribution 0.235 0.108 -0.059 0.266 sum -0.021 -2.843 23.210 23.384 Atomic orbital electron populations 1.22200 0.97418 1.00984 0.99713 1.18780 0.91536 0.93005 0.81591 0.94897 1.21183 1.44668 0.97587 0.93137 0.92423 1.25542 0.93956 1.02148 0.95075 1.69982 1.48651 1.38003 1.00394 0.86110 0.79476 0.81247 0.78434 1.20111 1.20392 1.17070 1.45385 1.68668 1.14184 1.07952 1.16120 0.78204 0.84984 0.80829 1.90838 1.58788 1.15557 1.84687 1.42302 1.67437 1.17058 1.05049 1.16977 1.03718 0.92258 0.82661 1.21133 0.96821 0.92519 0.99031 1.21210 1.03677 1.02273 0.89764 1.17338 1.02563 0.90038 0.81264 1.91499 1.94036 1.81106 1.44895 1.21296 1.08922 0.94876 0.97943 1.18135 1.00067 0.83391 0.92332 1.86638 1.84448 1.19676 1.32791 1.24365 0.72131 0.97829 0.73973 1.93088 1.55973 1.86625 1.83386 1.93092 1.53932 1.97123 1.74655 0.94618 0.93207 0.92346 0.92085 0.75942 0.73882 0.83491 0.82087 0.82638 0.74486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.02 9.05 71.98 0.65 -5.37 16 2 C 0.26 11.54 2.09 44.25 0.09 11.64 16 3 H 0.03 1.63 5.15 -2.39 -0.01 1.62 16 4 C -0.53 -27.49 9.06 25.60 0.23 -27.26 16 5 H 0.06 3.19 8.02 -2.91 -0.02 3.16 16 6 C 0.03 1.80 5.47 84.65 0.46 2.27 16 7 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 8 Si 0.92 42.91 26.35 68.60 1.81 44.71 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.25 -11.12 5.97 99.48 0.59 -10.52 16 12 N -0.71 -26.43 5.07 -461.41 -2.34 -28.77 16 13 C 0.70 25.16 8.38 179.06 1.50 26.66 16 14 O -0.62 -26.38 13.42 -4.00 -0.05 -26.43 16 15 N -0.67 -18.40 5.20 -316.74 -1.65 -20.05 16 16 C 0.14 3.81 6.33 38.15 0.24 4.06 16 17 C -0.07 -2.08 8.70 22.37 0.19 -1.88 16 18 C -0.15 -3.53 10.02 22.32 0.22 -3.31 16 19 C 0.11 2.55 7.30 22.37 0.16 2.71 16 20 F -0.14 -3.20 17.26 44.97 0.78 -2.42 16 21 C -0.21 -4.75 8.23 22.39 0.18 -4.57 16 22 C 0.11 2.49 6.50 22.59 0.15 2.64 16 23 O -0.32 -5.70 9.99 -93.22 -0.93 -6.63 16 24 C 0.41 4.62 5.98 113.37 0.68 5.30 16 25 F -0.21 -3.33 15.57 44.97 0.70 -2.63 16 26 F -0.21 -3.01 15.60 44.97 0.70 -2.31 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 2.10 6.90 -2.38 -0.02 2.09 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 31 H 0.41 12.93 8.58 -92.70 -0.80 12.14 16 32 H 0.42 9.00 8.58 -92.71 -0.80 8.20 16 33 H 0.15 4.68 6.19 -2.91 -0.02 4.66 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.16 3.16 5.10 -2.91 -0.01 3.15 16 36 H 0.24 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -67.98 319.01 3.56 -64.42 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.52 Total: 21.31 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 4.77 Total: 12.88 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.69 Total: -102.90 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.98 Total: -33.06 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 2.18 Total: -7.36 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.81 Total: 44.71 kcal Total: -67.98 3.56 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161216984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.821 kcal (2) G-P(sol) polarization free energy of solvation -67.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds