Wall clock time and date at job start Tue Mar 31 2020 11:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99807 * 2 1 4 4 C 1.50702 * 109.47323 * 90.00098 * 3 2 1 5 5 H 1.08002 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99811 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 119.99862 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47241 * 90.00337 * 8 6 4 10 10 H 1.48503 * 109.47031 * 209.99887 * 8 6 4 11 11 H 1.48498 * 109.47450 * 329.99752 * 8 6 4 12 12 C 1.34780 * 119.99918 * 180.02562 * 2 1 3 13 13 O 1.21507 * 119.99536 * 187.04949 * 12 2 1 14 14 C 1.48155 * 120.00142 * 7.04541 * 12 2 1 15 15 C 1.39969 * 120.89188 * 19.40696 * 14 12 2 16 16 C 1.37980 * 119.13546 * 179.74678 * 15 14 12 17 17 N 1.31910 * 120.97159 * 0.53856 * 16 15 14 18 18 C 1.32171 * 121.97669 * 359.71676 * 17 16 15 19 19 O 1.35684 * 119.62581 * 180.02562 * 18 17 16 20 20 C 1.42892 * 116.99816 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.47210 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.46899 * 60.00035 * 21 20 19 23 23 F 1.39899 * 109.47202 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47006 * 300.00600 * 21 20 19 25 25 C 1.38892 * 120.75032 * 0.02562 * 18 17 16 26 26 H 1.09000 * 109.47256 * 84.71774 * 1 2 3 27 27 H 1.09000 * 109.47127 * 204.71066 * 1 2 3 28 28 H 1.08998 * 109.47401 * 324.71126 * 1 2 3 29 29 H 1.08999 * 109.47074 * 329.99644 * 3 2 1 30 30 H 1.09000 * 109.47014 * 209.99896 * 3 2 1 31 31 H 0.97007 * 119.99867 * 180.02562 * 7 6 4 32 32 H 1.07999 * 120.43417 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.51486 * 180.27124 * 16 15 14 34 34 H 1.08996 * 109.47758 * 300.00124 * 20 19 18 35 35 H 1.09002 * 109.47144 * 60.00682 * 20 19 18 36 36 H 1.08005 * 120.53000 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.5541 3.6176 0.6731 8 14 3.4375 3.4170 3.4338 9 1 4.7321 2.8595 3.9013 10 1 3.4860 4.9000 3.4960 11 1 2.3416 2.9208 4.3043 12 6 2.1389 -1.1672 -0.0005 13 8 3.3471 -1.1712 0.1286 14 6 1.4065 -2.4454 -0.1585 15 6 0.1163 -2.4721 -0.7004 16 6 -0.5305 -3.6834 -0.8359 17 7 0.0453 -4.8069 -0.4534 18 6 1.2596 -4.8289 0.0680 19 8 1.8064 -6.0121 0.4447 20 6 1.0142 -7.1849 0.2476 21 6 1.7911 -8.4120 0.7288 22 9 2.0873 -8.2726 2.0889 23 9 1.0157 -9.5603 0.5352 24 9 2.9810 -8.5252 0.0017 25 6 1.9823 -3.6546 0.2346 26 1 -0.3634 0.0946 -1.0233 27 1 -0.3633 -0.9336 0.4296 28 1 -0.3634 0.8388 0.5937 29 1 1.6084 2.0283 -0.5139 30 1 3.1499 1.1384 -0.5138 31 1 4.0316 4.4432 0.8504 32 1 -0.3650 -1.5571 -1.0126 33 1 -1.5244 -3.7116 -1.2574 34 1 0.0874 -7.0969 0.8144 35 1 0.7831 -7.2933 -0.8121 36 1 2.9741 -3.6766 0.6614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161624835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:45 Heat of formation + Delta-G solvation = -159.509555 kcal Electronic energy + Delta-G solvation = -25913.633367 eV Core-core repulsion = 21370.847953 eV Total energy + Delta-G solvation = -4542.785414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.47434 -48.03501 -47.91828 -41.06756 -39.35428 -37.91637 -35.21671 -33.14011 -32.32640 -31.57847 -29.71136 -27.94912 -26.51697 -24.83076 -23.74601 -23.36876 -22.37768 -20.06688 -19.00592 -18.88205 -18.32902 -17.87545 -16.91555 -16.66178 -16.43720 -16.21663 -15.54534 -15.22721 -14.88921 -14.82456 -14.68617 -14.45162 -14.38107 -14.09536 -14.08995 -13.99429 -13.87644 -13.63604 -13.05186 -12.71819 -12.41525 -12.26191 -12.13168 -11.76569 -11.40669 -11.14553 -10.95477 -10.66103 -10.23668 -10.09686 -9.95755 -9.70221 -9.20301 -8.75581 -8.49764 -7.84432 -6.11146 -4.16151 0.71178 0.94473 1.81613 2.63337 3.15141 3.28495 3.33260 3.34868 3.36822 3.58545 3.62861 3.84950 3.85959 4.06151 4.39686 4.60146 4.60792 4.68954 4.79529 4.94310 5.00807 5.23801 5.45431 5.54920 5.61045 5.66855 5.96938 6.04701 6.09300 6.76486 6.89472 7.27902 7.36092 7.51231 7.84172 8.12581 8.16773 8.72003 8.90014 9.49139 10.97113 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002658 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.791173 B =10530.829607 C =11234.205733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.588 5.588 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.542 3.458 13 O -0.521 6.521 14 C -0.037 4.037 15 C -0.195 4.195 16 C 0.131 3.869 17 N -0.534 5.534 18 C 0.311 3.689 19 O -0.291 6.291 20 C 0.029 3.971 21 C 0.462 3.538 22 F -0.174 7.174 23 F -0.173 7.173 24 F -0.174 7.174 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 -20.234 -3.705 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.319 5.319 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.327 3.673 13 O -0.397 6.397 14 C -0.048 4.048 15 C -0.215 4.215 16 C -0.024 4.024 17 N -0.259 5.259 18 C 0.133 3.867 19 O -0.199 6.199 20 C -0.049 4.049 21 C 0.408 3.592 22 F -0.155 7.155 23 F -0.154 7.154 24 F -0.155 7.155 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.853 -20.875 -3.641 23.807 hybrid contribution 0.480 0.816 1.061 1.422 sum -10.373 -20.059 -2.580 22.729 Atomic orbital electron populations 1.22329 0.81549 1.03330 1.00648 1.48074 1.06308 1.07496 1.70044 1.19396 0.92489 0.77505 0.97912 1.21392 1.36849 1.06378 0.92106 0.92325 1.24932 0.95223 0.96300 0.97587 1.69925 1.38172 1.14423 1.30805 0.86470 0.78864 0.77540 0.84398 1.20457 1.21103 1.19891 1.17989 0.87198 0.82960 0.79170 1.90789 1.13660 1.86478 1.48782 1.20541 0.94089 0.94416 0.95781 1.23243 0.95144 1.01352 1.01786 1.22367 0.99352 0.86065 0.94618 1.67055 1.10337 1.32942 1.15534 1.19384 0.89164 0.84763 0.93373 1.86213 1.41875 1.12261 1.79529 1.23563 0.94244 0.81593 1.05482 1.20121 0.78412 0.84718 0.75955 1.93241 1.93644 1.95764 1.32866 1.93222 1.74997 1.52210 1.94972 1.93242 1.48559 1.96449 1.77279 1.21129 1.02311 0.88497 1.02865 0.92716 0.90722 0.90519 0.94446 0.93687 0.92604 0.81402 0.81598 0.86917 0.86913 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 8.67 59.85 0.52 1.43 16 2 N -0.59 -11.80 2.86 -183.97 -0.53 -12.32 16 3 C 0.25 6.16 5.13 -5.19 -0.03 6.13 16 4 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 C 0.54 11.00 7.55 -12.19 -0.09 10.91 16 13 O -0.52 -12.88 16.26 5.36 0.09 -12.80 16 14 C -0.04 -0.57 5.60 -104.68 -0.59 -1.16 16 15 C -0.20 -2.22 7.71 -39.03 -0.30 -2.52 16 16 C 0.13 1.26 11.17 -17.61 -0.20 1.07 16 17 N -0.53 -6.07 9.18 -13.38 -0.12 -6.19 16 18 C 0.31 4.04 7.49 -17.16 -0.13 3.91 16 19 O -0.29 -3.51 10.00 -18.75 -0.19 -3.70 16 20 C 0.03 0.25 5.27 37.16 0.20 0.44 16 21 C 0.46 4.23 3.32 37.16 0.12 4.36 16 22 F -0.17 -1.85 17.26 2.25 0.04 -1.81 16 23 F -0.17 -1.46 17.32 2.25 0.04 -1.42 16 24 F -0.17 -1.84 17.26 2.25 0.04 -1.80 16 25 C -0.13 -1.89 9.61 -38.84 -0.37 -2.26 16 26 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.07 0.88 5.07 -51.93 -0.26 0.61 16 28 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.27 7.53 -51.93 -0.39 0.88 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.17 1.59 4.15 -52.49 -0.22 1.37 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.11 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.11 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.16 2.41 7.86 -52.48 -0.41 2.00 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -33.11 328.97 -4.55 -37.66 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -3.31 Total: -2.83 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.29 Total: 9.00 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.09 Total: -43.79 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.10 Total: -16.49 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.12 Total: -5.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.11 -4.55 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161624835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.846 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds