Wall clock time and date at job start Tue Mar 31 2020 11:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99807 * 2 1 4 4 C 1.50702 * 109.47323 * 90.00098 * 3 2 1 5 5 H 1.08002 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99811 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 119.99862 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47241 * 90.00337 * 8 6 4 10 10 H 1.48503 * 109.47031 * 209.99887 * 8 6 4 11 11 H 1.48498 * 109.47450 * 329.99752 * 8 6 4 12 12 C 1.34780 * 119.99918 * 180.02562 * 2 1 3 13 13 O 1.21507 * 119.99536 * 187.04949 * 12 2 1 14 14 C 1.48155 * 120.00142 * 7.04541 * 12 2 1 15 15 C 1.39969 * 120.89188 * 19.40696 * 14 12 2 16 16 C 1.37980 * 119.13546 * 179.74678 * 15 14 12 17 17 N 1.31910 * 120.97159 * 0.53856 * 16 15 14 18 18 C 1.32171 * 121.97669 * 359.71676 * 17 16 15 19 19 O 1.35684 * 119.62581 * 180.02562 * 18 17 16 20 20 C 1.42892 * 116.99816 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.47210 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.46899 * 60.00035 * 21 20 19 23 23 F 1.39899 * 109.47202 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47006 * 300.00600 * 21 20 19 25 25 C 1.38892 * 120.75032 * 0.02562 * 18 17 16 26 26 H 1.09000 * 109.47256 * 84.71774 * 1 2 3 27 27 H 1.09000 * 109.47127 * 204.71066 * 1 2 3 28 28 H 1.08998 * 109.47401 * 324.71126 * 1 2 3 29 29 H 1.08999 * 109.47074 * 329.99644 * 3 2 1 30 30 H 1.09000 * 109.47014 * 209.99896 * 3 2 1 31 31 H 0.97007 * 119.99867 * 180.02562 * 7 6 4 32 32 H 1.07999 * 120.43417 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.51486 * 180.27124 * 16 15 14 34 34 H 1.08996 * 109.47758 * 300.00124 * 20 19 18 35 35 H 1.09002 * 109.47144 * 60.00682 * 20 19 18 36 36 H 1.08005 * 120.53000 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.5541 3.6176 0.6731 8 14 3.4375 3.4170 3.4338 9 1 4.7321 2.8595 3.9013 10 1 3.4860 4.9000 3.4960 11 1 2.3416 2.9208 4.3043 12 6 2.1389 -1.1672 -0.0005 13 8 3.3471 -1.1712 0.1286 14 6 1.4065 -2.4454 -0.1585 15 6 0.1163 -2.4721 -0.7004 16 6 -0.5305 -3.6834 -0.8359 17 7 0.0453 -4.8069 -0.4534 18 6 1.2596 -4.8289 0.0680 19 8 1.8064 -6.0121 0.4447 20 6 1.0142 -7.1849 0.2476 21 6 1.7911 -8.4120 0.7288 22 9 2.0873 -8.2726 2.0889 23 9 1.0157 -9.5603 0.5352 24 9 2.9810 -8.5252 0.0017 25 6 1.9823 -3.6546 0.2346 26 1 -0.3634 0.0946 -1.0233 27 1 -0.3633 -0.9336 0.4296 28 1 -0.3634 0.8388 0.5937 29 1 1.6084 2.0283 -0.5139 30 1 3.1499 1.1384 -0.5138 31 1 4.0316 4.4432 0.8504 32 1 -0.3650 -1.5571 -1.0126 33 1 -1.5244 -3.7116 -1.2574 34 1 0.0874 -7.0969 0.8144 35 1 0.7831 -7.2933 -0.8121 36 1 2.9741 -3.6766 0.6614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161624835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:44 Heat of formation + Delta-G solvation = -183.308661 kcal Electronic energy + Delta-G solvation = -25914.665373 eV Core-core repulsion = 21370.847953 eV Total energy + Delta-G solvation = -4543.817420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.22808 -48.76580 -48.71671 -42.09833 -40.68181 -38.99532 -36.86931 -34.94900 -33.66777 -32.51587 -30.61520 -29.69957 -27.86791 -26.24257 -24.82861 -24.38862 -23.74241 -21.27291 -19.87554 -19.76543 -19.16506 -18.93647 -18.72996 -17.98919 -17.37357 -17.28809 -16.98652 -16.65506 -16.16534 -16.07986 -15.62949 -15.57792 -15.16530 -15.14662 -14.88176 -14.86060 -14.75289 -14.62751 -14.52886 -14.24264 -13.91898 -13.65176 -13.32189 -12.91292 -12.88582 -12.63665 -12.57958 -12.29335 -12.12365 -11.73604 -11.31913 -11.04681 -10.66249 -10.59606 -9.68180 -9.52469 -8.24744 -6.38733 -0.39419 0.01522 1.02318 1.36371 1.39606 1.48723 1.77919 1.87230 2.19097 2.39627 2.63049 2.70110 2.88015 3.02935 3.05763 3.25476 3.44132 3.84417 3.89490 3.97079 4.01484 4.11317 4.35586 4.55993 4.62544 4.66963 4.91429 4.96565 5.05929 5.15737 5.21021 5.50403 5.76325 5.87077 6.02225 6.57204 6.60080 6.69648 7.16757 7.34072 8.82511 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002658 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.791173 B =10530.829607 C =11234.205733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.593 5.593 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.262 1.262 12 C 0.534 3.466 13 O -0.585 6.585 14 C -0.053 4.053 15 C -0.183 4.183 16 C 0.153 3.847 17 N -0.525 5.525 18 C 0.315 3.685 19 O -0.308 6.308 20 C 0.028 3.972 21 C 0.465 3.535 22 F -0.185 7.185 23 F -0.166 7.166 24 F -0.185 7.185 25 C -0.151 4.151 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.194 0.806 33 H 0.221 0.779 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.874 -21.377 -3.842 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.323 5.323 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.186 1.186 12 C 0.322 3.678 13 O -0.466 6.466 14 C -0.064 4.064 15 C -0.202 4.202 16 C -0.002 4.002 17 N -0.249 5.249 18 C 0.138 3.862 19 O -0.216 6.216 20 C -0.048 4.048 21 C 0.411 3.589 22 F -0.166 7.166 23 F -0.147 7.147 24 F -0.166 7.166 25 C -0.173 4.173 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.210 0.790 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.341 -22.047 -3.778 26.570 hybrid contribution 1.480 1.078 1.040 2.106 sum -12.861 -20.969 -2.737 24.750 Atomic orbital electron populations 1.22755 0.77561 1.04762 1.03430 1.48047 1.08777 1.05828 1.69643 1.18880 0.91277 0.79861 0.96222 1.21673 1.37055 1.06504 0.93049 0.93048 1.25806 0.94868 0.96413 1.01843 1.70030 1.38764 1.14884 1.32910 0.85454 0.78579 0.77628 0.79395 1.20910 1.19769 1.18639 1.18768 0.86834 0.84557 0.77663 1.90738 1.16600 1.87612 1.51629 1.20081 0.95830 0.91668 0.98798 1.23488 0.93006 1.03403 1.00333 1.23243 1.00578 0.84448 0.91967 1.67245 1.09134 1.33625 1.14872 1.19202 0.89401 0.84360 0.93273 1.86168 1.43011 1.12928 1.79491 1.23812 0.94153 0.79842 1.07030 1.20212 0.78134 0.85231 0.75334 1.93221 1.93755 1.95851 1.33776 1.93235 1.74686 1.51919 1.94881 1.93223 1.49388 1.96539 1.77470 1.20971 1.02016 0.89711 1.04589 0.88682 0.87718 0.91139 0.94429 0.98205 0.92303 0.78972 0.76229 0.84952 0.84987 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.43 8.67 127.77 1.11 2.54 16 2 N -0.59 -24.10 2.86 -854.24 -2.44 -26.54 16 3 C 0.26 13.51 5.13 85.63 0.44 13.95 16 4 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.57 5.46 84.65 0.46 1.03 16 7 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 8 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 12 C 0.53 22.51 7.55 86.88 0.66 23.16 16 13 O -0.58 -31.18 16.26 -3.74 -0.06 -31.24 16 14 C -0.05 -1.61 5.60 -19.90 -0.11 -1.72 16 15 C -0.18 -3.46 7.71 22.63 0.17 -3.28 16 16 C 0.15 2.13 11.17 84.62 0.94 3.07 16 17 N -0.52 -9.80 9.18 -309.14 -2.84 -12.64 16 18 C 0.32 7.68 7.49 84.80 0.63 8.32 16 19 O -0.31 -7.11 10.00 -90.02 -0.90 -8.01 16 20 C 0.03 0.42 5.27 71.98 0.38 0.80 16 21 C 0.47 7.91 3.32 71.98 0.24 8.15 16 22 F -0.18 -3.80 17.26 44.97 0.78 -3.02 16 23 F -0.17 -2.50 17.32 44.97 0.78 -1.72 16 24 F -0.18 -3.80 17.26 44.97 0.78 -3.02 16 25 C -0.15 -4.59 9.61 22.75 0.22 -4.37 16 26 H 0.10 1.71 7.16 -2.39 -0.02 1.69 16 27 H 0.10 2.07 5.07 -2.39 -0.01 2.06 16 28 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 29 H 0.04 1.93 8.07 -2.39 -0.02 1.92 16 30 H 0.00 -0.01 7.53 -2.39 -0.02 -0.03 16 31 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 32 H 0.19 2.64 4.15 -2.91 -0.01 2.63 16 33 H 0.22 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.13 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.13 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.13 4.47 7.86 -2.91 -0.02 4.45 16 Total: -1.00 -77.66 328.97 4.93 -72.73 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.14 Total: 0.78 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 5.38 Total: 20.88 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -4.99 Total: -94.07 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.96 Total: -39.25 kcal Atomic # 9 Polarization: -10.10 SS G_CDS: 2.33 Total: -7.77 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.66 4.93 -72.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161624835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.577 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds