Wall clock time and date at job start Tue Mar 31 2020 11:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50699 * 109.47030 * 240.00497 * 2 1 3 5 5 H 1.08009 * 119.99463 * 239.99611 * 4 2 1 6 6 C 1.37871 * 120.00657 * 60.26902 * 4 2 1 7 7 N 1.31523 * 119.99422 * 359.72618 * 6 4 2 8 8 Si 1.86798 * 120.00472 * 179.72759 * 6 4 2 9 9 H 1.48492 * 109.47127 * 89.99971 * 8 6 4 10 10 H 1.48502 * 109.47152 * 210.00227 * 8 6 4 11 11 H 1.48502 * 109.46830 * 329.99897 * 8 6 4 12 12 N 1.46497 * 109.47384 * 119.99788 * 2 1 3 13 13 C 1.34777 * 120.00106 * 275.00419 * 12 2 1 14 14 O 1.21596 * 119.99916 * 359.97438 * 13 12 2 15 15 N 1.34771 * 120.00022 * 180.02562 * 13 12 2 16 16 C 1.40163 * 120.00407 * 174.36127 * 15 13 12 17 17 C 1.38710 * 120.07129 * 335.22320 * 16 15 13 18 18 C 1.38391 * 119.95956 * 179.73887 * 17 16 15 19 19 F 1.35096 * 119.94176 * 180.25223 * 18 17 16 20 20 C 1.38464 * 120.11034 * 0.51604 * 18 17 16 21 21 C 1.38254 * 120.15197 * 359.75725 * 20 18 17 22 22 C 1.38520 * 120.03930 * 359.97438 * 21 20 18 23 23 O 1.36025 * 120.05851 * 179.97438 * 22 21 20 24 24 C 1.42897 * 116.99966 * 0.02562 * 23 22 21 25 25 F 1.39898 * 109.47696 * 300.00399 * 24 23 22 26 26 F 1.39908 * 109.46703 * 60.00635 * 24 23 22 27 27 H 1.09000 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47311 * 299.99542 * 1 2 3 29 29 H 1.09004 * 109.47729 * 60.00056 * 1 2 3 30 30 H 0.97004 * 119.99381 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99946 * 94.99541 * 12 2 1 32 32 H 0.97006 * 120.00139 * 354.35794 * 15 13 12 33 33 H 1.08000 * 120.01997 * 359.97438 * 17 16 15 34 34 H 1.08006 * 119.92300 * 179.74722 * 20 18 17 35 35 H 1.08004 * 119.98229 * 179.97438 * 21 20 18 36 36 H 1.09001 * 109.47183 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.7039 -0.2360 -2.4827 7 7 0.9477 0.8333 -2.6033 8 14 2.3328 -1.1121 -4.0080 9 1 1.3568 -2.1531 -4.4187 10 1 2.5017 -0.1298 -5.1088 11 1 3.6402 -1.7498 -3.7088 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1617 2.4116 15 7 2.5968 -0.6533 3.4574 16 6 2.8432 0.0697 4.6326 17 6 3.1301 1.4252 4.5675 18 6 3.3676 2.1380 5.7297 19 9 3.6420 3.4593 5.6662 20 6 3.3299 1.4981 6.9570 21 6 3.0499 0.1460 7.0268 22 6 2.8057 -0.5724 5.8679 23 8 2.5308 -1.9028 5.9362 24 6 2.5095 -2.4950 7.2365 25 9 3.7614 -2.3384 7.8409 26 9 1.5326 -1.8687 8.0181 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 0.7169 1.1672 -3.4844 31 1 2.2490 -1.6317 1.1526 32 1 2.7501 -1.6110 3.4361 33 1 3.1644 1.9249 3.6106 34 1 3.5197 2.0565 7.8618 35 1 3.0216 -0.3505 7.9856 36 1 2.2783 -3.5565 7.1486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162803282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:12 Heat of formation + Delta-G solvation = -186.877850 kcal Electronic energy + Delta-G solvation = -26494.338425 eV Core-core repulsion = 21950.366233 eV Total energy + Delta-G solvation = -4543.972192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.67004 -48.79043 -47.65658 -40.70882 -39.24323 -37.32620 -35.21946 -34.29023 -32.50251 -30.37208 -29.77066 -28.31536 -26.30533 -25.29461 -23.66346 -22.52616 -21.36236 -19.97324 -19.34502 -18.82960 -18.32649 -18.22012 -17.70837 -16.49087 -16.14828 -15.84337 -15.68108 -15.49133 -14.96473 -14.86760 -14.63512 -14.24373 -14.08825 -14.03908 -13.94789 -13.75152 -13.44893 -13.30913 -12.63985 -12.47171 -12.32615 -12.03534 -11.73851 -11.43767 -11.13817 -11.02188 -10.81818 -10.43278 -10.29563 -10.27183 -9.50220 -9.09239 -8.68229 -8.60353 -8.16287 -7.78766 -6.16449 -4.26042 1.02607 1.10476 2.22393 2.93935 3.13224 3.22112 3.29508 3.31663 3.31928 3.81586 3.96285 4.23582 4.30445 4.31506 4.56666 4.65674 4.85146 5.08665 5.16344 5.28046 5.57559 5.79703 5.90238 6.12490 6.44754 6.48665 6.73553 6.92510 6.98913 7.04190 7.14502 7.37112 7.57371 7.75983 7.91769 8.10136 8.63978 8.76287 9.10413 9.41767 10.89620 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003180 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.955051 B = 8804.014059 C = 9787.125027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.279 3.721 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.714 5.714 13 C 0.692 3.308 14 O -0.578 6.578 15 N -0.684 5.684 16 C 0.210 3.790 17 C -0.142 4.142 18 C 0.104 3.896 19 F -0.135 7.135 20 C -0.151 4.151 21 C -0.139 4.139 22 C 0.048 3.952 23 O -0.319 6.319 24 C 0.413 3.587 25 F -0.200 7.200 26 F -0.198 7.198 27 H 0.026 0.974 28 H 0.016 0.984 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.410 0.590 33 H 0.174 0.826 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -7.436 20.234 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.364 5.364 13 C 0.393 3.607 14 O -0.456 6.456 15 N -0.331 5.331 16 C 0.111 3.889 17 C -0.164 4.164 18 C 0.084 3.916 19 F -0.114 7.114 20 C -0.171 4.171 21 C -0.158 4.158 22 C 0.002 3.998 23 O -0.237 6.237 24 C 0.323 3.677 25 F -0.181 7.181 26 F -0.180 7.180 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.245 0.755 33 H 0.192 0.808 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.827 -6.308 19.818 21.147 hybrid contribution 0.490 -1.108 -0.506 1.313 sum 4.317 -7.415 19.312 21.133 Atomic orbital electron populations 1.22112 0.98408 0.99176 1.01033 1.18743 0.90962 0.93821 0.78716 0.93090 1.21185 1.32733 1.13280 0.90172 0.92019 1.24878 0.94795 0.94928 0.99050 1.69909 1.35769 1.22264 1.23996 0.86419 0.79153 0.79229 0.82117 1.20538 1.21029 1.19855 1.45904 1.68131 1.13513 1.08891 1.16159 0.78624 0.85561 0.80378 1.90855 1.56535 1.14265 1.83919 1.42773 1.69150 1.11640 1.09503 1.16483 0.98667 0.90778 0.82946 1.21418 1.01674 0.92855 1.00430 1.17426 1.02064 0.78295 0.93826 1.91503 1.91219 1.31455 1.97215 1.20797 1.04847 0.94503 0.96929 1.21046 1.03155 0.94732 0.96870 1.18404 1.05840 0.82377 0.93185 1.86565 1.86286 1.21866 1.28981 1.23345 0.72907 0.96330 0.75109 1.93098 1.44086 1.96826 1.84132 1.93106 1.63372 1.85543 1.76007 0.95451 0.96523 0.89028 0.92487 0.77976 0.75481 0.80848 0.84330 0.84013 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.28 6.93 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.82 8.72 -34.44 -0.30 -14.12 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.31 -17.82 -0.09 1.67 16 7 N -0.88 -24.45 11.33 55.43 0.63 -23.82 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 N -0.71 -14.35 5.07 -59.81 -0.30 -14.65 16 13 C 0.69 13.65 8.33 -86.92 -0.72 12.92 16 14 O -0.58 -13.49 13.17 5.28 0.07 -13.42 16 15 N -0.68 -10.47 5.30 -14.11 -0.07 -10.54 16 16 C 0.21 3.19 6.45 -83.49 -0.54 2.65 16 17 C -0.14 -2.32 8.69 -39.35 -0.34 -2.67 16 18 C 0.10 1.51 7.29 -39.44 -0.29 1.22 16 19 F -0.14 -2.03 17.26 2.25 0.04 -1.99 16 20 C -0.15 -1.80 10.02 -39.49 -0.40 -2.20 16 21 C -0.14 -1.61 8.26 -39.47 -0.33 -1.94 16 22 C 0.05 0.61 6.50 -39.09 -0.25 0.36 16 23 O -0.32 -3.29 9.84 -19.82 -0.20 -3.48 16 24 C 0.41 2.90 5.98 101.05 0.60 3.50 16 25 F -0.20 -1.64 15.58 2.25 0.04 -1.60 16 26 F -0.20 -1.74 15.59 2.25 0.04 -1.71 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.59 8.56 -40.82 -0.35 6.24 16 32 H 0.41 4.97 8.35 -40.82 -0.34 4.63 16 33 H 0.17 3.28 5.79 -52.49 -0.30 2.98 16 34 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.14 1.41 5.09 -52.48 -0.27 1.14 16 36 H 0.18 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -31.16 321.36 -5.64 -36.80 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.20 Total: 9.48 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.49 Total: 4.87 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.25 Total: -49.01 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.13 Total: -16.91 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.16 -5.64 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162803282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.079 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds